Wall clock time and date at job start Tue Mar 31 2020 14:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00517 * 2 1 4 4 N 1.46499 * 109.47457 * 125.17041 * 3 2 1 5 5 C 1.36732 * 127.13668 * 268.19677 * 4 3 2 6 6 C 1.50703 * 126.34908 * 359.96223 * 5 4 3 7 7 C 1.53001 * 109.46917 * 270.28915 * 6 5 4 8 8 H 1.08999 * 109.47284 * 55.00105 * 7 6 5 9 9 O 1.42894 * 109.47099 * 294.99726 * 7 6 5 10 10 C 1.50704 * 109.47025 * 174.99954 * 7 6 5 11 11 H 1.08004 * 119.99561 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99801 * 180.02562 * 10 7 6 13 13 N 1.31508 * 120.00500 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 119.99632 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47142 * 59.99998 * 14 12 10 16 16 H 1.48505 * 109.47092 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47337 * 300.00260 * 14 12 10 18 18 N 1.30291 * 107.30293 * 180.22883 * 5 4 3 19 19 N 1.28530 * 110.05803 * 359.77070 * 18 5 4 20 20 C 1.31221 * 109.85455 * 359.97438 * 19 18 5 21 21 N 1.38578 * 126.47157 * 179.97438 * 20 19 18 22 22 C 1.47017 * 110.99863 * 36.09207 * 21 20 19 23 23 C 1.53098 * 109.26021 * 177.60782 * 22 21 20 24 24 O 1.43020 * 109.25910 * 56.84589 * 23 22 21 25 25 C 1.43012 * 113.73526 * 301.33223 * 24 23 22 26 26 H 1.09005 * 109.50972 * 298.69101 * 25 24 23 27 27 C 1.53003 * 109.50291 * 178.60313 * 25 24 23 28 28 C 1.47016 * 111.00455 * 272.45741 * 21 20 19 29 29 H 1.07995 * 120.00217 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99547 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.99761 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46837 * 5.16485 * 3 2 1 33 33 H 1.09002 * 109.46627 * 245.17219 * 3 2 1 34 34 H 1.09004 * 109.47084 * 30.28856 * 6 5 4 35 35 H 1.08997 * 109.47128 * 150.29091 * 6 5 4 36 36 H 0.96700 * 114.00630 * 300.00179 * 9 7 6 37 37 H 0.97002 * 120.00121 * 179.97438 * 13 12 10 38 38 H 1.09003 * 109.50654 * 57.66935 * 22 21 20 39 39 H 1.09008 * 109.54286 * 297.56219 * 22 21 20 40 40 H 1.09002 * 109.50218 * 296.90964 * 23 22 21 41 41 H 1.08997 * 109.54553 * 176.80552 * 23 22 21 42 42 H 1.09003 * 109.46893 * 60.00455 * 27 25 24 43 43 H 1.09002 * 109.47227 * 179.97438 * 27 25 24 44 44 H 1.08988 * 109.47562 * 300.00181 * 27 25 24 45 45 H 1.09000 * 109.50657 * 62.45696 * 28 21 20 46 46 H 1.09000 * 109.50558 * 302.32798 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9968 1.3301 1.1290 5 6 2.7619 1.8209 2.3834 6 6 1.4809 2.4462 2.8725 7 6 1.5174 3.9535 2.6126 8 1 1.7141 4.1354 1.5561 9 8 2.5522 4.5475 3.3990 10 6 0.1900 4.5603 2.9882 11 1 -0.6004 3.9335 3.3741 12 6 -0.0153 5.9155 2.8392 13 7 0.9473 6.6788 2.3698 14 14 -1.6608 6.6675 3.3041 15 1 -1.9292 6.4201 4.7435 16 1 -1.6254 8.1305 3.0520 17 1 -2.7360 6.0497 2.4869 18 7 3.8528 1.6531 3.0758 19 7 4.7525 1.0896 2.3512 20 6 4.2796 0.8654 1.1479 21 7 4.9573 0.2744 0.0935 22 6 5.8504 -0.7908 0.5721 23 6 6.5322 -1.4549 -0.6270 24 8 7.2308 -0.4614 -1.3823 25 6 6.3911 0.5910 -1.8646 26 1 5.6348 0.1767 -2.5314 27 6 7.2386 1.6127 -2.6254 28 6 5.7078 1.2759 -0.6780 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3590 2.1315 0.0925 33 1 2.6190 1.4038 -0.9327 34 1 0.6362 2.0063 2.3420 35 1 1.3729 2.2643 3.9418 36 1 2.4418 4.4248 4.3518 37 1 0.8027 7.6322 2.2646 38 1 5.2699 -1.5343 1.1185 39 1 6.6069 -0.3639 1.2306 40 1 5.7796 -1.9289 -1.2572 41 1 7.2379 -2.2072 -0.2747 42 1 7.7277 1.1237 -3.4678 43 1 6.5980 2.4144 -2.9931 44 1 7.9935 2.0277 -1.9578 45 1 6.4621 1.7364 -0.0400 46 1 5.0234 2.0411 -1.0442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355961278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:06 Heat of formation + Delta-G solvation = 13.941709 kcal Electronic energy + Delta-G solvation = -28366.795501 eV Core-core repulsion = 24486.891127 eV Total energy + Delta-G solvation = -3879.904374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.62718 -39.83136 -36.32646 -36.10664 -35.61847 -33.09812 -32.61341 -32.19653 -31.26019 -29.03688 -28.01206 -26.82038 -25.88951 -25.08090 -23.43294 -21.72190 -21.41593 -20.60970 -20.02547 -19.79882 -17.44335 -16.97407 -16.75659 -16.37003 -16.12869 -15.39336 -15.18906 -14.92850 -14.68781 -14.55890 -14.32495 -14.19446 -13.70987 -13.68793 -13.19713 -12.91510 -12.79133 -12.56820 -12.24684 -12.19730 -11.75238 -11.57262 -11.43001 -11.30859 -11.19198 -11.12843 -10.92759 -10.88592 -10.79025 -10.36032 -10.13918 -9.91144 -9.81935 -9.63925 -9.36333 -9.00996 -8.66725 -8.48366 -8.00934 -6.08914 -4.29323 1.88019 2.07591 2.64519 3.23556 3.26524 3.30028 3.32041 3.47143 3.69449 4.31330 4.48026 4.66664 4.67441 4.79419 4.80995 4.88129 4.96776 5.02237 5.11199 5.18223 5.18569 5.23844 5.31613 5.38697 5.45532 5.51940 5.58610 5.65552 5.71740 5.74972 5.84647 5.93640 6.09729 6.21665 6.27906 6.38773 6.42590 6.49561 6.55842 6.62488 6.88452 6.91687 7.41766 7.54851 7.73645 8.04075 8.73283 9.18254 9.35276 9.50943 10.94991 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.003356 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.038633 B = 8341.683786 C = 8661.192851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.174 4.174 3 C 0.140 3.860 4 N -0.464 5.464 5 C 0.225 3.775 6 C -0.066 4.066 7 C 0.242 3.758 8 H 0.050 0.950 9 O -0.558 6.558 10 C -0.577 4.577 11 H 0.059 0.941 12 C 0.082 3.918 13 N -0.857 5.857 14 Si 0.891 3.109 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.276 1.276 18 N -0.288 5.288 19 N -0.313 5.313 20 C 0.320 3.680 21 N -0.456 5.456 22 C 0.033 3.967 23 C 0.067 3.933 24 O -0.380 6.380 25 C 0.094 3.906 26 H 0.069 0.931 27 C -0.146 4.146 28 C 0.029 3.971 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.350 0.650 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.414 -15.288 -10.688 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.193 4.193 3 C 0.017 3.983 4 N -0.157 5.157 5 C -0.042 4.042 6 C -0.106 4.106 7 C 0.183 3.817 8 H 0.067 0.933 9 O -0.360 6.360 10 C -0.615 4.615 11 H 0.077 0.923 12 C -0.125 4.125 13 N -0.492 5.492 14 Si 0.718 3.282 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.201 1.201 18 N -0.127 5.127 19 N -0.157 5.157 20 C -0.036 4.036 21 N -0.181 5.181 22 C -0.094 4.094 23 C -0.010 4.010 24 O -0.299 6.299 25 C 0.036 3.964 26 H 0.087 0.913 27 C -0.203 4.203 28 C -0.099 4.099 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.194 0.806 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.539 -15.105 -10.546 19.548 hybrid contribution -1.901 0.557 0.172 1.989 sum 4.638 -14.547 -10.374 18.459 Atomic orbital electron populations 1.24022 0.95581 1.02742 0.97692 1.23024 0.96130 0.97896 1.02291 1.20916 0.91893 0.97578 0.87885 1.46236 1.10993 1.46261 1.12172 1.25324 0.99823 0.98350 0.80687 1.21260 0.87244 1.00304 1.01822 1.19260 0.87437 0.82456 0.92573 0.93255 1.86574 1.50057 1.79972 1.19415 1.21560 0.98978 0.93581 1.47370 0.92302 1.25025 0.96366 0.97249 0.93888 1.70068 1.31592 1.05331 1.42203 0.86706 0.84052 0.78176 0.79266 1.19985 1.21184 1.20127 1.74029 0.97560 1.15783 1.25298 1.74500 1.23729 1.16453 1.01023 1.22115 0.85016 1.03035 0.93409 1.58819 1.28930 1.11397 1.18997 1.22747 0.95517 0.93433 0.97724 1.22691 0.96371 0.90445 0.91502 1.88003 1.35310 1.35466 1.71146 1.22155 0.92504 0.88279 0.93500 0.91329 1.21758 1.00441 0.97789 1.00326 1.22979 0.97296 0.93957 0.95674 0.87879 0.87538 0.86931 0.87657 0.88332 0.90372 0.89124 0.80612 0.92792 0.89336 0.91527 0.92243 0.87804 0.91315 0.90687 0.91545 0.92204 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 14.32 29.01 0.42 -1.26 16 2 C -0.17 -2.01 9.85 -36.03 -0.35 -2.37 16 3 C 0.14 1.88 6.35 -5.19 -0.03 1.85 16 4 N -0.46 -7.89 2.79 -115.37 -0.32 -8.21 16 5 C 0.23 4.48 7.09 -154.02 -1.09 3.39 16 6 C -0.07 -1.31 5.02 -27.88 -0.14 -1.45 16 7 C 0.24 5.86 2.81 -27.88 -0.08 5.79 16 8 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 9 O -0.56 -14.58 12.48 -35.23 -0.44 -15.02 16 10 C -0.58 -14.92 8.76 -34.44 -0.30 -15.23 16 11 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 12 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 13 N -0.86 -24.66 12.84 55.43 0.71 -23.95 16 14 Si 0.89 20.34 29.54 -169.99 -5.02 15.31 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 N -0.29 -6.28 12.18 32.99 0.40 -5.88 16 19 N -0.31 -6.35 11.63 30.31 0.35 -6.00 16 20 C 0.32 5.49 6.75 -318.88 -2.15 3.34 16 21 N -0.46 -6.16 4.74 -174.20 -0.83 -6.98 16 22 C 0.03 0.40 5.33 -3.71 -0.02 0.38 16 23 C 0.07 0.63 7.01 37.21 0.26 0.89 16 24 O -0.38 -4.25 10.47 -35.23 -0.37 -4.62 16 25 C 0.09 0.95 3.43 -26.68 -0.09 0.86 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 C -0.15 -1.23 9.57 37.16 0.36 -0.88 16 28 C 0.03 0.36 4.87 -3.71 -0.02 0.34 16 29 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.11 1.11 7.84 -52.49 -0.41 0.70 16 31 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.11 1.48 7.44 -51.93 -0.39 1.09 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.39 7.88 -51.93 -0.41 0.98 16 35 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 36 H 0.35 8.27 9.04 45.56 0.41 8.68 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.91 7.96 -51.92 -0.41 0.49 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.60 8.14 -51.94 -0.42 0.18 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -32.90 384.56 -9.73 -42.63 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.67 Total: 9.16 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -3.35 Total: -2.26 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.32 Total: -51.02 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.81 Total: -19.63 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.90 -9.73 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355961278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.575 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds