Wall clock time and date at job start Tue Mar 31 2020 14:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00517 * 2 1 4 4 N 1.46499 * 109.47457 * 125.17041 * 3 2 1 5 5 C 1.36732 * 127.13668 * 268.19677 * 4 3 2 6 6 C 1.50703 * 126.34908 * 359.96223 * 5 4 3 7 7 C 1.53001 * 109.46917 * 270.28915 * 6 5 4 8 8 H 1.08999 * 109.47284 * 55.00105 * 7 6 5 9 9 O 1.42894 * 109.47099 * 294.99726 * 7 6 5 10 10 C 1.50704 * 109.47025 * 174.99954 * 7 6 5 11 11 H 1.08004 * 119.99561 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99801 * 180.02562 * 10 7 6 13 13 N 1.31508 * 120.00500 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 119.99632 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47142 * 59.99998 * 14 12 10 16 16 H 1.48505 * 109.47092 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47337 * 300.00260 * 14 12 10 18 18 N 1.30291 * 107.30293 * 180.22883 * 5 4 3 19 19 N 1.28530 * 110.05803 * 359.77070 * 18 5 4 20 20 C 1.31221 * 109.85455 * 359.97438 * 19 18 5 21 21 N 1.38578 * 126.47157 * 179.97438 * 20 19 18 22 22 C 1.47017 * 110.99863 * 36.09207 * 21 20 19 23 23 C 1.53098 * 109.26021 * 177.60782 * 22 21 20 24 24 O 1.43020 * 109.25910 * 56.84589 * 23 22 21 25 25 C 1.43012 * 113.73526 * 301.33223 * 24 23 22 26 26 H 1.09005 * 109.50972 * 298.69101 * 25 24 23 27 27 C 1.53003 * 109.50291 * 178.60313 * 25 24 23 28 28 C 1.47016 * 111.00455 * 272.45741 * 21 20 19 29 29 H 1.07995 * 120.00217 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99547 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.99761 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46837 * 5.16485 * 3 2 1 33 33 H 1.09002 * 109.46627 * 245.17219 * 3 2 1 34 34 H 1.09004 * 109.47084 * 30.28856 * 6 5 4 35 35 H 1.08997 * 109.47128 * 150.29091 * 6 5 4 36 36 H 0.96700 * 114.00630 * 300.00179 * 9 7 6 37 37 H 0.97002 * 120.00121 * 179.97438 * 13 12 10 38 38 H 1.09003 * 109.50654 * 57.66935 * 22 21 20 39 39 H 1.09008 * 109.54286 * 297.56219 * 22 21 20 40 40 H 1.09002 * 109.50218 * 296.90964 * 23 22 21 41 41 H 1.08997 * 109.54553 * 176.80552 * 23 22 21 42 42 H 1.09003 * 109.46893 * 60.00455 * 27 25 24 43 43 H 1.09002 * 109.47227 * 179.97438 * 27 25 24 44 44 H 1.08988 * 109.47562 * 300.00181 * 27 25 24 45 45 H 1.09000 * 109.50657 * 62.45696 * 28 21 20 46 46 H 1.09000 * 109.50558 * 302.32798 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9968 1.3301 1.1290 5 6 2.7619 1.8209 2.3834 6 6 1.4809 2.4462 2.8725 7 6 1.5174 3.9535 2.6126 8 1 1.7141 4.1354 1.5561 9 8 2.5522 4.5475 3.3990 10 6 0.1900 4.5603 2.9882 11 1 -0.6004 3.9335 3.3741 12 6 -0.0153 5.9155 2.8392 13 7 0.9473 6.6788 2.3698 14 14 -1.6608 6.6675 3.3041 15 1 -1.9292 6.4201 4.7435 16 1 -1.6254 8.1305 3.0520 17 1 -2.7360 6.0497 2.4869 18 7 3.8528 1.6531 3.0758 19 7 4.7525 1.0896 2.3512 20 6 4.2796 0.8654 1.1479 21 7 4.9573 0.2744 0.0935 22 6 5.8504 -0.7908 0.5721 23 6 6.5322 -1.4549 -0.6270 24 8 7.2308 -0.4614 -1.3823 25 6 6.3911 0.5910 -1.8646 26 1 5.6348 0.1767 -2.5314 27 6 7.2386 1.6127 -2.6254 28 6 5.7078 1.2759 -0.6780 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3590 2.1315 0.0925 33 1 2.6190 1.4038 -0.9327 34 1 0.6362 2.0063 2.3420 35 1 1.3729 2.2643 3.9418 36 1 2.4418 4.4248 4.3518 37 1 0.8027 7.6322 2.2646 38 1 5.2699 -1.5343 1.1185 39 1 6.6069 -0.3639 1.2306 40 1 5.7796 -1.9289 -1.2572 41 1 7.2379 -2.2072 -0.2747 42 1 7.7277 1.1237 -3.4678 43 1 6.5980 2.4144 -2.9931 44 1 7.9935 2.0277 -1.9578 45 1 6.4621 1.7364 -0.0400 46 1 5.0234 2.0411 -1.0442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355961278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:05 Heat of formation + Delta-G solvation = -7.772284 kcal Electronic energy + Delta-G solvation = -28367.737090 eV Core-core repulsion = 24486.891127 eV Total energy + Delta-G solvation = -3880.845963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.06093 -40.77862 -38.07601 -37.25010 -36.87546 -34.26196 -33.94009 -33.75614 -32.85689 -30.30413 -29.28448 -28.02973 -27.26973 -26.54315 -24.36926 -23.48525 -22.51828 -21.88322 -21.26270 -20.86147 -19.14112 -18.41902 -17.75661 -17.58498 -17.22771 -16.65824 -16.51024 -16.31196 -16.13229 -15.76533 -15.69422 -15.42827 -15.28761 -14.92970 -14.54060 -14.45621 -13.74808 -13.45076 -13.25502 -13.21522 -13.02261 -12.95272 -12.79382 -12.68942 -12.66252 -12.60301 -12.46765 -12.20491 -12.05858 -11.80523 -11.58642 -11.28958 -11.08900 -10.84629 -10.70801 -10.55181 -10.50826 -10.14565 -9.61357 -8.13264 -6.40228 0.66021 0.87589 1.44229 1.46119 1.52789 1.53683 1.75572 2.40548 2.51709 2.72880 3.13990 3.39978 3.59239 3.65481 3.73910 3.80126 3.91196 3.94984 4.03234 4.11784 4.16434 4.19789 4.28597 4.39356 4.42156 4.51435 4.53635 4.57245 4.68943 4.75346 4.83365 4.86696 4.89456 4.97463 4.99503 5.02757 5.24127 5.40318 5.48013 5.56402 5.57578 5.66090 5.69713 6.01937 6.12113 6.12698 6.70976 7.33448 7.52668 7.69041 8.91152 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.003356 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.038633 B = 8341.683786 C = 8661.192851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.186 4.186 3 C 0.135 3.865 4 N -0.460 5.460 5 C 0.211 3.789 6 C -0.047 4.047 7 C 0.244 3.756 8 H 0.018 0.982 9 O -0.580 6.580 10 C -0.582 4.582 11 H 0.072 0.928 12 C 0.028 3.972 13 N -0.902 5.902 14 Si 0.960 3.040 15 H -0.268 1.268 16 H -0.290 1.290 17 H -0.262 1.262 18 N -0.321 5.321 19 N -0.349 5.349 20 C 0.336 3.664 21 N -0.445 5.445 22 C 0.032 3.968 23 C 0.073 3.927 24 O -0.393 6.393 25 C 0.100 3.900 26 H 0.086 0.914 27 C -0.144 4.144 28 C 0.029 3.971 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.357 0.643 37 H 0.260 0.740 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.034 0.966 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 -17.066 -12.089 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.205 4.205 3 C 0.014 3.986 4 N -0.152 5.152 5 C -0.057 4.057 6 C -0.087 4.087 7 C 0.186 3.814 8 H 0.036 0.964 9 O -0.384 6.384 10 C -0.620 4.620 11 H 0.090 0.910 12 C -0.175 4.175 13 N -0.538 5.538 14 Si 0.785 3.215 15 H -0.193 1.193 16 H -0.216 1.216 17 H -0.186 1.186 18 N -0.160 5.160 19 N -0.193 5.193 20 C -0.021 4.021 21 N -0.171 5.171 22 C -0.095 4.095 23 C -0.004 4.004 24 O -0.312 6.312 25 C 0.042 3.958 26 H 0.104 0.896 27 C -0.201 4.201 28 C -0.098 4.098 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.115 0.885 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.146 0.854 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.088 -16.911 -11.956 21.327 hybrid contribution -1.417 1.067 0.557 1.860 sum 3.671 -15.844 -11.399 19.861 Atomic orbital electron populations 1.24225 0.95128 1.03767 0.95291 1.22881 0.96439 0.96774 1.04391 1.21177 0.91605 0.98669 0.87182 1.46419 1.11381 1.45292 1.12095 1.25198 0.99443 0.99219 0.81888 1.20936 0.88191 0.97174 1.02422 1.19114 0.86476 0.85185 0.90673 0.96369 1.86527 1.50899 1.80782 1.20198 1.21958 0.99740 0.93931 1.46381 0.90992 1.25894 0.99868 0.97923 0.93778 1.70227 1.34033 1.05459 1.44124 0.85602 0.79797 0.76890 0.79234 1.19317 1.21629 1.18644 1.73917 0.98445 1.16816 1.26864 1.74417 1.24190 1.18147 1.02574 1.22526 0.85102 1.01123 0.93375 1.59096 1.29219 1.11432 1.17374 1.22868 0.94810 0.92888 0.98967 1.22829 0.97137 0.90089 0.90343 1.88002 1.36131 1.35879 1.71232 1.22227 0.92895 0.88350 0.92354 0.89572 1.21782 1.00231 0.97803 1.00304 1.23056 0.96593 0.94108 0.96083 0.85611 0.87701 0.86485 0.88538 0.86818 0.88250 0.88718 0.79741 0.93067 0.88944 0.93783 0.90432 0.85444 0.89895 0.89568 0.92660 0.94733 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 14.32 67.78 0.97 -1.66 16 2 C -0.19 -3.93 9.85 25.64 0.25 -3.67 16 3 C 0.13 3.51 6.35 85.63 0.54 4.05 16 4 N -0.46 -15.64 2.79 -518.91 -1.45 -17.09 16 5 C 0.21 8.51 7.09 137.64 0.98 9.49 16 6 C -0.05 -1.86 5.02 29.85 0.15 -1.71 16 7 C 0.24 12.05 2.81 29.85 0.08 12.14 16 8 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 9 O -0.58 -31.25 12.48 -148.98 -1.86 -33.11 16 10 C -0.58 -29.96 8.76 25.60 0.22 -29.73 16 11 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 12 C 0.03 1.50 5.40 84.66 0.46 1.96 16 13 N -0.90 -52.86 12.84 21.45 0.28 -52.59 16 14 Si 0.96 41.40 29.54 68.60 2.03 43.43 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 16 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 18 N -0.32 -14.43 12.18 -49.54 -0.60 -15.04 16 19 N -0.35 -14.61 11.63 -58.01 -0.67 -15.29 16 20 C 0.34 11.61 6.75 260.11 1.76 13.36 16 21 N -0.45 -11.76 4.74 -705.05 -3.34 -15.11 16 22 C 0.03 0.74 5.33 86.31 0.46 1.20 16 23 C 0.07 1.19 7.01 72.01 0.50 1.70 16 24 O -0.39 -8.03 10.47 -148.98 -1.56 -9.59 16 25 C 0.10 1.85 3.43 30.63 0.10 1.96 16 26 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 27 C -0.14 -2.22 9.57 71.98 0.69 -1.53 16 28 C 0.03 0.72 4.87 86.31 0.42 1.14 16 29 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 30 H 0.10 1.94 7.84 -2.91 -0.02 1.92 16 31 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.10 2.69 7.44 -2.39 -0.02 2.67 16 33 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.10 3.43 7.88 -2.39 -0.02 3.41 16 35 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.36 17.42 9.04 -74.06 -0.67 16.75 16 37 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 1.22 7.96 -2.38 -0.02 1.20 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -72.25 384.56 0.70 -71.55 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.30 Total: 34.14 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 7.59 Total: 8.69 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -5.80 Total: -115.11 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -3.42 Total: -42.70 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -72.25 0.70 -71.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355961278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.775 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds