Wall clock time and date at job start Tue Mar 31 2020 14:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.52443 * 2 1 4 4 C 1.53039 * 109.49732 * 239.92071 * 2 1 3 5 5 C 1.53039 * 109.53895 * 178.68305 * 4 2 1 6 6 H 1.09000 * 109.49742 * 301.38186 * 5 4 2 7 7 C 1.52998 * 109.49852 * 181.31684 * 5 4 2 8 8 O 1.42903 * 109.47263 * 174.99815 * 7 5 4 9 9 C 1.52764 * 109.38350 * 61.23987 * 5 4 2 10 10 N 1.46919 * 109.00859 * 305.58978 * 9 5 4 11 11 C 1.34776 * 120.63427 * 233.58283 * 10 9 5 12 12 O 1.21597 * 119.99464 * 4.94303 * 11 10 9 13 13 N 1.34771 * 120.00631 * 184.94742 * 11 10 9 14 14 C 1.40193 * 120.00266 * 174.86994 * 13 11 10 15 15 C 1.40397 * 125.97225 * 359.97438 * 14 13 11 16 16 C 1.35242 * 107.86833 * 180.02562 * 15 14 13 17 17 N 1.34966 * 107.85930 * 359.97438 * 16 15 14 18 18 C 1.46499 * 125.97798 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47109 * 125.00104 * 18 17 16 20 20 H 1.08001 * 120.00144 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00273 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99450 * 0.27102 * 21 19 18 23 23 Si 1.86792 * 120.00212 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47371 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.47291 * 119.99899 * 23 21 19 26 26 H 1.48503 * 109.47369 * 239.99865 * 23 21 19 27 27 N 1.31211 * 125.97018 * 180.30409 * 14 13 11 28 28 C 1.46933 * 118.73829 * 53.30997 * 10 9 5 29 29 H 1.08996 * 109.47225 * 299.91644 * 1 2 3 30 30 H 1.09004 * 109.47122 * 59.91930 * 1 2 3 31 31 H 1.09003 * 109.47581 * 179.91897 * 1 2 3 32 32 H 1.09003 * 109.46014 * 298.70592 * 4 2 1 33 33 H 1.09007 * 109.46007 * 58.67957 * 4 2 1 34 34 H 1.08993 * 109.47440 * 295.00083 * 7 5 4 35 35 H 1.08997 * 109.47154 * 55.00023 * 7 5 4 36 36 H 0.96692 * 114.00179 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.51016 * 185.70612 * 9 5 4 38 38 H 1.09003 * 109.42737 * 65.42407 * 9 5 4 39 39 H 0.97002 * 119.99724 * 354.86886 * 13 11 10 40 40 H 1.07996 * 126.06937 * 0.02562 * 15 14 13 41 41 H 1.07999 * 126.07542 * 180.02562 * 16 15 14 42 42 H 1.08996 * 109.47317 * 5.00230 * 18 17 16 43 43 H 1.09001 * 109.47284 * 245.00298 * 18 17 16 44 44 H 0.96996 * 120.00649 * 359.73566 * 22 21 19 45 45 H 1.08995 * 109.59057 * 66.42755 * 28 10 9 46 46 H 1.09008 * 109.58596 * 186.71512 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2484 5 6 3.5708 -0.6950 -1.2660 6 1 3.9158 0.3389 -1.2547 7 6 4.0797 -1.3893 -2.5309 8 8 5.5010 -1.2612 -2.6056 9 6 4.1055 -1.4216 -0.0332 10 7 3.5046 -0.8292 1.1695 11 6 4.2811 -0.3857 2.1779 12 8 5.4914 -0.3908 2.0606 13 7 3.7162 0.0634 3.3161 14 6 4.5232 0.4235 4.4045 15 6 5.9254 0.3662 4.4462 16 6 6.3222 0.7954 5.6657 17 7 5.2172 1.1138 6.3722 18 6 5.1907 1.6215 7.7461 19 6 4.4251 2.9189 7.7876 20 1 4.0003 3.3245 6.8812 21 6 4.2669 3.5882 8.9826 22 7 4.7887 3.0971 10.0854 23 14 3.3173 5.1960 9.0341 24 1 2.8397 5.5328 7.6689 25 1 2.1526 5.0541 9.9444 26 1 4.2041 6.2790 9.5300 27 7 4.0996 0.8673 5.5644 28 6 2.0412 -0.7239 1.2495 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0277 -0.0015 32 1 1.6966 -1.7572 -1.2353 33 1 1.6583 -0.2242 -2.1390 34 1 3.8113 -2.4452 -2.4988 35 1 3.6266 -0.9257 -3.4071 36 1 5.8933 -1.6794 -3.3841 37 1 5.1895 -1.3160 0.0099 38 1 3.8411 -2.4775 -0.0917 39 1 2.7513 0.1375 3.3823 40 1 6.5723 0.0377 3.6463 41 1 7.3422 0.8708 6.0125 42 1 6.2108 1.7905 8.0908 43 1 4.7046 0.8919 8.3938 44 1 5.2816 2.2621 10.0587 45 1 1.6052 -1.7217 1.2979 46 1 1.7636 -0.1602 2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364259407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:37 Heat of formation + Delta-G solvation = -0.157049 kcal Electronic energy + Delta-G solvation = -27245.909986 eV Core-core repulsion = 23365.394245 eV Total energy + Delta-G solvation = -3880.515742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98054 -40.11512 -38.43918 -36.88189 -34.89324 -33.91902 -33.59272 -32.81967 -30.69303 -29.30759 -27.15115 -26.54887 -26.14750 -25.46404 -23.05191 -21.59626 -21.20982 -20.67467 -20.16689 -19.20489 -18.00169 -17.68065 -17.14728 -16.72527 -15.95679 -15.83465 -15.40027 -15.00290 -14.62585 -14.56504 -14.29235 -13.97348 -13.84455 -13.75256 -13.27379 -13.12348 -13.00694 -12.71595 -12.53396 -12.30644 -12.12585 -11.85245 -11.78132 -11.40476 -11.25009 -11.11582 -10.88622 -10.87117 -10.78280 -10.41241 -10.35861 -10.17784 -10.04985 -9.64264 -8.99281 -8.79929 -8.55111 -8.12665 -7.41822 -6.55599 -4.29269 2.32380 2.63075 3.08452 3.35999 3.39080 3.41825 3.58171 3.73827 3.81164 4.05103 4.31539 4.36783 4.42541 4.49217 4.56520 4.80456 4.94985 5.05477 5.07207 5.13491 5.15039 5.18247 5.24872 5.35284 5.37456 5.44931 5.50652 5.64262 5.74308 5.77494 5.80084 5.85759 6.02722 6.16558 6.33122 6.50835 6.53478 6.71723 6.80405 6.94568 7.27598 7.47222 7.65571 7.88788 7.90212 8.39026 8.58925 8.60330 8.67533 9.38950 10.81998 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018388 B = 0.002603 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.346123 B =10752.947123 C =11734.363329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.078 0.922 4 C -0.106 4.106 5 C -0.105 4.105 6 H 0.084 0.916 7 C 0.084 3.916 8 O -0.569 6.569 9 C 0.140 3.860 10 N -0.628 5.628 11 C 0.717 3.283 12 O -0.563 6.563 13 N -0.644 5.644 14 C 0.278 3.722 15 C -0.283 4.283 16 C 0.050 3.950 17 N -0.320 5.320 18 C 0.250 3.750 19 C -0.606 4.606 20 H 0.064 0.936 21 C 0.022 3.978 22 N -0.907 5.907 23 Si 1.082 2.918 24 H -0.288 1.288 25 H -0.284 1.284 26 H -0.285 1.285 27 N -0.306 5.306 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.379 0.621 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.405 0.595 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.046 0.954 43 H 0.034 0.966 44 H 0.268 0.732 45 H 0.073 0.927 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 -11.088 -25.885 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.144 4.144 5 C -0.125 4.125 6 H 0.102 0.898 7 C 0.006 3.994 8 O -0.375 6.375 9 C 0.017 3.983 10 N -0.365 5.365 11 C 0.418 3.582 12 O -0.438 6.438 13 N -0.297 5.297 14 C 0.024 3.976 15 C -0.314 4.314 16 C -0.099 4.099 17 N -0.101 5.101 18 C 0.131 3.869 19 C -0.644 4.644 20 H 0.082 0.918 21 C -0.183 4.183 22 N -0.543 5.543 23 Si 0.910 3.090 24 H -0.214 1.214 25 H -0.211 1.211 26 H -0.211 1.211 27 N -0.137 5.137 28 C -0.012 4.012 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.226 0.774 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.242 0.758 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.050 -9.239 -23.546 26.258 hybrid contribution 0.663 -1.662 -1.963 2.656 sum -6.387 -10.901 -25.509 28.466 Atomic orbital electron populations 1.21778 0.93948 1.02224 1.02453 1.21492 0.96140 1.00390 0.94557 0.90325 1.21563 0.93794 1.01118 0.97937 1.21484 0.95400 1.01613 0.93997 0.89778 1.22127 0.81480 0.98896 0.96899 1.86553 1.20318 1.80988 1.49590 1.21358 1.00465 0.95191 0.81238 1.47205 1.05785 1.65239 1.18285 1.15515 0.85089 0.78091 0.79520 1.90866 1.11765 1.60655 1.80518 1.41602 1.09393 1.67687 1.10975 1.18807 0.90190 1.00781 0.87870 1.21518 0.93247 1.17193 0.99492 1.22544 0.93687 1.00838 0.92867 1.48744 1.01575 1.46741 1.13089 1.19742 0.98717 0.95678 0.72725 1.22169 1.37962 1.06367 0.97915 0.91775 1.25922 0.97019 1.03863 0.91465 1.70785 1.33191 1.21304 1.28996 0.83346 0.76042 0.74251 0.75399 1.21368 1.21058 1.21095 1.77329 1.10242 1.25040 1.01107 1.21774 0.80067 1.00971 0.98359 0.92038 0.92158 0.92319 0.91385 0.91319 0.93455 0.93381 0.77402 0.87828 0.91914 0.75759 0.82078 0.81549 0.93641 0.94862 0.92210 0.90915 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.20 37.16 0.34 -0.46 16 2 C -0.11 -0.75 2.87 -90.50 -0.26 -1.01 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -0.65 4.45 -26.69 -0.12 -0.77 16 5 C -0.11 -0.86 2.56 -90.72 -0.23 -1.10 16 6 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 7 C 0.08 0.54 6.43 37.16 0.24 0.78 16 8 O -0.57 -4.65 13.30 -35.23 -0.47 -5.12 16 9 C 0.14 1.47 5.53 -3.93 -0.02 1.45 16 10 N -0.63 -7.42 2.98 -178.76 -0.53 -7.95 16 11 C 0.72 11.66 8.26 -86.92 -0.72 10.94 16 12 O -0.56 -10.99 12.91 5.28 0.07 -10.92 16 13 N -0.64 -10.89 5.36 -15.51 -0.08 -10.97 16 14 C 0.28 5.89 8.11 -154.36 -1.25 4.64 16 15 C -0.28 -5.94 9.61 -39.84 -0.38 -6.32 16 16 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 17 N -0.32 -7.71 3.66 -62.56 -0.23 -7.94 16 18 C 0.25 6.45 5.57 -5.19 -0.03 6.42 16 19 C -0.61 -17.32 9.24 -34.44 -0.32 -17.64 16 20 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 21 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 22 N -0.91 -26.69 13.65 55.43 0.76 -25.93 16 23 Si 1.08 25.34 29.90 -169.99 -5.08 20.26 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 N -0.31 -7.33 12.43 31.44 0.39 -6.94 16 28 C 0.11 0.95 5.68 -3.71 -0.02 0.93 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.38 1.31 9.12 45.56 0.42 1.73 16 37 H 0.10 1.39 6.83 -51.93 -0.35 1.04 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.40 5.71 6.31 -40.82 -0.26 5.45 16 40 H 0.16 3.33 5.93 -52.49 -0.31 3.02 16 41 H 0.17 2.84 8.06 -52.49 -0.42 2.42 16 42 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 43 H 0.03 0.89 8.01 -51.93 -0.42 0.48 16 44 H 0.27 7.71 7.22 -40.82 -0.29 7.41 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.67 5.64 -51.92 -0.29 0.38 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -35.88 372.36 -8.84 -44.72 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.20 Total: 5.94 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.07 Total: -0.75 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.30 Total: -59.74 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.40 Total: -16.04 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.88 -8.84 -44.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364259407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.565 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds