Wall clock time and date at job start Tue Mar 31 2020 14:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.49867 * 2 1 4 4 C 1.53042 * 109.49511 * 120.09446 * 2 1 3 5 5 C 1.53040 * 109.53685 * 181.31856 * 4 2 1 6 6 H 1.08997 * 109.50172 * 58.58777 * 5 4 2 7 7 C 1.53005 * 109.49697 * 178.64956 * 5 4 2 8 8 O 1.42898 * 109.47185 * 184.99379 * 7 5 4 9 9 C 1.53622 * 109.24276 * 298.50745 * 5 4 2 10 10 N 1.46928 * 108.54035 * 54.85906 * 9 5 4 11 11 C 1.34773 * 120.63068 * 126.37562 * 10 9 5 12 12 O 1.21592 * 120.00022 * 4.74177 * 11 10 9 13 13 N 1.34778 * 119.99979 * 184.75092 * 11 10 9 14 14 C 1.40195 * 119.99874 * 174.78065 * 13 11 10 15 15 C 1.40406 * 125.97284 * 0.02562 * 14 13 11 16 16 C 1.35248 * 107.86567 * 179.97438 * 15 14 13 17 17 N 1.34970 * 107.85811 * 359.97438 * 16 15 14 18 18 C 1.46495 * 125.97475 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47210 * 125.00027 * 18 17 16 20 20 H 1.08002 * 119.99789 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00138 * 179.97438 * 19 18 17 22 22 N 1.31508 * 119.99963 * 0.28142 * 21 19 18 23 23 Si 1.86799 * 119.99945 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47333 * 90.00060 * 23 21 19 25 25 H 1.48500 * 109.47073 * 210.00382 * 23 21 19 26 26 H 1.48496 * 109.47230 * 330.00189 * 23 21 19 27 27 N 1.31211 * 125.97035 * 180.32500 * 14 13 11 28 28 C 1.46927 * 118.73935 * 306.09088 * 10 9 5 29 29 H 1.08997 * 109.47194 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47264 * 300.07306 * 1 2 3 31 31 H 1.09006 * 109.46608 * 60.06893 * 1 2 3 32 32 H 1.09001 * 109.46006 * 301.33416 * 4 2 1 33 33 H 1.09002 * 109.46275 * 61.30918 * 4 2 1 34 34 H 1.08995 * 109.47311 * 305.00000 * 7 5 4 35 35 H 1.09003 * 109.47144 * 65.00070 * 7 5 4 36 36 H 0.96701 * 113.99999 * 179.97438 * 8 7 5 37 37 H 1.09006 * 109.74264 * 295.12254 * 9 5 4 38 38 H 1.08994 * 109.66974 * 174.55244 * 9 5 4 39 39 H 0.96993 * 119.99979 * 354.78471 * 13 11 10 40 40 H 1.07995 * 126.06554 * 359.95827 * 15 14 13 41 41 H 1.07997 * 126.06833 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.47148 * 5.00362 * 18 17 16 43 43 H 1.08996 * 109.47357 * 245.00220 * 18 17 16 44 44 H 0.97000 * 120.00129 * 359.72026 * 22 21 19 45 45 H 1.09001 * 109.58780 * 173.64736 * 28 10 9 46 46 H 1.09002 * 109.59007 * 293.93735 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7234 1.2482 5 6 3.5707 -0.6953 1.2659 6 1 3.9159 0.3385 1.2543 7 6 4.0796 -1.3893 2.5310 8 8 5.5009 -1.2613 2.6056 9 6 4.1050 -1.4318 0.0282 10 7 3.5046 -0.8289 -1.1696 11 6 4.2812 -0.3861 -2.1783 12 8 5.4838 -0.5611 -2.1415 13 7 3.7246 0.2510 -3.2275 14 6 4.5403 0.8077 -4.2226 15 6 5.9437 0.7750 -4.2524 16 6 6.3500 1.4182 -5.3706 17 7 5.2497 1.8428 -6.0269 18 6 5.2338 2.5861 -7.2891 19 6 4.3788 1.8550 -8.2918 20 1 3.8952 0.9295 -8.0162 21 6 4.2129 2.3683 -9.5607 22 7 4.8054 3.4930 -9.8977 23 14 3.1525 1.4624 -10.8034 24 1 1.7496 1.9376 -10.6969 25 1 3.6615 1.7253 -12.1735 26 1 3.2034 0.0041 -10.5279 27 7 4.1259 1.4550 -5.2860 28 6 2.0413 -0.7235 -1.2497 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5149 0.8893 31 1 -0.3633 0.5128 -0.8907 32 1 1.6581 -0.2250 2.1389 33 1 1.6968 -1.7577 1.2348 34 1 3.6265 -0.9254 3.4072 35 1 3.8112 -2.4452 2.4992 36 1 5.8930 -1.6787 3.3848 37 1 3.8338 -2.4863 0.0815 38 1 5.1895 -1.3333 -0.0177 39 1 2.7598 0.3243 -3.2942 40 1 6.5849 0.3178 -3.5134 41 1 7.3733 1.5651 -5.6833 42 1 6.2504 2.6724 -7.6729 43 1 4.8238 3.5817 -7.1194 44 1 5.3557 3.9636 -9.2523 45 1 1.7638 -0.1574 -2.1389 46 1 1.6054 -1.7213 -1.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364259411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:39 Heat of formation + Delta-G solvation = -25.139366 kcal Electronic energy + Delta-G solvation = -27253.523108 eV Core-core repulsion = 23371.924052 eV Total energy + Delta-G solvation = -3881.599056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.41532 -41.42773 -39.37569 -37.51428 -36.49698 -35.62319 -34.65697 -33.61475 -32.46233 -31.03056 -28.33857 -27.73360 -26.72328 -26.62871 -25.00416 -22.93395 -22.22778 -21.77311 -21.24493 -20.46456 -19.29452 -19.14725 -18.22542 -18.18978 -17.25021 -16.91231 -16.34045 -16.27822 -15.87684 -15.76942 -15.58870 -15.20883 -15.06712 -14.78418 -14.55226 -14.28732 -14.02837 -13.91920 -13.75645 -13.53985 -13.25564 -13.21966 -12.99583 -12.61708 -12.38225 -12.09100 -11.98774 -11.97113 -11.82343 -11.71299 -11.57187 -11.47741 -11.08858 -11.01474 -10.86563 -10.69448 -9.92934 -9.73695 -9.14740 -8.77557 -6.56121 0.93519 1.03607 1.50325 1.57936 1.58693 1.77817 1.91974 2.29235 2.47950 2.72352 3.00820 3.27196 3.70611 3.74318 3.82906 3.86369 3.97130 4.11070 4.20145 4.31554 4.49379 4.51129 4.55281 4.56850 4.62280 4.64820 4.71790 4.76402 4.81783 4.83457 4.84540 4.95084 5.01729 5.05437 5.17818 5.24936 5.34032 5.46028 5.50552 5.53486 5.70459 5.82221 5.92850 6.26405 6.41155 6.52428 6.96721 6.99152 7.19588 7.30241 8.57960 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.002559 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.283464 B =10940.826570 C =11881.231578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.060 0.940 4 C -0.100 4.100 5 C -0.100 4.100 6 H 0.055 0.945 7 C 0.084 3.916 8 O -0.600 6.600 9 C 0.138 3.862 10 N -0.617 5.617 11 C 0.711 3.289 12 O -0.601 6.601 13 N -0.638 5.638 14 C 0.286 3.714 15 C -0.291 4.291 16 C 0.058 3.942 17 N -0.344 5.344 18 C 0.260 3.740 19 C -0.621 4.621 20 H 0.044 0.956 21 C -0.019 4.019 22 N -0.923 5.923 23 Si 1.123 2.877 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.278 1.278 27 N -0.345 5.345 28 C 0.104 3.896 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.397 0.603 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.417 0.583 40 H 0.165 0.835 41 H 0.203 0.797 42 H 0.054 0.946 43 H 0.017 0.983 44 H 0.261 0.739 45 H 0.076 0.924 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 -11.699 27.848 31.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.078 0.922 4 C -0.137 4.137 5 C -0.120 4.120 6 H 0.074 0.926 7 C 0.006 3.994 8 O -0.409 6.409 9 C 0.016 3.984 10 N -0.353 5.353 11 C 0.412 3.588 12 O -0.479 6.479 13 N -0.292 5.292 14 C 0.030 3.970 15 C -0.323 4.323 16 C -0.091 4.091 17 N -0.126 5.126 18 C 0.140 3.860 19 C -0.659 4.659 20 H 0.063 0.937 21 C -0.219 4.219 22 N -0.559 5.559 23 Si 0.944 3.056 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.204 1.204 27 N -0.176 5.176 28 C -0.018 4.018 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.247 0.753 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.257 0.743 40 H 0.183 0.817 41 H 0.220 0.780 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.730 -10.961 25.065 28.716 hybrid contribution 1.235 -0.082 2.226 2.547 sum -7.495 -11.043 27.290 30.379 Atomic orbital electron populations 1.21745 0.92325 1.03195 1.02661 1.21454 0.97316 0.99194 0.94194 0.92190 1.21553 0.91798 1.02393 0.97969 1.21610 0.97049 0.99652 0.93679 0.92602 1.22214 0.80768 1.00029 0.96380 1.86507 1.21556 1.81710 1.51079 1.21678 0.98574 0.96639 0.81513 1.47327 1.07080 1.63490 1.17394 1.15753 0.84946 0.78286 0.79856 1.90825 1.14232 1.63043 1.79768 1.41616 1.09624 1.57240 1.20691 1.19110 0.90868 0.97134 0.89885 1.21678 0.93265 1.14166 1.03151 1.23151 0.94627 0.98052 0.93220 1.48564 1.02471 1.42816 1.18710 1.19430 0.98608 0.90614 0.77302 1.22300 1.33794 1.10660 0.99124 0.93745 1.27295 0.98353 0.96372 0.99862 1.70912 1.30521 1.16170 1.38331 0.82835 0.74825 0.74362 0.73581 1.19693 1.19817 1.20385 1.77247 1.10709 1.23396 1.06293 1.22107 0.77753 1.02653 0.99316 0.90942 0.91324 0.92540 0.89657 0.89370 0.91497 0.91448 0.75284 0.89639 0.91306 0.74294 0.81732 0.78046 0.92785 0.96524 0.92943 0.90567 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.20 71.98 0.66 -0.47 16 2 C -0.10 -1.20 2.87 -10.72 -0.03 -1.23 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.10 -0.90 4.45 30.62 0.14 -0.76 16 5 C -0.10 -1.48 2.59 -10.57 -0.03 -1.50 16 6 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 7 C 0.08 0.88 6.43 71.98 0.46 1.34 16 8 O -0.60 -9.15 13.32 -148.98 -1.98 -11.13 16 9 C 0.14 2.78 5.57 86.51 0.48 3.26 16 10 N -0.62 -14.17 2.97 -836.05 -2.48 -16.65 16 11 C 0.71 23.32 8.26 179.05 1.48 24.80 16 12 O -0.60 -24.00 12.93 -4.01 -0.05 -24.05 16 13 N -0.64 -21.72 5.36 -321.23 -1.72 -23.44 16 14 C 0.29 12.30 8.11 133.31 1.08 13.38 16 15 C -0.29 -12.35 9.61 22.11 0.21 -12.13 16 16 C 0.06 2.41 11.44 83.52 0.96 3.36 16 17 N -0.34 -16.84 3.66 -351.85 -1.29 -18.13 16 18 C 0.26 13.71 5.57 85.63 0.48 14.19 16 19 C -0.62 -36.01 9.24 25.60 0.24 -35.78 16 20 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 21 C -0.02 -1.09 5.46 84.66 0.46 -0.63 16 22 N -0.92 -54.56 13.65 21.45 0.29 -54.27 16 23 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 27 N -0.35 -16.87 12.43 -54.43 -0.68 -17.55 16 28 C 0.10 1.58 5.71 86.36 0.49 2.07 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.40 2.22 9.12 -74.06 -0.68 1.55 16 37 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.07 1.90 6.89 -2.39 -0.02 1.88 16 39 H 0.42 11.76 6.28 -92.71 -0.58 11.18 16 40 H 0.17 6.91 5.93 -2.91 -0.02 6.89 16 41 H 0.20 6.65 8.06 -2.91 -0.02 6.63 16 42 H 0.05 2.73 7.93 -2.38 -0.02 2.71 16 43 H 0.02 0.93 8.01 -2.39 -0.02 0.91 16 44 H 0.26 15.27 7.22 -92.71 -0.67 14.60 16 45 H 0.08 1.20 5.57 -2.39 -0.01 1.19 16 46 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -79.25 372.42 1.07 -78.18 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.15 Total: 24.70 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 7.08 Total: 9.90 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -5.88 Total: -130.04 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -2.04 Total: -35.19 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -79.25 1.07 -78.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364259411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.042 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds