Wall clock time and date at job start Tue Mar 31 2020 14:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49875 * 2 1 4 4 C 1.53036 * 109.49787 * 120.09794 * 2 1 3 5 5 C 1.53040 * 109.53783 * 58.58760 * 4 2 1 6 6 H 1.08994 * 109.49680 * 301.41386 * 5 4 2 7 7 C 1.53005 * 109.49968 * 181.35125 * 5 4 2 8 8 O 1.42899 * 109.47311 * 175.00067 * 7 5 4 9 9 C 1.52759 * 109.38167 * 61.23870 * 5 4 2 10 10 N 1.46922 * 109.01045 * 305.58965 * 9 5 4 11 11 C 1.34777 * 120.62894 * 233.58116 * 10 9 5 12 12 O 1.21596 * 119.99631 * 184.73561 * 11 10 9 13 13 N 1.34774 * 120.00338 * 4.74207 * 11 10 9 14 14 C 1.40192 * 120.00163 * 174.60018 * 13 11 10 15 15 C 1.40396 * 125.97061 * 359.97438 * 14 13 11 16 16 C 1.35255 * 107.86644 * 179.89156 * 15 14 13 17 17 N 1.34963 * 107.85457 * 0.36719 * 16 15 14 18 18 C 1.46507 * 125.97341 * 179.73296 * 17 16 15 19 19 C 1.50700 * 109.47084 * 125.01951 * 18 17 16 20 20 H 1.08004 * 119.99798 * 359.97438 * 19 18 17 21 21 C 1.37868 * 119.99768 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00282 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00109 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46676 * 60.00033 * 23 21 19 25 25 H 1.48496 * 109.47038 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47104 * 300.00597 * 23 21 19 27 27 N 1.31206 * 125.97050 * 180.30012 * 14 13 11 28 28 C 1.46928 * 118.73841 * 53.31215 * 10 9 5 29 29 H 1.08995 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47141 * 300.06225 * 1 2 3 31 31 H 1.09006 * 109.46621 * 60.06526 * 1 2 3 32 32 H 1.09001 * 109.45981 * 178.60897 * 4 2 1 33 33 H 1.08995 * 109.46204 * 298.56923 * 4 2 1 34 34 H 1.09007 * 109.46752 * 295.00035 * 7 5 4 35 35 H 1.08996 * 109.46748 * 54.99687 * 7 5 4 36 36 H 0.96693 * 113.99993 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.50998 * 185.70015 * 9 5 4 38 38 H 1.09005 * 109.42964 * 65.43072 * 9 5 4 39 39 H 0.97003 * 119.99285 * 354.86980 * 13 11 10 40 40 H 1.08003 * 126.07153 * 0.02562 * 15 14 13 41 41 H 1.08000 * 126.06861 * 180.13792 * 16 15 14 42 42 H 1.09003 * 109.46336 * 245.01852 * 18 17 16 43 43 H 1.08994 * 109.46859 * 5.01295 * 18 17 16 44 44 H 0.97003 * 120.00234 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.58928 * 66.42502 * 28 10 9 46 46 H 1.09001 * 109.58242 * 186.71654 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 1.2481 5 6 1.5030 -2.1561 1.2653 6 1 0.4133 -2.1358 1.2534 7 6 1.9866 -2.8680 2.5304 8 8 1.3909 -4.1648 2.6045 9 6 2.0091 -2.9024 0.0323 10 7 1.6516 -2.1377 -1.1702 11 6 0.9741 -2.7211 -2.1788 12 8 0.7592 -2.1037 -3.2040 13 7 0.5347 -3.9888 -2.0509 14 6 -0.2662 -4.5574 -3.0513 15 6 -0.6847 -3.9236 -4.2321 16 6 -1.4365 -4.8039 -4.9315 17 7 -1.5012 -5.9493 -4.2206 18 6 -2.2210 -7.1645 -4.6100 19 6 -1.2728 -8.3357 -4.5980 20 1 -0.2374 -8.1895 -4.3277 21 6 -1.7271 -9.5938 -4.9319 22 7 -2.9879 -9.7718 -5.2615 23 14 -0.5517 -11.0456 -4.9178 24 1 0.0072 -11.2166 -3.5526 25 1 -1.2814 -12.2772 -5.3124 26 1 0.5538 -10.7968 -5.8775 27 7 -0.7605 -5.7727 -3.0448 28 6 2.0414 -0.7233 -1.2498 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 3.1305 -0.7447 1.2350 33 1 1.6987 -0.1965 2.1388 34 1 3.0717 -2.9679 2.4988 35 1 1.7007 -2.2861 3.4065 36 1 1.6536 -4.6744 3.3832 37 1 1.5474 -3.8889 -0.0112 38 1 3.0926 -3.0063 0.0906 39 1 0.7694 -4.5064 -1.2648 40 1 -0.4466 -2.9132 -4.5303 41 1 -1.9053 -4.6213 -5.8872 42 1 -3.0330 -7.3470 -3.9060 43 1 -2.6306 -7.0387 -5.6122 44 1 -3.3076 -10.6570 -5.4961 45 1 3.1275 -0.6458 -1.2981 46 1 1.6028 -0.2731 -2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364259414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:43 Heat of formation + Delta-G solvation = 6.662971 kcal Electronic energy + Delta-G solvation = -27626.206297 eV Core-core repulsion = 23745.986293 eV Total energy + Delta-G solvation = -3880.220003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98251 -40.08680 -38.44780 -36.82186 -34.77215 -33.82661 -33.11468 -32.51993 -30.75785 -29.21214 -27.34975 -26.67003 -26.15753 -25.59559 -23.05253 -21.97060 -21.35735 -20.35782 -19.58095 -18.91406 -18.00080 -17.55357 -16.66531 -16.51324 -16.06829 -15.62588 -15.45190 -15.05432 -14.54930 -14.43831 -14.35713 -14.06458 -13.93428 -13.64072 -13.49051 -13.35189 -12.73467 -12.51788 -12.29670 -12.16124 -11.84350 -11.75152 -11.66357 -11.46617 -11.26772 -11.00497 -10.83702 -10.82220 -10.68969 -10.37928 -10.34235 -10.20566 -9.97115 -9.59288 -9.43253 -8.76674 -8.58120 -8.01820 -7.33092 -6.19619 -4.24515 2.40431 2.73680 3.16614 3.28947 3.31707 3.36357 3.46520 3.77546 3.90428 4.14904 4.35642 4.37056 4.37693 4.56866 4.61681 4.82699 4.98818 5.05936 5.15121 5.15900 5.17571 5.27350 5.34119 5.44213 5.46013 5.59528 5.60484 5.65128 5.79016 5.86746 5.87907 5.90422 6.13356 6.24673 6.42854 6.61388 6.71864 6.89879 7.03602 7.14956 7.28859 7.57440 7.74323 7.86118 8.01105 8.13692 8.65401 8.73640 8.86368 9.40822 10.89002 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.002883 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.122792 B = 9709.169847 C =10787.615332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.107 4.107 5 C -0.107 4.107 6 H 0.089 0.911 7 C 0.082 3.918 8 O -0.571 6.571 9 C 0.118 3.882 10 N -0.625 5.625 11 C 0.718 3.282 12 O -0.567 6.567 13 N -0.644 5.644 14 C 0.276 3.724 15 C -0.286 4.286 16 C 0.050 3.950 17 N -0.321 5.321 18 C 0.259 3.741 19 C -0.528 4.528 20 H 0.068 0.932 21 C 0.062 3.938 22 N -0.896 5.896 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.308 5.308 28 C 0.133 3.867 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.381 0.619 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.406 0.594 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.267 0.733 45 H 0.065 0.935 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.872 19.289 15.685 27.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.103 0.897 4 C -0.144 4.144 5 C -0.126 4.126 6 H 0.107 0.893 7 C 0.003 3.997 8 O -0.376 6.376 9 C -0.005 4.005 10 N -0.363 5.363 11 C 0.419 3.581 12 O -0.443 6.443 13 N -0.296 5.296 14 C 0.022 3.978 15 C -0.318 4.318 16 C -0.100 4.100 17 N -0.103 5.103 18 C 0.142 3.858 19 C -0.566 4.566 20 H 0.086 0.914 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.735 3.265 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.201 1.201 27 N -0.139 5.139 28 C 0.010 3.990 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.229 0.771 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.244 0.756 40 H 0.177 0.823 41 H 0.184 0.816 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.142 18.588 14.903 25.894 hybrid contribution 0.995 -0.646 0.607 1.333 sum 11.137 17.943 15.510 26.202 Atomic orbital electron populations 1.21847 0.94524 1.02488 1.01624 1.21508 0.96943 0.99365 0.94662 0.89717 1.21519 1.00601 0.94112 0.98211 1.21511 1.02674 0.94828 0.93591 0.89272 1.22165 0.96281 0.84199 0.97016 1.86519 1.72707 1.28626 1.49787 1.21558 1.00191 0.95081 0.83686 1.47161 1.59816 1.11720 1.17621 1.15500 0.78412 0.80801 0.83369 1.90848 1.61966 1.63756 1.27683 1.41630 1.52301 1.13044 1.22659 1.18808 0.96303 0.92306 0.90379 1.21490 1.10490 1.03146 0.96649 1.22539 1.01346 0.87204 0.98864 1.49048 1.36800 1.12111 1.12355 1.19713 0.91598 0.78075 0.96432 1.21236 0.96585 0.91693 1.47087 0.91355 1.24940 0.95514 0.98920 0.94699 1.69914 1.14245 1.23684 1.45638 0.86389 0.80536 0.80795 0.78789 1.19937 1.21076 1.20061 1.77334 1.15315 1.14554 1.06657 1.21533 0.99193 0.79266 0.98976 0.92186 0.92829 0.92389 0.91441 0.91378 0.93439 0.93334 0.77141 0.89651 0.91256 0.75580 0.82287 0.81583 0.93792 0.92586 0.92318 0.91661 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.70 37.16 0.32 -0.96 16 2 C -0.11 -0.75 3.21 -90.50 -0.29 -1.04 16 3 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.11 -0.64 4.71 -26.69 -0.13 -0.76 16 5 C -0.11 -0.82 2.22 -90.72 -0.20 -1.02 16 6 H 0.09 0.86 6.33 -51.93 -0.33 0.53 16 7 C 0.08 0.51 6.43 37.16 0.24 0.75 16 8 O -0.57 -4.59 13.30 -35.23 -0.47 -5.06 16 9 C 0.12 1.11 5.52 -3.94 -0.02 1.09 16 10 N -0.63 -7.26 2.42 -178.76 -0.43 -7.70 16 11 C 0.72 11.56 8.26 -86.92 -0.72 10.84 16 12 O -0.57 -10.71 12.93 5.28 0.07 -10.64 16 13 N -0.64 -11.15 5.36 -15.51 -0.08 -11.23 16 14 C 0.28 5.90 8.10 -154.37 -1.25 4.65 16 15 C -0.29 -5.99 9.61 -39.83 -0.38 -6.37 16 16 C 0.05 1.05 11.44 -17.24 -0.20 0.86 16 17 N -0.32 -7.75 3.67 -62.55 -0.23 -7.98 16 18 C 0.26 6.77 6.26 -5.19 -0.03 6.73 16 19 C -0.53 -15.01 9.24 -34.44 -0.32 -15.32 16 20 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 22 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 23 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 N -0.31 -7.41 12.42 31.44 0.39 -7.02 16 28 C 0.13 1.25 5.82 -3.71 -0.02 1.23 16 29 H 0.06 0.65 5.97 -51.93 -0.31 0.34 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.24 8.14 -51.92 -0.42 -0.19 16 35 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.38 1.45 9.12 45.56 0.42 1.87 16 37 H 0.09 0.91 5.40 -51.93 -0.28 0.62 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.41 6.19 6.28 -40.82 -0.26 5.93 16 40 H 0.16 3.26 5.93 -52.48 -0.31 2.95 16 41 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 42 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 1.08 7.03 -51.93 -0.37 0.71 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -34.43 368.97 -8.63 -43.06 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.05 Total: 7.04 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -3.10 Total: 2.30 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.38 Total: -58.94 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.40 Total: -15.70 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.43 -8.63 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364259414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.720 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds