Wall clock time and date at job start Tue Mar 31 2020 14:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49875 * 2 1 4 4 C 1.53036 * 109.49787 * 120.09794 * 2 1 3 5 5 C 1.53040 * 109.53783 * 58.58760 * 4 2 1 6 6 H 1.08994 * 109.49680 * 301.41386 * 5 4 2 7 7 C 1.53005 * 109.49968 * 181.35125 * 5 4 2 8 8 O 1.42899 * 109.47311 * 175.00067 * 7 5 4 9 9 C 1.52759 * 109.38167 * 61.23870 * 5 4 2 10 10 N 1.46922 * 109.01045 * 305.58965 * 9 5 4 11 11 C 1.34777 * 120.62894 * 233.58116 * 10 9 5 12 12 O 1.21596 * 119.99631 * 184.73561 * 11 10 9 13 13 N 1.34774 * 120.00338 * 4.74207 * 11 10 9 14 14 C 1.40192 * 120.00163 * 174.60018 * 13 11 10 15 15 C 1.40396 * 125.97061 * 359.97438 * 14 13 11 16 16 C 1.35255 * 107.86644 * 179.89156 * 15 14 13 17 17 N 1.34963 * 107.85457 * 0.36719 * 16 15 14 18 18 C 1.46507 * 125.97341 * 179.73296 * 17 16 15 19 19 C 1.50700 * 109.47084 * 125.01951 * 18 17 16 20 20 H 1.08004 * 119.99798 * 359.97438 * 19 18 17 21 21 C 1.37868 * 119.99768 * 179.97438 * 19 18 17 22 22 N 1.31521 * 120.00282 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00109 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46676 * 60.00033 * 23 21 19 25 25 H 1.48496 * 109.47038 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47104 * 300.00597 * 23 21 19 27 27 N 1.31206 * 125.97050 * 180.30012 * 14 13 11 28 28 C 1.46928 * 118.73841 * 53.31215 * 10 9 5 29 29 H 1.08995 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47141 * 300.06225 * 1 2 3 31 31 H 1.09006 * 109.46621 * 60.06526 * 1 2 3 32 32 H 1.09001 * 109.45981 * 178.60897 * 4 2 1 33 33 H 1.08995 * 109.46204 * 298.56923 * 4 2 1 34 34 H 1.09007 * 109.46752 * 295.00035 * 7 5 4 35 35 H 1.08996 * 109.46748 * 54.99687 * 7 5 4 36 36 H 0.96693 * 113.99993 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.50998 * 185.70015 * 9 5 4 38 38 H 1.09005 * 109.42964 * 65.43072 * 9 5 4 39 39 H 0.97003 * 119.99285 * 354.86980 * 13 11 10 40 40 H 1.08003 * 126.07153 * 0.02562 * 15 14 13 41 41 H 1.08000 * 126.06861 * 180.13792 * 16 15 14 42 42 H 1.09003 * 109.46336 * 245.01852 * 18 17 16 43 43 H 1.08994 * 109.46859 * 5.01295 * 18 17 16 44 44 H 0.97003 * 120.00234 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.58928 * 66.42502 * 28 10 9 46 46 H 1.09001 * 109.58242 * 186.71654 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 1.2481 5 6 1.5030 -2.1561 1.2653 6 1 0.4133 -2.1358 1.2534 7 6 1.9866 -2.8680 2.5304 8 8 1.3909 -4.1648 2.6045 9 6 2.0091 -2.9024 0.0323 10 7 1.6516 -2.1377 -1.1702 11 6 0.9741 -2.7211 -2.1788 12 8 0.7592 -2.1037 -3.2040 13 7 0.5347 -3.9888 -2.0509 14 6 -0.2662 -4.5574 -3.0513 15 6 -0.6847 -3.9236 -4.2321 16 6 -1.4365 -4.8039 -4.9315 17 7 -1.5012 -5.9493 -4.2206 18 6 -2.2210 -7.1645 -4.6100 19 6 -1.2728 -8.3357 -4.5980 20 1 -0.2374 -8.1895 -4.3277 21 6 -1.7271 -9.5938 -4.9319 22 7 -2.9879 -9.7718 -5.2615 23 14 -0.5517 -11.0456 -4.9178 24 1 0.0072 -11.2166 -3.5526 25 1 -1.2814 -12.2772 -5.3124 26 1 0.5538 -10.7968 -5.8775 27 7 -0.7605 -5.7727 -3.0448 28 6 2.0414 -0.7233 -1.2498 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 3.1305 -0.7447 1.2350 33 1 1.6987 -0.1965 2.1388 34 1 3.0717 -2.9679 2.4988 35 1 1.7007 -2.2861 3.4065 36 1 1.6536 -4.6744 3.3832 37 1 1.5474 -3.8889 -0.0112 38 1 3.0926 -3.0063 0.0906 39 1 0.7694 -4.5064 -1.2648 40 1 -0.4466 -2.9132 -4.5303 41 1 -1.9053 -4.6213 -5.8872 42 1 -3.0330 -7.3470 -3.9060 43 1 -2.6306 -7.0387 -5.6122 44 1 -3.3076 -10.6570 -5.4961 45 1 3.1275 -0.6458 -1.2981 46 1 1.6028 -0.2731 -2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364259414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:42 Heat of formation + Delta-G solvation = -17.062093 kcal Electronic energy + Delta-G solvation = -27627.235093 eV Core-core repulsion = 23745.986293 eV Total energy + Delta-G solvation = -3881.248799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34238 -41.43317 -39.43186 -37.45088 -36.27752 -35.41032 -34.50258 -33.22475 -32.57292 -30.94035 -28.70055 -27.93394 -26.75295 -26.59867 -24.91866 -23.02041 -22.44755 -21.85795 -20.92219 -19.81942 -19.14177 -18.68510 -18.16614 -18.06672 -17.26768 -16.87994 -16.53943 -16.24580 -16.09360 -15.61066 -15.34612 -15.18720 -14.97637 -14.52029 -14.47453 -14.28846 -14.16799 -14.14722 -13.78336 -13.64232 -13.20647 -12.93756 -12.72857 -12.62870 -12.30406 -12.28405 -12.13515 -12.04470 -11.85185 -11.65048 -11.45315 -11.40198 -11.36729 -10.99484 -10.82257 -10.71869 -9.84102 -9.64485 -9.03441 -8.32549 -6.47043 1.04612 1.14119 1.37897 1.40336 1.49109 1.67591 2.03039 2.35484 2.37792 2.79357 2.98765 3.32394 3.73923 3.77541 3.89710 3.97029 4.00827 4.18894 4.25162 4.38587 4.52418 4.55815 4.62725 4.69207 4.73639 4.74217 4.80637 4.86785 4.89792 4.93521 4.94689 5.00466 5.04327 5.13338 5.17814 5.24782 5.29993 5.47452 5.55940 5.59347 5.72660 5.84611 5.95338 6.29136 6.57708 6.66664 6.97028 7.09585 7.22785 7.37055 8.74808 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.002883 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.122792 B = 9709.169847 C =10787.615332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.112 0.888 4 C -0.100 4.100 5 C -0.104 4.104 6 H 0.063 0.937 7 C 0.082 3.918 8 O -0.600 6.600 9 C 0.113 3.887 10 N -0.613 5.613 11 C 0.712 3.288 12 O -0.599 6.599 13 N -0.641 5.641 14 C 0.283 3.717 15 C -0.292 4.292 16 C 0.058 3.942 17 N -0.344 5.344 18 C 0.273 3.727 19 C -0.549 4.549 20 H 0.051 0.949 21 C 0.019 3.981 22 N -0.921 5.921 23 Si 0.972 3.028 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.270 1.270 27 N -0.349 5.349 28 C 0.126 3.874 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.414 0.586 40 H 0.166 0.834 41 H 0.203 0.797 42 H 0.021 0.979 43 H 0.060 0.940 44 H 0.273 0.727 45 H 0.090 0.910 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.977 20.346 17.057 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.130 0.870 4 C -0.138 4.138 5 C -0.123 4.123 6 H 0.082 0.918 7 C 0.004 3.996 8 O -0.409 6.409 9 C -0.009 4.009 10 N -0.349 5.349 11 C 0.413 3.587 12 O -0.477 6.477 13 N -0.295 5.295 14 C 0.027 3.973 15 C -0.324 4.324 16 C -0.091 4.091 17 N -0.126 5.126 18 C 0.155 3.845 19 C -0.587 4.587 20 H 0.070 0.930 21 C -0.182 4.182 22 N -0.559 5.559 23 Si 0.796 3.204 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.195 1.195 27 N -0.180 5.180 28 C 0.004 3.996 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.247 0.753 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.254 0.746 40 H 0.183 0.817 41 H 0.220 0.780 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.279 19.680 16.336 28.371 hybrid contribution 0.360 -0.848 0.246 0.954 sum 12.639 18.832 16.582 28.095 Atomic orbital electron populations 1.21831 0.96126 1.00708 1.01716 1.21512 0.95445 1.00657 0.94091 0.87041 1.21516 1.01759 0.92482 0.98004 1.21491 1.01211 0.96213 0.93429 0.91814 1.22240 0.97203 0.83574 0.96558 1.86478 1.73481 1.29733 1.51162 1.21772 1.01403 0.94312 0.83411 1.47267 1.58026 1.12662 1.16983 1.15722 0.78703 0.80192 0.84048 1.90809 1.63385 1.64230 1.29308 1.41702 1.51896 1.13735 1.22165 1.19127 0.95433 0.91602 0.91108 1.21654 1.10674 1.03379 0.96666 1.23156 1.00410 0.85812 0.99676 1.48834 1.38036 1.12451 1.13299 1.19336 0.90801 0.78616 0.95787 1.21378 0.96215 0.93186 1.47968 0.93038 1.25746 0.97162 1.01352 0.93905 1.69992 1.15608 1.24644 1.45699 0.85399 0.78567 0.77692 0.78770 1.19844 1.19639 1.19467 1.77252 1.17069 1.16205 1.07514 1.21805 1.00534 0.77736 0.99485 0.94883 0.91275 0.93755 0.89302 0.89644 0.91483 0.91746 0.75276 0.91388 0.88961 0.74611 0.81687 0.78032 0.96139 0.92254 0.91797 0.89224 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.70 71.98 0.63 -1.81 16 2 C -0.10 -1.15 3.21 -10.72 -0.03 -1.18 16 3 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.10 -0.83 4.71 30.62 0.14 -0.69 16 5 C -0.10 -1.40 2.22 -10.86 -0.02 -1.42 16 6 H 0.06 1.20 6.33 -2.39 -0.02 1.19 16 7 C 0.08 0.82 6.43 71.98 0.46 1.28 16 8 O -0.60 -8.93 13.30 -148.98 -1.98 -10.91 16 9 C 0.11 1.98 5.52 86.22 0.48 2.45 16 10 N -0.61 -13.82 2.42 -837.73 -2.02 -15.84 16 11 C 0.71 23.22 8.26 179.05 1.48 24.70 16 12 O -0.60 -23.04 12.93 -4.02 -0.05 -23.10 16 13 N -0.64 -22.76 5.36 -321.24 -1.72 -24.48 16 14 C 0.28 12.40 8.10 133.31 1.08 13.48 16 15 C -0.29 -12.39 9.61 22.11 0.21 -12.18 16 16 C 0.06 2.43 11.44 83.52 0.96 3.39 16 17 N -0.34 -17.03 3.67 -351.82 -1.29 -18.32 16 18 C 0.27 14.70 6.26 85.63 0.54 15.24 16 19 C -0.55 -31.94 9.24 25.60 0.24 -31.71 16 20 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 21 C 0.02 1.06 5.46 84.65 0.46 1.52 16 22 N -0.92 -53.19 13.29 21.45 0.28 -52.91 16 23 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 N -0.35 -17.39 12.42 -54.44 -0.68 -18.07 16 28 C 0.13 2.16 5.82 86.36 0.50 2.67 16 29 H 0.03 0.72 5.97 -2.39 -0.01 0.71 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.40 2.51 9.12 -74.06 -0.68 1.84 16 37 H 0.07 1.44 5.40 -2.39 -0.01 1.42 16 38 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.41 13.04 6.28 -92.71 -0.58 12.46 16 40 H 0.17 6.83 5.93 -2.91 -0.02 6.81 16 41 H 0.20 6.68 8.06 -2.91 -0.02 6.65 16 42 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 3.10 8.07 -2.39 -0.02 3.08 16 44 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.08 1.66 7.03 -2.39 -0.02 1.64 16 Total: -1.00 -76.31 368.97 1.44 -74.88 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.24 Total: 26.52 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 7.12 Total: 15.73 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -5.43 Total: -129.62 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -2.03 Total: -34.01 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -76.31 1.44 -74.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364259414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.817 kcal (2) G-P(sol) polarization free energy of solvation -76.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds