Wall clock time and date at job start Tue Mar 31 2020 14:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.49585 * 2 1 4 4 C 1.53040 * 109.52501 * 239.92112 * 2 1 3 5 5 C 1.53041 * 109.53576 * 301.39380 * 4 2 1 6 6 H 1.08997 * 109.49967 * 58.58793 * 5 4 2 7 7 C 1.53001 * 109.52542 * 178.66946 * 5 4 2 8 8 O 1.42896 * 109.47606 * 184.85524 * 7 5 4 9 9 C 1.53191 * 109.31535 * 298.63622 * 5 4 2 10 10 N 1.46927 * 108.77654 * 54.63410 * 9 5 4 11 11 C 1.34770 * 120.63232 * 126.36619 * 10 9 5 12 12 O 1.21597 * 120.00221 * 174.99159 * 11 10 9 13 13 N 1.34779 * 120.00234 * 354.99086 * 11 10 9 14 14 C 1.40195 * 120.00284 * 185.20813 * 13 11 10 15 15 C 1.40396 * 125.97411 * 359.97438 * 14 13 11 16 16 C 1.35245 * 107.87091 * 180.02562 * 15 14 13 17 17 N 1.34960 * 107.85331 * 0.02562 * 16 15 14 18 18 C 1.46509 * 125.97610 * 180.02562 * 17 16 15 19 19 C 1.50688 * 109.47433 * 124.99636 * 18 17 16 20 20 H 1.08005 * 120.00158 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00204 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99538 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00263 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47571 * 89.99883 * 23 21 19 25 25 H 1.48501 * 109.47063 * 210.00178 * 23 21 19 26 26 H 1.48502 * 109.46837 * 329.99512 * 23 21 19 27 27 N 1.31214 * 125.96861 * 179.69466 * 14 13 11 28 28 C 1.46928 * 118.73878 * 306.39526 * 10 9 5 29 29 H 1.08999 * 109.47278 * 300.00082 * 1 2 3 30 30 H 1.09003 * 109.47254 * 60.00066 * 1 2 3 31 31 H 1.09002 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46230 * 61.41558 * 4 2 1 33 33 H 1.09000 * 109.45771 * 181.37900 * 4 2 1 34 34 H 1.09004 * 109.46864 * 304.85586 * 7 5 4 35 35 H 1.09002 * 109.47216 * 64.85024 * 7 5 4 36 36 H 0.96698 * 114.00211 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.58769 * 294.85110 * 9 5 4 38 38 H 1.09001 * 109.70705 * 174.49293 * 9 5 4 39 39 H 0.97002 * 119.99325 * 5.21326 * 13 11 10 40 40 H 1.08007 * 126.06588 * 0.02562 * 15 14 13 41 41 H 1.07991 * 126.07275 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47191 * 245.00410 * 18 17 16 43 43 H 1.09004 * 109.46600 * 4.99531 * 18 17 16 44 44 H 0.97003 * 119.99612 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.58781 * 293.81917 * 28 10 9 46 46 H 1.08997 * 109.70424 * 173.46399 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7229 -1.2482 5 6 1.5044 -2.1559 -1.2658 6 1 0.4146 -2.1362 -1.2541 7 6 1.9887 -2.8680 -2.5304 8 8 1.3961 -4.1663 -2.6027 9 6 2.0154 -2.9038 -0.0304 10 7 1.6523 -2.1380 1.1698 11 6 0.9747 -2.7218 2.1780 12 8 0.7595 -2.1048 3.2035 13 7 0.5356 -3.9896 2.0496 14 6 -0.2621 -4.5600 3.0515 15 6 -0.6767 -3.9286 4.2349 16 6 -1.4278 -4.8095 4.9341 17 7 -1.4886 -5.9561 4.2248 18 6 -2.2023 -7.1739 4.6169 19 6 -3.1596 -7.5696 3.5224 20 1 -3.2291 -6.9738 2.6242 21 6 -3.9467 -8.6923 3.6675 22 7 -3.8617 -9.4181 4.7610 23 14 -5.1328 -9.1833 2.3105 24 1 -4.4462 -10.0918 1.3575 25 1 -6.3024 -9.8801 2.9035 26 1 -5.5929 -7.9680 1.5917 27 7 -0.7558 -5.7757 3.0446 28 6 2.0413 -0.7234 1.2498 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6994 -0.1959 -2.1389 33 1 3.1312 -0.7437 -1.2347 34 1 1.7007 -2.2877 -3.4070 35 1 3.0740 -2.9652 -2.4996 36 1 1.6594 -4.6760 -3.3811 37 1 3.0994 -3.0035 -0.0860 38 1 1.5593 -3.8927 0.0154 39 1 0.7716 -4.5073 1.2640 40 1 -0.4382 -2.9185 4.5339 41 1 -1.8959 -4.6278 5.8903 42 1 -1.4854 -7.9784 4.7810 43 1 -2.7579 -6.9893 5.5363 44 1 -4.4157 -10.2078 4.8632 45 1 3.1274 -0.6453 1.2985 46 1 1.6022 -0.2712 2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364259418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:46 Heat of formation + Delta-G solvation = 6.619976 kcal Electronic energy + Delta-G solvation = -27675.840568 eV Core-core repulsion = 23795.618700 eV Total energy + Delta-G solvation = -3880.221868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.97384 -40.07973 -38.43489 -36.81089 -34.76916 -33.82437 -33.11368 -32.49499 -30.75698 -29.21228 -27.33631 -26.66554 -26.14870 -25.58906 -23.05166 -21.96506 -21.35043 -20.35448 -19.57592 -18.91214 -17.99714 -17.54251 -16.66898 -16.50460 -16.04552 -15.68213 -15.43875 -14.98362 -14.55322 -14.44917 -14.29801 -14.18378 -13.83329 -13.63809 -13.52006 -13.32191 -12.72753 -12.51813 -12.27422 -12.19459 -11.85195 -11.70401 -11.66023 -11.45451 -11.24541 -11.00593 -10.85426 -10.81525 -10.68309 -10.35805 -10.35059 -10.20609 -9.97224 -9.57219 -9.42819 -8.76434 -8.58573 -8.01749 -7.32992 -6.19861 -4.24519 2.40847 2.73257 3.17104 3.27111 3.32558 3.37726 3.46902 3.78663 3.90474 4.15186 4.36475 4.37167 4.38378 4.57756 4.62587 4.83452 4.99792 5.06445 5.15080 5.16118 5.18583 5.28146 5.35170 5.44577 5.46671 5.60222 5.61249 5.65462 5.80419 5.87810 5.89220 5.90718 6.15131 6.25163 6.42946 6.61489 6.72007 6.89936 7.03674 7.15022 7.30205 7.57485 7.74580 7.86082 8.01210 8.13597 8.65468 8.73804 8.86731 9.40863 10.88840 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003062 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.545535 B = 9142.539736 C =10361.778495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.107 4.107 5 C -0.107 4.107 6 H 0.090 0.910 7 C 0.082 3.918 8 O -0.570 6.570 9 C 0.119 3.881 10 N -0.625 5.625 11 C 0.718 3.282 12 O -0.567 6.567 13 N -0.644 5.644 14 C 0.276 3.724 15 C -0.286 4.286 16 C 0.050 3.950 17 N -0.321 5.321 18 C 0.259 3.741 19 C -0.527 4.527 20 H 0.069 0.931 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.908 3.092 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 N -0.307 5.307 28 C 0.134 3.866 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.381 0.619 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.406 0.594 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.267 0.733 45 H 0.065 0.935 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.444 17.857 -13.655 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.103 0.897 4 C -0.144 4.144 5 C -0.126 4.126 6 H 0.108 0.892 7 C 0.003 3.997 8 O -0.376 6.376 9 C -0.005 4.005 10 N -0.363 5.363 11 C 0.419 3.581 12 O -0.443 6.443 13 N -0.296 5.296 14 C 0.022 3.978 15 C -0.318 4.318 16 C -0.100 4.100 17 N -0.103 5.103 18 C 0.141 3.859 19 C -0.565 4.565 20 H 0.087 0.913 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.735 3.265 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.197 1.197 27 N -0.139 5.139 28 C 0.011 3.989 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.228 0.772 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.244 0.756 40 H 0.177 0.823 41 H 0.184 0.816 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.778 17.135 -12.838 25.461 hybrid contribution -0.227 -0.162 -1.300 1.329 sum 13.551 16.973 -14.137 25.915 Atomic orbital electron populations 1.21850 0.94493 1.02536 1.01641 1.21509 0.96961 0.99350 0.94659 0.89729 1.21519 1.00567 0.94119 0.98224 1.21590 1.02693 0.94786 0.93548 0.89218 1.22164 0.96270 0.84189 0.97047 1.86524 1.72847 1.28468 1.49769 1.21645 1.00072 0.95066 0.83698 1.47161 1.59736 1.11651 1.17777 1.15501 0.78415 0.80795 0.83374 1.90847 1.61969 1.63771 1.27688 1.41633 1.52435 1.12991 1.22578 1.18812 0.96175 0.92581 0.90240 1.21488 1.10560 1.03066 0.96647 1.22533 1.01010 0.87304 0.99106 1.49048 1.36911 1.12446 1.11911 1.19718 0.91069 0.78265 0.96805 1.21276 1.20895 1.10850 1.03496 0.91292 1.24945 0.97210 0.95729 0.96229 1.69925 1.40382 1.16876 1.26286 0.86329 0.79997 0.78730 0.81459 1.20349 1.21020 1.19721 1.77335 1.15439 1.15135 1.05942 1.21524 0.99155 0.79267 0.98996 0.92373 0.92827 0.92159 0.91377 0.91455 0.93350 0.93462 0.77155 0.91253 0.89652 0.75583 0.82285 0.81586 0.93796 0.92586 0.92383 0.91675 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.71 37.16 0.32 -1.02 16 2 C -0.11 -0.77 3.21 -90.50 -0.29 -1.06 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.65 4.71 -26.69 -0.13 -0.78 16 5 C -0.11 -0.84 2.23 -90.50 -0.20 -1.04 16 6 H 0.09 0.90 6.34 -51.93 -0.33 0.57 16 7 C 0.08 0.52 6.43 37.16 0.24 0.76 16 8 O -0.57 -4.71 13.31 -35.23 -0.47 -5.18 16 9 C 0.12 1.12 5.55 -3.71 -0.02 1.09 16 10 N -0.63 -7.28 2.41 -178.50 -0.43 -7.71 16 11 C 0.72 11.56 8.26 -86.92 -0.72 10.84 16 12 O -0.57 -10.70 12.93 5.28 0.07 -10.64 16 13 N -0.64 -11.14 5.36 -15.51 -0.08 -11.23 16 14 C 0.28 5.90 8.11 -154.36 -1.25 4.65 16 15 C -0.29 -5.99 9.61 -39.84 -0.38 -6.37 16 16 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 17 N -0.32 -7.75 3.67 -62.56 -0.23 -7.98 16 18 C 0.26 6.76 6.26 -5.19 -0.03 6.72 16 19 C -0.53 -14.98 9.23 -34.44 -0.32 -15.30 16 20 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 23 Si 0.91 21.73 29.54 -169.99 -5.02 16.71 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 27 N -0.31 -7.41 12.41 31.44 0.39 -7.02 16 28 C 0.13 1.26 5.81 -3.71 -0.02 1.24 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.38 1.53 9.12 45.56 0.42 1.94 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.91 5.41 -51.93 -0.28 0.63 16 39 H 0.41 6.18 6.28 -40.82 -0.26 5.93 16 40 H 0.16 3.26 5.93 -52.48 -0.31 2.95 16 41 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 42 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 44 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.10 1.08 7.04 -51.93 -0.37 0.72 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -34.46 369.01 -8.62 -43.09 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.05 Total: 7.19 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -3.09 Total: 2.21 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.38 Total: -58.94 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.40 Total: -15.82 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.46 -8.62 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364259418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.706 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds