Wall clock time and date at job start Tue Mar 31 2020 14:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.49585 * 2 1 4 4 C 1.53040 * 109.52501 * 239.92112 * 2 1 3 5 5 C 1.53041 * 109.53576 * 301.39380 * 4 2 1 6 6 H 1.08997 * 109.49967 * 58.58793 * 5 4 2 7 7 C 1.53001 * 109.52542 * 178.66946 * 5 4 2 8 8 O 1.42896 * 109.47606 * 184.85524 * 7 5 4 9 9 C 1.53191 * 109.31535 * 298.63622 * 5 4 2 10 10 N 1.46927 * 108.77654 * 54.63410 * 9 5 4 11 11 C 1.34770 * 120.63232 * 126.36619 * 10 9 5 12 12 O 1.21597 * 120.00221 * 174.99159 * 11 10 9 13 13 N 1.34779 * 120.00234 * 354.99086 * 11 10 9 14 14 C 1.40195 * 120.00284 * 185.20813 * 13 11 10 15 15 C 1.40396 * 125.97411 * 359.97438 * 14 13 11 16 16 C 1.35245 * 107.87091 * 180.02562 * 15 14 13 17 17 N 1.34960 * 107.85331 * 0.02562 * 16 15 14 18 18 C 1.46509 * 125.97610 * 180.02562 * 17 16 15 19 19 C 1.50688 * 109.47433 * 124.99636 * 18 17 16 20 20 H 1.08005 * 120.00158 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00204 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99538 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00263 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47571 * 89.99883 * 23 21 19 25 25 H 1.48501 * 109.47063 * 210.00178 * 23 21 19 26 26 H 1.48502 * 109.46837 * 329.99512 * 23 21 19 27 27 N 1.31214 * 125.96861 * 179.69466 * 14 13 11 28 28 C 1.46928 * 118.73878 * 306.39526 * 10 9 5 29 29 H 1.08999 * 109.47278 * 300.00082 * 1 2 3 30 30 H 1.09003 * 109.47254 * 60.00066 * 1 2 3 31 31 H 1.09002 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46230 * 61.41558 * 4 2 1 33 33 H 1.09000 * 109.45771 * 181.37900 * 4 2 1 34 34 H 1.09004 * 109.46864 * 304.85586 * 7 5 4 35 35 H 1.09002 * 109.47216 * 64.85024 * 7 5 4 36 36 H 0.96698 * 114.00211 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.58769 * 294.85110 * 9 5 4 38 38 H 1.09001 * 109.70705 * 174.49293 * 9 5 4 39 39 H 0.97002 * 119.99325 * 5.21326 * 13 11 10 40 40 H 1.08007 * 126.06588 * 0.02562 * 15 14 13 41 41 H 1.07991 * 126.07275 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47191 * 245.00410 * 18 17 16 43 43 H 1.09004 * 109.46600 * 4.99531 * 18 17 16 44 44 H 0.97003 * 119.99612 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.58781 * 293.81917 * 28 10 9 46 46 H 1.08997 * 109.70424 * 173.46399 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7229 -1.2482 5 6 1.5044 -2.1559 -1.2658 6 1 0.4146 -2.1362 -1.2541 7 6 1.9887 -2.8680 -2.5304 8 8 1.3961 -4.1663 -2.6027 9 6 2.0154 -2.9038 -0.0304 10 7 1.6523 -2.1380 1.1698 11 6 0.9747 -2.7218 2.1780 12 8 0.7595 -2.1048 3.2035 13 7 0.5356 -3.9896 2.0496 14 6 -0.2621 -4.5600 3.0515 15 6 -0.6767 -3.9286 4.2349 16 6 -1.4278 -4.8095 4.9341 17 7 -1.4886 -5.9561 4.2248 18 6 -2.2023 -7.1739 4.6169 19 6 -3.1596 -7.5696 3.5224 20 1 -3.2291 -6.9738 2.6242 21 6 -3.9467 -8.6923 3.6675 22 7 -3.8617 -9.4181 4.7610 23 14 -5.1328 -9.1833 2.3105 24 1 -4.4462 -10.0918 1.3575 25 1 -6.3024 -9.8801 2.9035 26 1 -5.5929 -7.9680 1.5917 27 7 -0.7558 -5.7757 3.0446 28 6 2.0413 -0.7234 1.2498 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6994 -0.1959 -2.1389 33 1 3.1312 -0.7437 -1.2347 34 1 1.7007 -2.2877 -3.4070 35 1 3.0740 -2.9652 -2.4996 36 1 1.6594 -4.6760 -3.3811 37 1 3.0994 -3.0035 -0.0860 38 1 1.5593 -3.8927 0.0154 39 1 0.7716 -4.5073 1.2640 40 1 -0.4382 -2.9185 4.5339 41 1 -1.8959 -4.6278 5.8903 42 1 -1.4854 -7.9784 4.7810 43 1 -2.7579 -6.9893 5.5363 44 1 -4.4157 -10.2078 4.8632 45 1 3.1274 -0.6453 1.2985 46 1 1.6022 -0.2712 2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364259418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:45 Heat of formation + Delta-G solvation = -17.155359 kcal Electronic energy + Delta-G solvation = -27676.871544 eV Core-core repulsion = 23795.618700 eV Total energy + Delta-G solvation = -3881.252844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.33955 -41.42657 -39.42161 -37.45237 -36.27576 -35.41223 -34.50518 -33.20921 -32.57291 -30.94064 -28.70179 -27.93473 -26.75326 -26.59578 -24.91925 -23.02144 -22.44720 -21.85590 -20.91971 -19.82142 -19.14167 -18.68829 -18.16739 -18.06820 -17.25578 -16.91320 -16.55784 -16.20751 -15.95844 -15.80157 -15.28816 -15.18514 -14.97658 -14.54628 -14.45988 -14.27932 -14.21365 -14.10152 -13.76678 -13.66203 -13.19150 -12.94694 -12.74317 -12.62905 -12.30629 -12.29691 -12.11978 -12.06674 -11.86034 -11.63413 -11.43662 -11.41950 -11.36416 -10.99505 -10.82293 -10.72456 -9.83835 -9.64299 -9.03352 -8.33069 -6.47249 1.07135 1.11320 1.37407 1.38516 1.50121 1.68155 2.03145 2.35010 2.38086 2.79529 2.98303 3.32291 3.74013 3.77047 3.89651 3.96973 4.00685 4.18888 4.25177 4.38281 4.51949 4.55752 4.62602 4.68917 4.73576 4.73951 4.80633 4.86604 4.89658 4.93544 4.94561 5.00417 5.04024 5.13195 5.17433 5.24652 5.29758 5.47163 5.55940 5.59351 5.72714 5.84547 5.95373 6.29058 6.57832 6.66787 6.97048 7.09649 7.22582 7.37180 8.74519 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003062 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.545535 B = 9142.539736 C =10361.778495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.112 0.888 4 C -0.100 4.100 5 C -0.105 4.105 6 H 0.062 0.938 7 C 0.082 3.918 8 O -0.600 6.600 9 C 0.114 3.886 10 N -0.613 5.613 11 C 0.712 3.288 12 O -0.599 6.599 13 N -0.641 5.641 14 C 0.283 3.717 15 C -0.292 4.292 16 C 0.058 3.942 17 N -0.344 5.344 18 C 0.273 3.727 19 C -0.548 4.548 20 H 0.050 0.950 21 C 0.019 3.981 22 N -0.920 5.920 23 Si 0.972 3.028 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.274 1.274 27 N -0.349 5.349 28 C 0.127 3.873 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.414 0.586 40 H 0.166 0.834 41 H 0.203 0.797 42 H 0.021 0.979 43 H 0.060 0.940 44 H 0.273 0.727 45 H 0.091 0.909 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.553 19.311 -15.594 29.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.130 0.870 4 C -0.137 4.137 5 C -0.124 4.124 6 H 0.080 0.920 7 C 0.004 3.996 8 O -0.409 6.409 9 C -0.009 4.009 10 N -0.350 5.350 11 C 0.413 3.587 12 O -0.477 6.477 13 N -0.295 5.295 14 C 0.027 3.973 15 C -0.324 4.324 16 C -0.091 4.091 17 N -0.126 5.126 18 C 0.154 3.846 19 C -0.586 4.586 20 H 0.069 0.931 21 C -0.181 4.181 22 N -0.559 5.559 23 Si 0.796 3.204 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.199 1.199 27 N -0.180 5.180 28 C 0.005 3.995 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.247 0.753 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.254 0.746 40 H 0.183 0.817 41 H 0.220 0.780 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.933 18.616 -14.830 28.097 hybrid contribution -0.491 -0.515 -0.727 1.017 sum 14.441 18.101 -15.557 27.897 Atomic orbital electron populations 1.21837 0.96266 1.00650 1.01690 1.21515 0.95312 1.00702 0.94181 0.87007 1.21516 1.01811 0.92440 0.97965 1.21573 1.01104 0.96242 0.93499 0.91987 1.22240 0.97287 0.83517 0.96537 1.86483 1.73645 1.29598 1.51149 1.21862 1.01404 0.94241 0.83343 1.47268 1.57960 1.12595 1.17131 1.15726 0.78705 0.80188 0.84059 1.90808 1.63380 1.64241 1.29306 1.41705 1.52042 1.13681 1.22075 1.19133 0.95304 0.91875 0.90976 1.21654 1.10747 1.03302 0.96673 1.23150 1.00054 0.85932 0.99918 1.48835 1.38158 1.12811 1.12820 1.19340 0.90170 0.78693 0.96360 1.21399 1.22177 1.11454 1.03617 0.93136 1.25738 0.98562 0.95366 0.98481 1.69996 1.41036 1.17203 1.27661 0.85348 0.78141 0.78290 0.78639 1.19733 1.19475 1.19874 1.77254 1.17152 1.16773 1.06847 1.21796 1.00590 0.77719 0.99419 0.93757 0.91344 0.94986 0.89737 0.89158 0.91859 0.91336 0.75282 0.88744 0.91406 0.74612 0.81687 0.78030 0.96069 0.92246 0.91797 0.89062 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.71 71.98 0.63 -1.94 16 2 C -0.10 -1.18 3.21 -10.72 -0.03 -1.21 16 3 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.10 -0.86 4.71 30.62 0.14 -0.71 16 5 C -0.10 -1.45 2.23 -10.72 -0.02 -1.48 16 6 H 0.06 1.22 6.34 -2.39 -0.02 1.21 16 7 C 0.08 0.84 6.43 71.98 0.46 1.30 16 8 O -0.60 -9.20 13.31 -148.98 -1.98 -11.18 16 9 C 0.11 1.98 5.55 86.36 0.48 2.46 16 10 N -0.61 -13.82 2.41 -836.91 -2.02 -15.84 16 11 C 0.71 23.22 8.26 179.06 1.48 24.70 16 12 O -0.60 -23.02 12.93 -4.02 -0.05 -23.07 16 13 N -0.64 -22.77 5.36 -321.23 -1.72 -24.49 16 14 C 0.28 12.40 8.11 133.31 1.08 13.48 16 15 C -0.29 -12.41 9.61 22.10 0.21 -12.19 16 16 C 0.06 2.43 11.44 83.52 0.96 3.39 16 17 N -0.34 -17.04 3.67 -351.85 -1.29 -18.33 16 18 C 0.27 14.68 6.26 85.63 0.54 15.22 16 19 C -0.55 -31.94 9.23 25.60 0.24 -31.70 16 20 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 21 C 0.02 1.07 5.46 84.66 0.46 1.53 16 22 N -0.92 -53.11 13.29 21.45 0.28 -52.83 16 23 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 27 N -0.35 -17.39 12.41 -54.44 -0.68 -18.07 16 28 C 0.13 2.17 5.81 86.36 0.50 2.67 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.03 0.73 5.97 -2.39 -0.01 0.72 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.40 2.66 9.12 -74.06 -0.68 1.98 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.43 5.41 -2.39 -0.01 1.42 16 39 H 0.41 13.04 6.28 -92.71 -0.58 12.45 16 40 H 0.17 6.83 5.93 -2.91 -0.02 6.82 16 41 H 0.20 6.68 8.06 -2.92 -0.02 6.65 16 42 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 3.10 8.07 -2.38 -0.02 3.08 16 44 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.08 1.66 7.04 -2.39 -0.02 1.64 16 Total: -1.00 -76.53 369.01 1.44 -75.09 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.24 Total: 26.54 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 7.12 Total: 15.51 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -5.42 Total: -129.56 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -2.03 Total: -34.25 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -76.53 1.44 -75.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364259418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.930 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds