Wall clock time and date at job start Tue Mar 31 2020 14:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00337 * 2 1 4 4 H 1.08996 * 109.45608 * 329.97341 * 3 2 1 5 5 C 1.53039 * 109.45961 * 89.92498 * 3 2 1 6 6 C 1.53194 * 109.31385 * 181.38834 * 5 3 2 7 7 N 1.46930 * 108.77553 * 305.36636 * 6 5 3 8 8 C 1.34777 * 120.63334 * 233.62818 * 7 6 5 9 9 O 1.21589 * 119.99607 * 174.75376 * 8 7 6 10 10 N 1.34767 * 119.99748 * 354.75560 * 8 7 6 11 11 C 1.40198 * 119.99811 * 185.13100 * 10 8 7 12 12 C 1.40399 * 125.97195 * 359.97438 * 11 10 8 13 13 C 1.35247 * 107.86904 * 180.02562 * 12 11 10 14 14 N 1.34967 * 107.85456 * 359.97438 * 13 12 11 15 15 C 1.46503 * 125.97236 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46901 * 125.00021 * 15 14 13 17 17 H 1.08003 * 120.00580 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99812 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00206 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00051 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47297 * 59.99977 * 20 18 16 22 22 H 1.48498 * 109.47541 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47228 * 300.00228 * 20 18 16 24 24 N 1.31214 * 125.97088 * 179.68785 * 11 10 8 25 25 C 1.46934 * 118.73496 * 53.60761 * 7 6 5 26 26 C 1.53035 * 109.46302 * 209.99542 * 3 2 1 27 27 H 1.08999 * 109.49582 * 58.66416 * 26 3 2 28 28 C 1.52997 * 109.50250 * 298.56578 * 26 3 2 29 29 H 1.09002 * 109.46808 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47218 * 299.99791 * 1 2 3 31 31 H 1.08999 * 109.47036 * 60.00360 * 1 2 3 32 32 H 1.09000 * 109.50408 * 301.34371 * 5 3 2 33 33 H 1.09006 * 109.49690 * 61.44111 * 5 3 2 34 34 H 1.08997 * 109.58569 * 65.15502 * 6 5 3 35 35 H 1.08999 * 109.59011 * 185.58255 * 6 5 3 36 36 H 0.97001 * 120.00453 * 5.12378 * 10 8 7 37 37 H 1.08003 * 126.06635 * 359.97438 * 12 11 10 38 38 H 1.07995 * 126.07429 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47156 * 244.99783 * 15 14 13 40 40 H 1.08997 * 109.47396 * 5.00068 * 15 14 13 41 41 H 0.97003 * 120.00365 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.58370 * 186.60404 * 25 7 6 43 43 H 1.09003 * 109.58581 * 66.17933 * 25 7 6 44 44 H 1.08997 * 109.46836 * 300.16239 * 28 26 3 45 45 H 1.09007 * 109.46643 * 60.15621 * 28 26 3 46 46 H 1.08994 * 109.47703 * 180.15960 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9990 -0.5143 5 6 2.2159 1.7719 1.4430 6 6 2.8070 3.1853 1.4392 7 7 4.0302 3.1842 0.6252 8 6 5.1916 3.6452 1.1302 9 8 6.2160 3.5515 0.4820 10 7 5.2173 4.2100 2.3535 11 6 6.4014 4.7860 2.8349 12 6 7.6270 4.8441 2.1525 13 6 8.5172 5.4756 2.9511 14 7 7.8837 5.8069 4.0959 15 6 8.4788 6.5065 5.2373 16 6 7.6625 7.7325 5.5562 17 1 6.7881 7.9673 4.9673 18 6 8.0319 8.5544 6.5998 19 7 9.0969 8.2688 7.3166 20 14 7.0204 10.0744 6.9947 21 1 5.6311 9.6712 7.3301 22 1 7.6235 10.7836 8.1517 23 1 7.0028 10.9774 5.8158 24 7 6.5564 5.3698 3.9997 25 6 3.9632 2.6704 -0.7498 26 6 3.3593 1.2629 -0.7213 27 1 3.2151 0.9083 -1.7419 28 6 4.3053 0.3162 0.0200 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.2580 1.7796 1.9630 33 1 2.9007 1.0927 1.9508 34 1 2.0851 3.8820 1.0131 35 1 3.0475 3.4836 2.4596 36 1 4.4166 4.2181 2.9010 37 1 7.8242 4.4530 1.1652 38 1 9.5512 5.6787 2.7149 39 1 8.4925 5.8439 6.1027 40 1 9.4983 6.8030 4.9905 41 1 9.3566 8.8468 8.0510 42 1 4.9666 2.6291 -1.1736 43 1 3.3356 3.3253 -1.3544 44 1 4.4477 0.6708 1.0408 45 1 3.8751 -0.6852 0.0400 46 1 5.2668 0.2884 -0.4925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365767362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:00 Heat of formation + Delta-G solvation = -1.666716 kcal Electronic energy + Delta-G solvation = -27394.354242 eV Core-core repulsion = 23513.773036 eV Total energy + Delta-G solvation = -3880.581206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32824 -41.44288 -39.79481 -37.51267 -36.29049 -35.36269 -34.09957 -32.54705 -32.34493 -30.92312 -28.70414 -27.94752 -27.65480 -25.74934 -24.86190 -23.97923 -22.84387 -22.00315 -20.94479 -19.86532 -19.28171 -18.67202 -18.10898 -17.42615 -17.21369 -16.93885 -16.67941 -16.17528 -16.06348 -15.87065 -15.60512 -15.29888 -15.17070 -14.54008 -14.42226 -14.22969 -13.99121 -13.79918 -13.76018 -13.60317 -13.37265 -12.93866 -12.75802 -12.69599 -12.66981 -12.27893 -12.22010 -12.11297 -12.04413 -11.72323 -11.61445 -11.39323 -11.35677 -11.04303 -10.71173 -10.41387 -9.86857 -9.67042 -9.02945 -8.31663 -6.45982 1.07673 1.11463 1.38913 1.40924 1.49763 1.69319 2.02931 2.35966 2.38393 2.80018 2.84955 2.99770 3.66029 3.68685 3.95221 3.97180 4.03214 4.21024 4.26805 4.33877 4.43639 4.48695 4.57235 4.63104 4.65843 4.70593 4.81059 4.81963 4.90827 4.91447 4.93925 4.95462 5.02277 5.06483 5.12164 5.17967 5.20889 5.40202 5.56591 5.57675 5.71315 5.85073 5.97008 6.29951 6.32550 6.58932 6.67897 7.11085 7.23733 7.38378 8.75591 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.002447 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.806844 B =11442.065387 C =12175.839334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.097 3.903 4 H 0.084 0.916 5 C -0.155 4.155 6 C 0.107 3.893 7 N -0.615 5.615 8 C 0.714 3.286 9 O -0.597 6.597 10 N -0.639 5.639 11 C 0.284 3.716 12 C -0.293 4.293 13 C 0.057 3.943 14 N -0.345 5.345 15 C 0.273 3.727 16 C -0.547 4.547 17 H 0.053 0.947 18 C 0.017 3.983 19 N -0.921 5.921 20 Si 0.972 3.028 21 H -0.273 1.273 22 H -0.274 1.274 23 H -0.270 1.270 24 N -0.348 5.348 25 C 0.134 3.866 26 C -0.097 4.097 27 H 0.103 0.897 28 C -0.135 4.135 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.416 0.584 37 H 0.166 0.834 38 H 0.201 0.799 39 H 0.021 0.979 40 H 0.058 0.942 41 H 0.272 0.728 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.978 -14.200 -16.904 28.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.039 3.961 4 H 0.102 0.898 5 C -0.193 4.193 6 C -0.015 4.015 7 N -0.352 5.352 8 C 0.415 3.585 9 O -0.475 6.475 10 N -0.293 5.293 11 C 0.029 3.971 12 C -0.324 4.324 13 C -0.092 4.092 14 N -0.127 5.127 15 C 0.154 3.846 16 C -0.585 4.585 17 H 0.071 0.929 18 C -0.183 4.183 19 N -0.560 5.560 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.195 1.195 24 N -0.179 5.179 25 C 0.012 3.988 26 C -0.116 4.116 27 H 0.121 0.879 28 C -0.193 4.193 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.256 0.744 37 H 0.183 0.817 38 H 0.218 0.782 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.558 -13.989 -16.048 27.596 hybrid contribution -0.253 0.613 0.288 0.723 sum -17.811 -13.376 -15.760 27.286 Atomic orbital electron populations 1.22952 0.79863 1.03505 1.00873 1.87916 1.20998 1.28131 1.95119 1.22104 0.94229 0.84855 0.94903 0.89797 1.22431 1.02523 0.95943 0.98408 1.21888 0.85932 0.98028 0.95697 1.47278 1.07065 1.65250 1.15638 1.15673 0.84406 0.78222 0.80157 1.90821 1.32698 1.63189 1.60817 1.41623 1.10864 1.59288 1.17509 1.19096 0.88164 0.97150 0.92712 1.21667 0.91652 1.14705 1.04353 1.23146 1.00887 0.98568 0.86561 1.48821 1.05587 1.43249 1.15028 1.19329 0.93496 0.90615 0.81137 1.21367 1.12250 1.08532 1.16368 0.92911 1.25756 0.96315 1.01189 0.95036 1.69990 1.25730 1.39876 1.20357 0.85397 0.78623 0.78377 0.78009 1.19772 1.19841 1.19470 1.77237 0.99024 1.22731 1.18912 1.21714 1.03061 0.93602 0.80464 1.21584 0.93996 0.94917 1.01134 0.87905 1.21671 0.98530 0.99372 0.99694 0.89180 0.93252 0.92884 0.88601 0.91901 0.88096 0.89939 0.74389 0.81663 0.78222 0.96143 0.92380 0.91849 0.89691 0.88661 0.94197 0.92241 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.40 -5.83 9.74 -148.98 -1.45 -7.28 16 3 C 0.10 1.16 2.25 30.62 0.07 1.23 16 4 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 5 C -0.15 -1.92 5.35 30.67 0.16 -1.75 16 6 C 0.11 1.43 6.39 86.36 0.55 1.98 16 7 N -0.62 -12.30 2.41 -836.88 -2.02 -14.32 16 8 C 0.71 21.21 8.26 179.06 1.48 22.69 16 9 O -0.60 -21.62 12.91 -4.00 -0.05 -21.67 16 10 N -0.64 -20.36 5.36 -321.24 -1.72 -22.08 16 11 C 0.28 11.71 8.11 133.31 1.08 12.79 16 12 C -0.29 -11.85 9.61 22.11 0.21 -11.64 16 13 C 0.06 2.30 11.44 83.52 0.96 3.26 16 14 N -0.34 -16.51 3.67 -351.84 -1.29 -17.80 16 15 C 0.27 14.34 6.26 85.63 0.54 14.88 16 16 C -0.55 -31.05 9.23 25.60 0.24 -30.81 16 17 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 18 C 0.02 0.96 5.46 84.66 0.46 1.43 16 19 N -0.92 -52.46 13.29 21.45 0.28 -52.17 16 20 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 N -0.35 -16.49 12.42 -54.43 -0.68 -17.17 16 25 C 0.13 2.18 5.84 86.36 0.50 2.68 16 26 C -0.10 -1.38 2.94 -10.72 -0.03 -1.41 16 27 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 28 C -0.14 -2.57 8.57 71.98 0.62 -1.96 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.33 7.84 -2.39 -0.02 0.32 16 31 H 0.05 0.32 8.08 -2.39 -0.02 0.30 16 32 H 0.10 0.86 7.84 -2.39 -0.02 0.84 16 33 H 0.06 1.06 6.33 -2.38 -0.02 1.05 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.13 5.65 -2.39 -0.01 1.11 16 36 H 0.42 10.91 6.31 -92.71 -0.59 10.33 16 37 H 0.17 6.55 5.93 -2.91 -0.02 6.53 16 38 H 0.20 6.41 8.06 -2.91 -0.02 6.39 16 39 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 2.98 8.07 -2.39 -0.02 2.96 16 41 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.08 1.76 6.99 -2.39 -0.02 1.74 16 43 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 0.89 5.97 -2.39 -0.01 0.88 16 45 H 0.06 1.13 7.73 -2.38 -0.02 1.11 16 46 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -72.20 368.73 3.58 -68.62 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.41 Total: 23.43 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 8.06 Total: 14.79 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -5.42 Total: -123.53 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -1.50 Total: -28.95 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.20 3.58 -68.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.952 kcal (2) G-P(sol) polarization free energy of solvation -72.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds