Wall clock time and date at job start Tue Mar 31 2020 14:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42896 * 114.00155 * 2 1 4 4 H 1.08995 * 109.46002 * 29.97349 * 3 2 1 5 5 C 1.53038 * 109.46106 * 269.99751 * 3 2 1 6 6 C 1.53196 * 109.31621 * 178.62431 * 5 3 2 7 7 N 1.46928 * 108.77077 * 54.64090 * 6 5 3 8 8 C 1.34775 * 120.63411 * 126.37497 * 7 6 5 9 9 O 1.21591 * 120.00231 * 174.99001 * 8 7 6 10 10 N 1.34773 * 119.99409 * 354.97936 * 8 7 6 11 11 C 1.40201 * 119.99633 * 185.21155 * 10 8 7 12 12 C 1.40400 * 125.97211 * 359.71441 * 11 10 8 13 13 C 1.35245 * 107.86626 * 179.83013 * 12 11 10 14 14 N 1.34964 * 107.85839 * 0.42784 * 13 12 11 15 15 C 1.46497 * 125.97533 * 179.70461 * 14 13 12 16 16 C 1.50697 * 109.47045 * 125.00636 * 15 14 13 17 17 H 1.07995 * 120.00067 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00106 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99976 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99968 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47183 * 59.99570 * 20 18 16 22 22 H 1.48497 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46848 * 299.99705 * 20 18 16 24 24 N 1.31205 * 125.97328 * 180.02562 * 11 10 8 25 25 C 1.46931 * 118.73755 * 306.38613 * 7 6 5 26 26 C 1.53072 * 109.44280 * 149.79317 * 3 2 1 27 27 H 1.08993 * 109.62611 * 301.25237 * 26 3 2 28 28 C 1.53004 * 109.39107 * 61.36143 * 26 3 2 29 29 H 1.09003 * 109.47294 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47571 * 299.99938 * 1 2 3 31 31 H 1.08999 * 109.47325 * 60.00164 * 1 2 3 32 32 H 1.09004 * 109.49542 * 58.67496 * 5 3 2 33 33 H 1.09002 * 109.49998 * 298.57959 * 5 3 2 34 34 H 1.08996 * 109.58773 * 294.85028 * 6 5 3 35 35 H 1.08996 * 109.58571 * 174.42106 * 6 5 3 36 36 H 0.97000 * 120.00552 * 5.21161 * 10 8 7 37 37 H 1.08002 * 126.06903 * 0.02562 * 12 11 10 38 38 H 1.08000 * 126.07332 * 180.14516 * 13 12 11 39 39 H 1.09004 * 109.47577 * 245.00499 * 15 14 13 40 40 H 1.08999 * 109.47599 * 5.00591 * 15 14 13 41 41 H 0.96993 * 120.00226 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.58761 * 173.39664 * 25 7 6 43 43 H 1.08997 * 109.58767 * 293.68898 * 25 7 6 44 44 H 1.08995 * 109.47410 * 179.74975 * 28 26 3 45 45 H 1.08999 * 109.47045 * 299.75084 * 28 26 3 46 46 H 1.09009 * 109.47058 * 59.74983 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3446 1.9992 0.5134 5 6 2.2176 1.7712 -1.4429 6 6 2.8089 3.1844 -1.4392 7 7 4.0312 3.1834 -0.6239 8 6 5.1933 3.6440 -1.1279 9 8 6.1758 3.7229 -0.4160 10 7 5.2661 4.0167 -2.4210 11 6 6.4987 4.3919 -2.9739 12 6 7.7284 4.4306 -2.2975 13 6 8.6724 4.8383 -3.1760 14 7 8.0666 5.0598 -4.3615 15 6 8.7202 5.5197 -5.5893 16 6 8.4269 4.5524 -6.7070 17 1 7.8152 3.6819 -6.5213 18 6 8.9403 4.7781 -7.9666 19 7 9.6856 5.8378 -8.1927 20 14 8.5761 3.5794 -9.3523 21 1 7.1091 3.5061 -9.5706 22 1 9.2387 4.0454 -10.5968 23 1 9.0906 2.2341 -8.9909 24 7 6.7036 4.7737 -4.2123 25 6 3.9627 2.6704 0.7512 26 6 3.3570 1.2635 0.7262 27 1 3.2114 0.9119 1.7476 28 6 4.3026 0.3135 -0.0116 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.2602 1.7788 -1.9640 33 1 2.9027 1.0915 -1.9497 34 1 2.0867 3.8815 -1.0143 35 1 3.0505 3.4821 -2.4595 36 1 4.4659 4.0255 -2.9691 37 1 7.8921 4.1766 -1.2607 38 1 9.7236 4.9683 -2.9650 39 1 8.3418 6.5069 -5.8546 40 1 9.7970 5.5742 -5.4293 41 1 10.0465 5.9968 -9.0789 42 1 4.9656 2.6289 1.1762 43 1 3.3366 3.3270 1.3554 44 1 5.2636 0.2860 0.5019 45 1 3.8713 -0.6874 -0.0292 46 1 4.4465 0.6651 -1.0333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365767363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:05 Heat of formation + Delta-G solvation = 18.971296 kcal Electronic energy + Delta-G solvation = -27482.102078 eV Core-core repulsion = 23602.415803 eV Total energy + Delta-G solvation = -3879.686274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.04090 -40.17047 -38.89019 -36.72379 -34.86309 -33.61304 -32.96283 -31.64536 -30.79111 -29.26173 -27.36519 -27.26510 -26.45098 -24.89133 -23.38425 -22.97321 -21.55450 -20.47154 -19.65014 -18.97846 -18.21088 -16.81365 -16.65687 -16.53723 -16.07656 -15.91838 -15.49803 -15.41381 -14.73699 -14.67794 -14.31271 -14.19394 -13.79891 -13.71781 -13.25913 -13.05369 -12.86726 -12.72826 -12.32428 -12.21703 -12.03443 -11.92362 -11.73174 -11.57992 -11.45826 -11.06804 -11.02526 -10.84471 -10.73181 -10.42958 -10.23721 -10.05613 -9.87740 -9.62789 -9.48456 -8.88860 -8.61175 -8.07404 -7.38492 -6.22555 -4.27570 2.31481 2.67306 3.09994 3.26531 3.29672 3.33311 3.35563 3.41303 3.85709 4.05710 4.30508 4.33224 4.36647 4.60641 4.63728 4.84870 4.90801 4.94008 5.00513 5.10306 5.12415 5.17163 5.30343 5.36777 5.39214 5.48045 5.55502 5.60549 5.74554 5.82890 5.86224 5.93515 6.11910 6.24924 6.35829 6.56768 6.63898 6.82131 6.85061 6.98766 7.10695 7.51481 7.70792 7.81100 7.95849 8.09253 8.57673 8.68532 8.82575 9.37824 10.86092 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.002662 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.170621 B =10516.800082 C =11529.192493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.096 3.904 4 H 0.062 0.938 5 C -0.161 4.161 6 C 0.112 3.888 7 N -0.626 5.626 8 C 0.719 3.281 9 O -0.564 6.564 10 N -0.644 5.644 11 C 0.275 3.725 12 C -0.286 4.286 13 C 0.051 3.949 14 N -0.321 5.321 15 C 0.259 3.741 16 C -0.528 4.528 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 N -0.308 5.308 25 C 0.137 3.863 26 C -0.103 4.103 27 H 0.089 0.911 28 C -0.141 4.141 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.405 0.595 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.268 0.732 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.429 -7.840 18.168 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C 0.038 3.962 4 H 0.080 0.920 5 C -0.199 4.199 6 C -0.011 4.011 7 N -0.365 5.365 8 C 0.420 3.580 9 O -0.439 6.439 10 N -0.297 5.297 11 C 0.021 3.979 12 C -0.317 4.317 13 C -0.099 4.099 14 N -0.102 5.102 15 C 0.142 3.858 16 C -0.567 4.567 17 H 0.086 0.914 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 N -0.140 5.140 25 C 0.014 3.986 26 C -0.122 4.122 27 H 0.107 0.893 28 C -0.198 4.198 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.242 0.758 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.952 -7.586 17.291 25.375 hybrid contribution -0.536 -0.494 -0.523 0.897 sum -17.488 -8.080 16.767 25.539 Atomic orbital electron populations 1.22788 0.81290 1.02719 0.99868 1.87945 1.19362 1.27608 1.95006 1.22098 0.94474 0.84574 0.95068 0.92013 1.22487 1.02280 0.97077 0.98081 1.21624 0.86777 0.96878 0.95869 1.47186 1.07628 1.66795 1.14885 1.15483 0.83166 0.78171 0.81201 1.90856 1.34684 1.60012 1.58383 1.41598 1.08558 1.69314 1.10182 1.18796 0.85654 1.01403 0.92009 1.21494 0.90121 1.17742 1.02382 1.22549 0.99401 1.01609 0.86325 1.49046 1.03252 1.47779 1.10171 1.19721 0.92161 0.96267 0.77690 1.21222 1.32712 1.09197 0.93526 0.91379 1.24944 0.94670 0.95805 0.98662 1.69905 1.33636 1.26812 1.23045 0.86389 0.78747 0.80891 0.80479 1.19963 1.21059 1.20040 1.77311 0.96675 1.25415 1.14556 1.21526 1.03325 0.92389 0.81378 1.21641 0.93993 0.96170 1.00408 0.89327 1.21752 0.98409 0.99018 1.00671 0.89716 0.94117 0.94071 0.90481 0.89771 0.90856 0.89892 0.75790 0.82242 0.81541 0.93779 0.92557 0.92290 0.87883 0.91490 0.92556 0.92013 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.27 9.73 -35.23 -0.34 -3.61 16 3 C 0.10 0.72 2.25 -26.67 -0.06 0.66 16 4 H 0.06 0.38 7.78 -51.93 -0.40 -0.03 16 5 C -0.16 -1.21 5.35 -26.61 -0.14 -1.36 16 6 C 0.11 0.89 6.43 -3.71 -0.02 0.86 16 7 N -0.63 -6.74 2.42 -178.49 -0.43 -7.17 16 8 C 0.72 10.87 8.26 -86.92 -0.72 10.16 16 9 O -0.56 -10.22 12.93 5.29 0.07 -10.16 16 10 N -0.64 -10.38 5.36 -15.51 -0.08 -10.46 16 11 C 0.28 5.64 8.11 -154.36 -1.25 4.39 16 12 C -0.29 -5.81 9.61 -39.83 -0.38 -6.19 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 14 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 15 C 0.26 6.64 6.26 -5.20 -0.03 6.61 16 16 C -0.53 -14.78 9.24 -34.44 -0.32 -15.09 16 17 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.90 -25.44 13.29 55.43 0.74 -24.70 16 20 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 N -0.31 -7.19 12.42 31.44 0.39 -6.80 16 25 C 0.14 1.24 5.81 -3.70 -0.02 1.22 16 26 C -0.10 -0.84 2.95 -90.48 -0.27 -1.10 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 C -0.14 -1.41 8.57 37.16 0.32 -1.09 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 31 H 0.04 0.21 7.85 -51.93 -0.41 -0.20 16 32 H 0.08 0.48 7.85 -51.93 -0.41 0.07 16 33 H 0.08 0.79 6.34 -51.93 -0.33 0.46 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.64 5.57 -51.93 -0.29 0.36 16 36 H 0.40 5.43 6.28 -40.82 -0.26 5.17 16 37 H 0.16 3.17 5.93 -52.49 -0.31 2.86 16 38 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 39 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 42 H 0.10 1.10 7.03 -51.93 -0.37 0.74 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.62 7.72 -51.93 -0.40 0.22 16 46 H 0.06 0.68 5.97 -51.92 -0.31 0.37 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -33.15 368.73 -8.28 -41.43 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.82 Total: 4.49 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.10 Total: 2.78 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.38 Total: -56.91 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.27 Total: -13.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.15 -8.28 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.405 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds