Wall clock time and date at job start Tue Mar 31 2020 14:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99882 * 2 1 4 4 H 1.09007 * 109.46023 * 329.96639 * 3 2 1 5 5 C 1.53038 * 109.46579 * 89.93295 * 3 2 1 6 6 C 1.52760 * 109.38455 * 181.25966 * 5 3 2 7 7 N 1.46926 * 109.01074 * 305.58679 * 6 5 3 8 8 C 1.34778 * 120.62804 * 233.58979 * 7 6 5 9 9 O 1.21588 * 120.00019 * 4.93987 * 8 7 6 10 10 N 1.34777 * 119.99499 * 184.94463 * 8 7 6 11 11 C 1.40200 * 119.99925 * 174.86602 * 10 8 7 12 12 C 1.40399 * 125.96806 * 359.97438 * 11 10 8 13 13 C 1.35247 * 107.86557 * 180.28042 * 12 11 10 14 14 N 1.34968 * 107.85530 * 359.57880 * 13 12 11 15 15 C 1.46500 * 125.97322 * 180.15927 * 14 13 12 16 16 C 1.50698 * 109.47250 * 125.28588 * 15 14 13 17 17 H 1.08004 * 119.99861 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00268 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99783 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00086 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47154 * 59.99915 * 20 18 16 22 22 H 1.48502 * 109.47304 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47127 * 300.00170 * 20 18 16 24 24 N 1.31202 * 125.97228 * 180.02562 * 11 10 8 25 25 C 1.46923 * 118.73763 * 53.30660 * 7 6 5 26 26 C 1.53043 * 109.45999 * 210.00118 * 3 2 1 27 27 H 1.09007 * 109.49351 * 298.56521 * 26 3 2 28 28 C 1.53003 * 109.49834 * 58.65798 * 26 3 2 29 29 H 1.09000 * 109.47347 * 60.00401 * 1 2 3 30 30 H 1.09004 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47258 * 300.00554 * 1 2 3 32 32 H 1.09004 * 109.49198 * 301.33335 * 5 3 2 33 33 H 1.08998 * 109.50087 * 61.39615 * 5 3 2 34 34 H 1.09006 * 109.51128 * 185.70044 * 6 5 3 35 35 H 1.08998 * 109.43439 * 65.42499 * 6 5 3 36 36 H 0.97002 * 120.00106 * 354.86893 * 10 8 7 37 37 H 1.08003 * 126.07090 * 0.02632 * 12 11 10 38 38 H 1.08002 * 126.06882 * 179.69469 * 13 12 11 39 39 H 1.09003 * 109.47186 * 245.28562 * 15 14 13 40 40 H 1.08999 * 109.47575 * 5.28388 * 15 14 13 41 41 H 0.97002 * 119.99932 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.58841 * 66.43393 * 25 7 6 43 43 H 1.09000 * 109.58520 * 186.85905 * 25 7 6 44 44 H 1.09000 * 109.47099 * 179.84577 * 28 26 3 45 45 H 1.09001 * 109.46957 * 299.84126 * 28 26 3 46 46 H 1.09000 * 109.46750 * 59.84258 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9991 -0.5144 5 6 2.2160 1.7720 1.4429 6 6 2.8083 3.1801 1.4408 7 7 4.0301 3.1843 0.6248 8 6 5.1915 3.6452 1.1299 9 8 5.2569 3.9789 2.2973 10 7 6.2804 3.7364 0.3409 11 6 7.4577 4.3154 0.8350 12 6 7.6409 4.8387 2.1249 13 6 8.9068 5.3077 2.2065 14 7 9.5085 5.0834 1.0194 15 6 10.8888 5.4328 0.6747 16 6 11.6098 4.2048 0.1815 17 1 11.0917 3.2585 0.1305 18 6 12.9307 4.2892 -0.2045 19 7 13.5614 5.4416 -0.1428 20 14 13.8245 2.7668 -0.8150 21 1 13.1328 2.2353 -2.0169 22 1 15.2233 3.1212 -1.1658 23 1 13.8277 1.7335 0.2516 24 7 8.5805 4.4639 0.1727 25 6 3.9631 2.6705 -0.7500 26 6 3.3592 1.2629 -0.7215 27 1 4.0331 0.5884 -0.1933 28 6 3.1567 0.7651 -2.1540 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 1.2580 1.7797 1.9629 33 1 2.9003 1.0925 1.9509 34 1 3.0498 3.4750 2.4621 35 1 2.0846 3.8773 1.0186 36 1 6.2495 3.4014 -0.5690 37 1 6.9009 4.8659 2.9111 38 1 9.3568 5.7767 3.0691 39 1 10.8869 6.1917 -0.1078 40 1 11.3964 5.8222 1.5572 41 1 14.4908 5.5009 -0.4140 42 1 3.3355 3.3252 -1.3546 43 1 4.9665 2.6291 -1.1739 44 1 4.1173 0.7376 -2.6684 45 1 2.7269 -0.2365 -2.1333 46 1 2.4815 1.4393 -2.6810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365767364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:08 Heat of formation + Delta-G solvation = 15.011089 kcal Electronic energy + Delta-G solvation = -27221.367047 eV Core-core repulsion = 23341.509045 eV Total energy + Delta-G solvation = -3879.858002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99088 -40.12899 -38.91121 -36.68425 -34.87274 -33.46434 -33.36743 -32.03648 -30.63453 -29.25375 -27.47605 -26.94924 -26.61922 -24.90597 -23.26308 -22.53230 -21.38722 -20.67834 -20.14138 -19.23284 -18.10580 -16.98469 -16.68914 -16.54302 -15.91961 -15.80314 -15.76727 -15.23264 -14.76206 -14.67032 -14.24610 -14.18502 -13.80659 -13.70161 -13.38840 -13.00245 -12.74351 -12.61386 -12.52267 -12.25769 -12.17311 -12.13459 -11.77725 -11.57254 -11.35454 -11.32624 -11.04227 -10.85271 -10.82013 -10.42462 -10.23511 -10.05748 -9.87314 -9.64544 -9.47613 -8.91657 -8.60818 -8.07712 -7.38789 -6.22248 -4.27192 2.30183 2.66430 3.09041 3.27055 3.30095 3.32296 3.34163 3.40848 3.84925 4.05412 4.24658 4.34763 4.38107 4.52136 4.69787 4.86596 4.91689 4.92902 4.97366 5.02903 5.12709 5.16667 5.21400 5.28324 5.33800 5.46664 5.47632 5.61643 5.65090 5.78347 5.83550 5.86230 5.96268 6.14517 6.34613 6.56474 6.63098 6.81398 6.84448 6.98447 7.10574 7.50950 7.70977 7.80767 7.95636 8.09254 8.56488 8.68424 8.82814 9.38204 10.86380 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.002525 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.401098 B =11085.056098 C =12142.794969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.096 3.904 4 H 0.063 0.937 5 C -0.158 4.158 6 C 0.134 3.866 7 N -0.629 5.629 8 C 0.718 3.282 9 O -0.565 6.565 10 N -0.644 5.644 11 C 0.275 3.725 12 C -0.286 4.286 13 C 0.051 3.949 14 N -0.320 5.320 15 C 0.259 3.741 16 C -0.528 4.528 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 N -0.308 5.308 25 C 0.116 3.884 26 C -0.104 4.104 27 H 0.086 0.914 28 C -0.144 4.144 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.405 0.595 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.267 0.733 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.400 -6.562 -0.937 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.038 3.962 4 H 0.081 0.919 5 C -0.197 4.197 6 C 0.011 3.989 7 N -0.367 5.367 8 C 0.419 3.581 9 O -0.440 6.440 10 N -0.296 5.296 11 C 0.021 3.979 12 C -0.318 4.318 13 C -0.099 4.099 14 N -0.102 5.102 15 C 0.142 3.858 16 C -0.566 4.566 17 H 0.086 0.914 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 N -0.139 5.139 25 C -0.008 4.008 26 C -0.124 4.124 27 H 0.104 0.896 28 C -0.202 4.202 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.242 0.758 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.327 -6.515 -1.251 26.181 hybrid contribution -0.030 -0.644 -0.111 0.654 sum -25.356 -7.160 -1.362 26.383 Atomic orbital electron populations 1.22782 0.81211 1.02706 0.99889 1.87927 1.19452 1.27617 1.94984 1.22128 0.94353 0.84626 0.95085 0.91925 1.22399 1.02103 0.97601 0.97569 1.21330 0.84306 0.95749 0.97533 1.47231 1.08306 1.66809 1.14393 1.15495 0.79552 0.78612 0.84409 1.90856 1.83090 1.55144 1.14900 1.41589 1.08925 1.62633 1.16418 1.18796 0.86469 0.99344 0.93293 1.21494 0.98120 1.13780 0.98361 1.22550 0.93725 1.02022 0.91580 1.49051 1.11489 1.42145 1.07549 1.19724 0.70570 0.97497 0.98052 1.21220 0.95952 0.95036 1.44419 0.91373 1.24944 0.97110 0.96804 0.95242 1.69910 1.11726 1.24249 1.47514 0.86387 0.78265 0.82401 0.79436 1.19954 1.21061 1.20046 1.77314 0.97263 1.21531 1.17782 1.21755 1.02021 0.93890 0.83136 1.21605 0.96197 0.97000 0.97559 0.89585 1.21724 1.02089 1.01991 0.94352 0.94086 0.89706 0.94078 0.90423 0.90339 0.88065 0.91559 0.75753 0.82258 0.81526 0.93780 0.92551 0.92298 0.90715 0.89651 0.92055 0.91369 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.25 9.62 -35.23 -0.34 -3.59 16 3 C 0.10 0.72 2.02 -26.69 -0.05 0.67 16 4 H 0.06 0.40 7.79 -51.93 -0.40 -0.01 16 5 C -0.16 -1.25 5.68 -26.83 -0.15 -1.40 16 6 C 0.13 1.21 6.41 -3.93 -0.03 1.19 16 7 N -0.63 -6.93 2.98 -178.77 -0.53 -7.46 16 8 C 0.72 11.05 8.26 -86.92 -0.72 10.33 16 9 O -0.56 -10.38 12.91 5.29 0.07 -10.32 16 10 N -0.64 -10.46 5.36 -15.51 -0.08 -10.55 16 11 C 0.27 5.66 8.11 -154.36 -1.25 4.41 16 12 C -0.29 -5.83 9.61 -39.83 -0.38 -6.21 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 14 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 15 C 0.26 6.64 6.26 -5.19 -0.03 6.61 16 16 C -0.53 -14.79 9.24 -34.44 -0.32 -15.11 16 17 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 20 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 N -0.31 -7.18 12.42 31.44 0.39 -6.79 16 25 C 0.12 0.95 5.68 -3.71 -0.02 0.93 16 26 C -0.10 -0.83 2.62 -90.50 -0.24 -1.06 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 28 C -0.14 -0.97 9.04 37.16 0.34 -0.63 16 29 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.20 7.84 -51.92 -0.41 -0.21 16 32 H 0.08 0.50 7.84 -51.93 -0.41 0.09 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.08 6.99 -51.93 -0.36 0.71 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.41 5.48 6.31 -40.82 -0.26 5.22 16 37 H 0.16 3.18 5.93 -52.48 -0.31 2.87 16 38 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 39 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.69 5.64 -51.93 -0.29 0.40 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.51 7.65 -51.93 -0.40 0.11 16 46 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -33.29 373.21 -8.47 -41.76 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.03 Total: 3.90 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.06 Total: 3.44 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.28 Total: -57.29 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.27 Total: -13.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.29 -8.47 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.776 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds