Wall clock time and date at job start Tue Mar 31 2020 14:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99882 * 2 1 4 4 H 1.09007 * 109.46023 * 329.96639 * 3 2 1 5 5 C 1.53038 * 109.46579 * 89.93295 * 3 2 1 6 6 C 1.52760 * 109.38455 * 181.25966 * 5 3 2 7 7 N 1.46926 * 109.01074 * 305.58679 * 6 5 3 8 8 C 1.34778 * 120.62804 * 233.58979 * 7 6 5 9 9 O 1.21588 * 120.00019 * 4.93987 * 8 7 6 10 10 N 1.34777 * 119.99499 * 184.94463 * 8 7 6 11 11 C 1.40200 * 119.99925 * 174.86602 * 10 8 7 12 12 C 1.40399 * 125.96806 * 359.97438 * 11 10 8 13 13 C 1.35247 * 107.86557 * 180.28042 * 12 11 10 14 14 N 1.34968 * 107.85530 * 359.57880 * 13 12 11 15 15 C 1.46500 * 125.97322 * 180.15927 * 14 13 12 16 16 C 1.50698 * 109.47250 * 125.28588 * 15 14 13 17 17 H 1.08004 * 119.99861 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00268 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99783 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00086 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47154 * 59.99915 * 20 18 16 22 22 H 1.48502 * 109.47304 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47127 * 300.00170 * 20 18 16 24 24 N 1.31202 * 125.97228 * 180.02562 * 11 10 8 25 25 C 1.46923 * 118.73763 * 53.30660 * 7 6 5 26 26 C 1.53043 * 109.45999 * 210.00118 * 3 2 1 27 27 H 1.09007 * 109.49351 * 298.56521 * 26 3 2 28 28 C 1.53003 * 109.49834 * 58.65798 * 26 3 2 29 29 H 1.09000 * 109.47347 * 60.00401 * 1 2 3 30 30 H 1.09004 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47258 * 300.00554 * 1 2 3 32 32 H 1.09004 * 109.49198 * 301.33335 * 5 3 2 33 33 H 1.08998 * 109.50087 * 61.39615 * 5 3 2 34 34 H 1.09006 * 109.51128 * 185.70044 * 6 5 3 35 35 H 1.08998 * 109.43439 * 65.42499 * 6 5 3 36 36 H 0.97002 * 120.00106 * 354.86893 * 10 8 7 37 37 H 1.08003 * 126.07090 * 0.02632 * 12 11 10 38 38 H 1.08002 * 126.06882 * 179.69469 * 13 12 11 39 39 H 1.09003 * 109.47186 * 245.28562 * 15 14 13 40 40 H 1.08999 * 109.47575 * 5.28388 * 15 14 13 41 41 H 0.97002 * 119.99932 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.58841 * 66.43393 * 25 7 6 43 43 H 1.09000 * 109.58520 * 186.85905 * 25 7 6 44 44 H 1.09000 * 109.47099 * 179.84577 * 28 26 3 45 45 H 1.09001 * 109.46957 * 299.84126 * 28 26 3 46 46 H 1.09000 * 109.46750 * 59.84258 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9991 -0.5144 5 6 2.2160 1.7720 1.4429 6 6 2.8083 3.1801 1.4408 7 7 4.0301 3.1843 0.6248 8 6 5.1915 3.6452 1.1299 9 8 5.2569 3.9789 2.2973 10 7 6.2804 3.7364 0.3409 11 6 7.4577 4.3154 0.8350 12 6 7.6409 4.8387 2.1249 13 6 8.9068 5.3077 2.2065 14 7 9.5085 5.0834 1.0194 15 6 10.8888 5.4328 0.6747 16 6 11.6098 4.2048 0.1815 17 1 11.0917 3.2585 0.1305 18 6 12.9307 4.2892 -0.2045 19 7 13.5614 5.4416 -0.1428 20 14 13.8245 2.7668 -0.8150 21 1 13.1328 2.2353 -2.0169 22 1 15.2233 3.1212 -1.1658 23 1 13.8277 1.7335 0.2516 24 7 8.5805 4.4639 0.1727 25 6 3.9631 2.6705 -0.7500 26 6 3.3592 1.2629 -0.7215 27 1 4.0331 0.5884 -0.1933 28 6 3.1567 0.7651 -2.1540 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 1.2580 1.7797 1.9629 33 1 2.9003 1.0925 1.9509 34 1 3.0498 3.4750 2.4621 35 1 2.0846 3.8773 1.0186 36 1 6.2495 3.4014 -0.5690 37 1 6.9009 4.8659 2.9111 38 1 9.3568 5.7767 3.0691 39 1 10.8869 6.1917 -0.1078 40 1 11.3964 5.8222 1.5572 41 1 14.4908 5.5009 -0.4140 42 1 3.3355 3.3252 -1.3546 43 1 4.9665 2.6291 -1.1739 44 1 4.1173 0.7376 -2.6684 45 1 2.7269 -0.2365 -2.1333 46 1 2.4815 1.4393 -2.6810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365767364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:07 Heat of formation + Delta-G solvation = -5.833870 kcal Electronic energy + Delta-G solvation = -27222.270952 eV Core-core repulsion = 23341.509045 eV Total energy + Delta-G solvation = -3880.761907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32613 -41.39242 -39.79733 -37.49028 -36.32511 -35.31517 -34.19934 -33.20085 -32.13048 -30.91281 -28.60100 -27.92511 -27.56171 -25.84952 -24.85702 -23.54642 -22.58328 -21.86130 -21.39223 -20.44619 -19.22303 -18.67480 -18.12837 -17.59942 -17.23794 -16.86729 -16.53366 -16.36857 -16.09620 -15.66928 -15.63438 -15.53729 -14.77913 -14.51986 -14.39228 -14.27944 -14.13080 -13.83251 -13.65798 -13.50882 -13.25024 -13.02941 -12.91375 -12.78594 -12.70801 -12.28272 -12.17167 -12.07319 -11.96994 -11.93776 -11.63707 -11.43330 -11.40351 -11.06319 -10.71292 -10.42172 -9.90826 -9.68993 -9.04149 -8.32007 -6.46069 1.04740 1.11361 1.38567 1.40484 1.49273 1.67128 2.01058 2.35313 2.36506 2.78207 2.81224 2.99482 3.58881 3.73245 3.88174 3.96151 4.07294 4.22473 4.26118 4.30350 4.37674 4.49144 4.55625 4.58303 4.65076 4.68194 4.74844 4.85069 4.89251 4.92637 4.93722 4.95090 5.02724 5.05074 5.14466 5.16975 5.25493 5.39640 5.52367 5.56780 5.69335 5.84478 5.95793 6.29654 6.31452 6.56809 6.67165 7.09825 7.23596 7.34859 8.75234 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.002525 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.401098 B =11085.056098 C =12142.794969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.097 3.903 4 H 0.085 0.915 5 C -0.150 4.150 6 C 0.131 3.869 7 N -0.619 5.619 8 C 0.714 3.286 9 O -0.598 6.598 10 N -0.638 5.638 11 C 0.284 3.716 12 C -0.293 4.293 13 C 0.058 3.942 14 N -0.344 5.344 15 C 0.273 3.727 16 C -0.548 4.548 17 H 0.051 0.949 18 C 0.018 3.982 19 N -0.920 5.920 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.271 1.271 24 N -0.347 5.347 25 C 0.112 3.888 26 C -0.101 4.101 27 H 0.061 0.939 28 C -0.138 4.138 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.417 0.583 37 H 0.166 0.834 38 H 0.202 0.798 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.273 0.727 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.165 -7.176 -1.625 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.040 3.960 4 H 0.103 0.897 5 C -0.189 4.189 6 C 0.009 3.991 7 N -0.355 5.355 8 C 0.415 3.585 9 O -0.476 6.476 10 N -0.292 5.292 11 C 0.028 3.972 12 C -0.324 4.324 13 C -0.091 4.091 14 N -0.126 5.126 15 C 0.154 3.846 16 C -0.586 4.586 17 H 0.070 0.930 18 C -0.182 4.182 19 N -0.559 5.559 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.196 1.196 24 N -0.178 5.178 25 C -0.011 4.011 26 C -0.121 4.121 27 H 0.079 0.921 28 C -0.196 4.196 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.257 0.743 37 H 0.183 0.817 38 H 0.218 0.782 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.156 -7.152 -1.964 28.150 hybrid contribution 0.339 -0.484 0.133 0.606 sum -26.816 -7.636 -1.831 27.942 Atomic orbital electron populations 1.22957 0.79736 1.03542 1.00925 1.87906 1.21165 1.28111 1.95077 1.22135 0.94369 0.84921 0.94601 0.89712 1.22329 1.02261 0.96141 0.98178 1.21521 0.83823 0.97154 0.96604 1.47335 1.07284 1.65284 1.15630 1.15693 0.80207 0.78676 0.83945 1.90821 1.83751 1.56741 1.16322 1.41613 1.07998 1.62392 1.17197 1.19092 0.86902 0.97961 0.93239 1.21666 0.98276 1.13963 0.98528 1.23151 0.93611 1.00883 0.91455 1.48824 1.11122 1.43937 1.08759 1.19334 0.71829 0.96136 0.97267 1.21364 0.96652 0.95162 1.45391 0.93040 1.25733 0.97656 0.99748 0.95067 1.69987 1.12194 1.25886 1.47788 0.85417 0.77451 0.78830 0.78829 1.19806 1.19737 1.19591 1.77235 0.98233 1.23414 1.18932 1.22001 1.02780 0.94581 0.81703 1.21545 0.96155 0.96114 0.98274 0.92076 1.21676 1.02520 1.01897 0.93517 0.92794 0.89140 0.93216 0.88477 0.92865 0.89916 0.88618 0.74342 0.81692 0.78151 0.95996 0.92331 0.91834 0.87828 0.89735 0.91983 0.92126 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.44 16 2 O -0.40 -6.15 9.62 -148.98 -1.43 -7.58 16 3 C 0.10 1.25 2.02 30.62 0.06 1.31 16 4 H 0.08 0.74 7.79 -2.38 -0.02 0.72 16 5 C -0.15 -2.14 5.68 30.53 0.17 -1.97 16 6 C 0.13 2.15 6.41 86.22 0.55 2.70 16 7 N -0.62 -12.79 2.98 -837.75 -2.50 -15.28 16 8 C 0.71 21.62 8.26 179.05 1.48 23.10 16 9 O -0.60 -22.02 12.91 -3.99 -0.05 -22.07 16 10 N -0.64 -20.58 5.36 -321.23 -1.72 -22.30 16 11 C 0.28 11.74 8.11 133.31 1.08 12.82 16 12 C -0.29 -11.92 9.61 22.11 0.21 -11.70 16 13 C 0.06 2.33 11.44 83.52 0.96 3.28 16 14 N -0.34 -16.49 3.67 -351.84 -1.29 -17.78 16 15 C 0.27 14.33 6.26 85.63 0.54 14.87 16 16 C -0.55 -31.22 9.24 25.60 0.24 -30.98 16 17 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 18 C 0.02 1.02 5.46 84.65 0.46 1.49 16 19 N -0.92 -52.41 13.29 21.45 0.28 -52.12 16 20 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 N -0.35 -16.49 12.42 -54.44 -0.68 -17.16 16 25 C 0.11 1.61 5.68 86.36 0.49 2.10 16 26 C -0.10 -1.45 2.62 -10.71 -0.03 -1.48 16 27 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 28 C -0.14 -1.59 9.04 71.98 0.65 -0.94 16 29 H 0.05 0.33 8.08 -2.39 -0.02 0.32 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.35 7.84 -2.38 -0.02 0.33 16 32 H 0.10 1.01 7.84 -2.38 -0.02 0.99 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.71 6.99 -2.38 -0.02 1.70 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.42 11.09 6.31 -92.71 -0.59 10.50 16 37 H 0.17 6.56 5.93 -2.91 -0.02 6.55 16 38 H 0.20 6.42 8.06 -2.91 -0.02 6.39 16 39 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 41 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.24 5.64 -2.39 -0.01 1.23 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.81 7.65 -2.39 -0.02 0.79 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -72.64 373.21 3.14 -69.51 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.40 Total: 22.79 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 8.09 Total: 16.04 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -5.90 Total: -124.65 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.49 Total: -29.65 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -72.64 3.14 -69.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.676 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds