Wall clock time and date at job start Tue Mar 31 2020 14:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99750 * 2 1 4 4 H 1.09001 * 109.45320 * 29.96934 * 3 2 1 5 5 C 1.53040 * 109.45983 * 269.99837 * 3 2 1 6 6 C 1.53194 * 109.31245 * 178.61575 * 5 3 2 7 7 N 1.46928 * 108.77630 * 54.63905 * 6 5 3 8 8 C 1.34773 * 120.63208 * 126.36619 * 7 6 5 9 9 O 1.21590 * 120.00331 * 185.22579 * 8 7 6 10 10 N 1.34776 * 120.00076 * 5.23140 * 8 7 6 11 11 C 1.40194 * 120.00161 * 174.87350 * 10 8 7 12 12 C 1.40404 * 125.97196 * 0.02562 * 11 10 8 13 13 C 1.35240 * 107.86660 * 179.74297 * 12 11 10 14 14 N 1.34967 * 107.86111 * 0.37128 * 13 12 11 15 15 C 1.46499 * 125.97984 * 179.89872 * 14 13 12 16 16 C 1.50689 * 109.47454 * 124.71344 * 15 14 13 17 17 H 1.08008 * 120.00444 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00281 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00384 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99981 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47029 * 89.99931 * 20 18 16 22 22 H 1.48496 * 109.47399 * 210.00516 * 20 18 16 23 23 H 1.48503 * 109.46815 * 330.00615 * 20 18 16 24 24 N 1.31211 * 125.97334 * 179.97438 * 11 10 8 25 25 C 1.46930 * 118.73353 * 306.64242 * 7 6 5 26 26 C 1.52761 * 109.00962 * 53.31219 * 25 7 6 27 27 H 1.08997 * 109.38571 * 65.51185 * 26 25 7 28 28 C 1.52995 * 109.56370 * 185.54811 * 26 25 7 29 29 H 1.09006 * 109.46856 * 299.99818 * 1 2 3 30 30 H 1.08998 * 109.47329 * 59.99808 * 1 2 3 31 31 H 1.09004 * 109.47412 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.49452 * 58.66991 * 5 3 2 33 33 H 1.08999 * 109.53019 * 298.58545 * 5 3 2 34 34 H 1.09001 * 109.58646 * 294.85038 * 6 5 3 35 35 H 1.08997 * 109.58589 * 174.42601 * 6 5 3 36 36 H 0.97003 * 119.99778 * 354.86653 * 10 8 7 37 37 H 1.08000 * 126.06287 * 359.97438 * 12 11 10 38 38 H 1.08003 * 126.07459 * 180.26436 * 13 12 11 39 39 H 1.09002 * 109.46695 * 4.71066 * 15 14 13 40 40 H 1.08999 * 109.46854 * 244.71345 * 15 14 13 41 41 H 0.96995 * 120.00009 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.58024 * 173.14398 * 25 7 6 43 43 H 1.08998 * 109.58568 * 293.56555 * 25 7 6 44 44 H 1.09001 * 109.47209 * 179.97438 * 28 26 25 45 45 H 1.09000 * 109.47389 * 299.96586 * 28 26 25 46 46 H 1.09009 * 109.47142 * 59.96675 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3444 1.9992 0.5134 5 6 2.2175 1.7712 -1.4430 6 6 2.8085 3.1845 -1.4392 7 7 4.0308 3.1839 -0.6238 8 6 5.1927 3.6446 -1.1278 9 8 6.2165 3.5517 -0.4784 10 7 5.2199 4.2086 -2.3516 11 6 6.4045 4.7842 -2.8320 12 6 7.6294 4.8428 -2.1482 13 6 8.5218 5.4691 -2.9485 14 7 7.8885 5.8036 -4.0925 15 6 8.4852 6.5009 -5.2343 16 6 8.2850 5.6822 -6.4835 17 1 7.7655 4.7367 -6.4320 18 6 8.7658 6.1396 -7.6920 19 7 8.5906 5.4253 -8.7824 20 14 9.6649 7.7746 -7.7811 21 1 11.1179 7.5526 -7.5693 22 1 9.4471 8.3873 -9.1161 23 1 9.1445 8.6836 -6.7283 24 7 6.5626 5.3616 -3.9996 25 6 3.9635 2.6657 0.7494 26 6 3.3584 1.2633 0.7229 27 1 4.0328 0.5881 0.1962 28 6 3.1545 0.7662 2.1554 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.2601 1.7786 -1.9640 33 1 2.9025 1.0918 -1.9503 34 1 2.0861 3.8815 -1.0142 35 1 3.0501 3.4823 -2.4595 36 1 4.4199 4.2160 -2.9001 37 1 7.8252 4.4531 -1.1602 38 1 9.5569 5.6680 -2.7132 39 1 9.5519 6.6399 -5.0581 40 1 8.0074 7.4730 -5.3565 41 1 8.9285 5.7473 -9.6326 42 1 4.9671 2.6212 1.1727 43 1 3.3373 3.3195 1.3564 44 1 2.7223 -0.2343 2.1348 45 1 4.1149 0.7363 2.6699 46 1 2.4809 1.4423 2.6822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365767365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:11 Heat of formation + Delta-G solvation = 21.034464 kcal Electronic energy + Delta-G solvation = -27182.582406 eV Core-core repulsion = 23302.985597 eV Total energy + Delta-G solvation = -3879.596809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02159 -40.19070 -38.92550 -36.67167 -34.92967 -33.79960 -33.06171 -31.78149 -31.12413 -29.36732 -27.44957 -27.43899 -26.61201 -24.91503 -22.72531 -22.71102 -21.54917 -20.65021 -20.10627 -19.25118 -18.12621 -17.05941 -16.94349 -16.62293 -16.03986 -15.81090 -15.71219 -15.29002 -14.87851 -14.57602 -14.36202 -14.11487 -13.81044 -13.64820 -13.36738 -13.05339 -12.89193 -12.82758 -12.51884 -12.35480 -12.23968 -12.10804 -12.10355 -11.58332 -11.40106 -11.30845 -11.13442 -10.77230 -10.76678 -10.63265 -10.09082 -9.98914 -9.89440 -9.71083 -9.49967 -8.92584 -8.75300 -8.14894 -7.45327 -6.22211 -4.24307 2.26915 2.59548 3.03339 3.15929 3.22297 3.23591 3.31929 3.37847 3.80128 3.98998 4.24025 4.28556 4.32792 4.57595 4.63834 4.84546 4.91450 4.95432 4.98486 5.04896 5.06043 5.16591 5.26724 5.30111 5.34058 5.41087 5.47058 5.54460 5.70256 5.72067 5.75805 5.87824 5.97487 6.11201 6.27724 6.39351 6.48380 6.60656 6.74488 6.82561 6.86490 7.29043 7.44452 7.80483 7.86041 8.35521 8.53920 8.61019 8.87980 9.32868 10.90535 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.002368 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.654832 B =11823.126277 C =12600.597557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.096 3.904 4 H 0.063 0.937 5 C -0.159 4.159 6 C 0.112 3.888 7 N -0.629 5.629 8 C 0.719 3.281 9 O -0.565 6.565 10 N -0.644 5.644 11 C 0.278 3.722 12 C -0.282 4.282 13 C 0.051 3.949 14 N -0.321 5.321 15 C 0.232 3.768 16 C -0.534 4.534 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.888 5.888 20 Si 0.873 3.127 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.264 1.264 24 N -0.301 5.301 25 C 0.138 3.862 26 C -0.105 4.105 27 H 0.085 0.915 28 C -0.141 4.141 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.406 0.594 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.268 0.732 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.641 -6.407 20.771 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.038 3.962 4 H 0.081 0.919 5 C -0.197 4.197 6 C -0.012 4.012 7 N -0.367 5.367 8 C 0.420 3.580 9 O -0.440 6.440 10 N -0.296 5.296 11 C 0.024 3.976 12 C -0.313 4.313 13 C -0.098 4.098 14 N -0.102 5.102 15 C 0.113 3.887 16 C -0.572 4.572 17 H 0.103 0.897 18 C -0.128 4.128 19 N -0.526 5.526 20 Si 0.699 3.301 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.189 1.189 24 N -0.131 5.131 25 C 0.015 3.985 26 C -0.124 4.124 27 H 0.103 0.897 28 C -0.199 4.199 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.244 0.756 37 H 0.180 0.820 38 H 0.186 0.814 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.248 -6.223 19.844 25.788 hybrid contribution 0.121 0.743 -0.061 0.756 sum -15.126 -5.479 19.784 25.499 Atomic orbital electron populations 1.22788 0.81217 1.02733 0.99892 1.87934 1.19449 1.27593 1.94962 1.22131 0.94607 0.84645 0.94804 0.91930 1.22455 1.02288 0.96953 0.98022 1.21638 0.86756 0.96921 0.95883 1.47234 1.07683 1.66773 1.15010 1.15489 0.83514 0.78237 0.80782 1.90854 1.31101 1.61861 1.60178 1.41592 1.11730 1.59461 1.16790 1.18806 0.86810 0.98882 0.93114 1.21521 0.91402 1.14142 1.04269 1.22544 0.99273 1.00409 0.87599 1.48586 1.05496 1.42629 1.13536 1.20029 0.92776 0.92810 0.83038 1.21117 1.38607 1.07762 0.89684 0.89654 1.24839 0.95516 0.97155 0.95296 1.69875 1.45477 1.38074 0.99133 0.86905 0.80607 0.84195 0.78383 1.19710 1.20563 1.18864 1.77378 0.98483 1.21115 1.16148 1.21465 1.03312 0.92464 0.81269 1.21557 0.95808 0.97665 0.97403 0.89677 1.21691 1.01954 1.01812 0.94448 0.94103 0.94048 0.89691 0.90291 0.90166 0.90815 0.89801 0.75648 0.82041 0.81416 0.93346 0.94074 0.92204 0.87860 0.91443 0.91484 0.92127 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.28 9.62 -35.23 -0.34 -3.62 16 3 C 0.10 0.73 2.02 -26.69 -0.05 0.67 16 4 H 0.06 0.40 7.78 -51.93 -0.40 -0.01 16 5 C -0.16 -1.21 5.69 -26.61 -0.15 -1.36 16 6 C 0.11 0.90 6.39 -3.71 -0.02 0.87 16 7 N -0.63 -6.88 2.98 -178.76 -0.53 -7.41 16 8 C 0.72 10.95 8.26 -86.92 -0.72 10.23 16 9 O -0.56 -10.25 12.91 5.29 0.07 -10.18 16 10 N -0.64 -10.39 5.36 -15.51 -0.08 -10.47 16 11 C 0.28 5.67 8.11 -154.36 -1.25 4.41 16 12 C -0.28 -5.60 9.61 -39.83 -0.38 -5.99 16 13 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 14 N -0.32 -7.34 3.67 -62.57 -0.23 -7.57 16 15 C 0.23 5.55 5.33 -5.20 -0.03 5.52 16 16 C -0.53 -15.14 9.79 -34.45 -0.34 -15.48 16 17 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 18 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 20 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 24 N -0.30 -6.96 12.42 31.44 0.39 -6.57 16 25 C 0.14 1.27 5.70 -3.93 -0.02 1.24 16 26 C -0.10 -0.87 2.61 -90.72 -0.24 -1.11 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 C -0.14 -0.97 9.04 37.15 0.34 -0.63 16 29 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 30 H 0.04 0.21 7.85 -51.93 -0.41 -0.20 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.66 5.65 -51.93 -0.29 0.37 16 36 H 0.41 5.48 6.31 -40.82 -0.26 5.22 16 37 H 0.16 3.14 5.93 -52.49 -0.31 2.83 16 38 H 0.17 2.59 8.06 -52.48 -0.42 2.17 16 39 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 40 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.10 1.11 7.00 -51.93 -0.36 0.75 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.49 7.65 -51.93 -0.40 0.10 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -34.72 369.61 -8.12 -42.83 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.00 Total: 5.36 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.07 Total: 2.49 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.32 Total: -57.98 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.27 Total: -13.80 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.72 -8.12 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.869 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds