Wall clock time and date at job start Tue Mar 31 2020 14:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99750 * 2 1 4 4 H 1.09001 * 109.45320 * 29.96934 * 3 2 1 5 5 C 1.53040 * 109.45983 * 269.99837 * 3 2 1 6 6 C 1.53194 * 109.31245 * 178.61575 * 5 3 2 7 7 N 1.46928 * 108.77630 * 54.63905 * 6 5 3 8 8 C 1.34773 * 120.63208 * 126.36619 * 7 6 5 9 9 O 1.21590 * 120.00331 * 185.22579 * 8 7 6 10 10 N 1.34776 * 120.00076 * 5.23140 * 8 7 6 11 11 C 1.40194 * 120.00161 * 174.87350 * 10 8 7 12 12 C 1.40404 * 125.97196 * 0.02562 * 11 10 8 13 13 C 1.35240 * 107.86660 * 179.74297 * 12 11 10 14 14 N 1.34967 * 107.86111 * 0.37128 * 13 12 11 15 15 C 1.46499 * 125.97984 * 179.89872 * 14 13 12 16 16 C 1.50689 * 109.47454 * 124.71344 * 15 14 13 17 17 H 1.08008 * 120.00444 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00281 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00384 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99981 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47029 * 89.99931 * 20 18 16 22 22 H 1.48496 * 109.47399 * 210.00516 * 20 18 16 23 23 H 1.48503 * 109.46815 * 330.00615 * 20 18 16 24 24 N 1.31211 * 125.97334 * 179.97438 * 11 10 8 25 25 C 1.46930 * 118.73353 * 306.64242 * 7 6 5 26 26 C 1.52761 * 109.00962 * 53.31219 * 25 7 6 27 27 H 1.08997 * 109.38571 * 65.51185 * 26 25 7 28 28 C 1.52995 * 109.56370 * 185.54811 * 26 25 7 29 29 H 1.09006 * 109.46856 * 299.99818 * 1 2 3 30 30 H 1.08998 * 109.47329 * 59.99808 * 1 2 3 31 31 H 1.09004 * 109.47412 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.49452 * 58.66991 * 5 3 2 33 33 H 1.08999 * 109.53019 * 298.58545 * 5 3 2 34 34 H 1.09001 * 109.58646 * 294.85038 * 6 5 3 35 35 H 1.08997 * 109.58589 * 174.42601 * 6 5 3 36 36 H 0.97003 * 119.99778 * 354.86653 * 10 8 7 37 37 H 1.08000 * 126.06287 * 359.97438 * 12 11 10 38 38 H 1.08003 * 126.07459 * 180.26436 * 13 12 11 39 39 H 1.09002 * 109.46695 * 4.71066 * 15 14 13 40 40 H 1.08999 * 109.46854 * 244.71345 * 15 14 13 41 41 H 0.96995 * 120.00009 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.58024 * 173.14398 * 25 7 6 43 43 H 1.08998 * 109.58568 * 293.56555 * 25 7 6 44 44 H 1.09001 * 109.47209 * 179.97438 * 28 26 25 45 45 H 1.09000 * 109.47389 * 299.96586 * 28 26 25 46 46 H 1.09009 * 109.47142 * 59.96675 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3444 1.9992 0.5134 5 6 2.2175 1.7712 -1.4430 6 6 2.8085 3.1845 -1.4392 7 7 4.0308 3.1839 -0.6238 8 6 5.1927 3.6446 -1.1278 9 8 6.2165 3.5517 -0.4784 10 7 5.2199 4.2086 -2.3516 11 6 6.4045 4.7842 -2.8320 12 6 7.6294 4.8428 -2.1482 13 6 8.5218 5.4691 -2.9485 14 7 7.8885 5.8036 -4.0925 15 6 8.4852 6.5009 -5.2343 16 6 8.2850 5.6822 -6.4835 17 1 7.7655 4.7367 -6.4320 18 6 8.7658 6.1396 -7.6920 19 7 8.5906 5.4253 -8.7824 20 14 9.6649 7.7746 -7.7811 21 1 11.1179 7.5526 -7.5693 22 1 9.4471 8.3873 -9.1161 23 1 9.1445 8.6836 -6.7283 24 7 6.5626 5.3616 -3.9996 25 6 3.9635 2.6657 0.7494 26 6 3.3584 1.2633 0.7229 27 1 4.0328 0.5881 0.1962 28 6 3.1545 0.7662 2.1554 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.2601 1.7786 -1.9640 33 1 2.9025 1.0918 -1.9503 34 1 2.0861 3.8815 -1.0142 35 1 3.0501 3.4823 -2.4595 36 1 4.4199 4.2160 -2.9001 37 1 7.8252 4.4531 -1.1602 38 1 9.5569 5.6680 -2.7132 39 1 9.5519 6.6399 -5.0581 40 1 8.0074 7.4730 -5.3565 41 1 8.9285 5.7473 -9.6326 42 1 4.9671 2.6212 1.1727 43 1 3.3373 3.3195 1.3564 44 1 2.7223 -0.2343 2.1348 45 1 4.1149 0.7363 2.6699 46 1 2.4809 1.4423 2.6822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365767365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:10 Heat of formation + Delta-G solvation = -2.582492 kcal Electronic energy + Delta-G solvation = -27183.606514 eV Core-core repulsion = 23302.985597 eV Total energy + Delta-G solvation = -3880.620917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34494 -41.40919 -39.80549 -37.48665 -36.32767 -35.31918 -34.36138 -32.95268 -32.46569 -30.97134 -29.07925 -27.96067 -27.53239 -25.76308 -24.48161 -23.40860 -22.83027 -21.96460 -21.23592 -20.46959 -19.22508 -19.08737 -18.11487 -17.56314 -17.33796 -16.88285 -16.52500 -16.29347 -16.13688 -15.87472 -15.47365 -15.33987 -14.83814 -14.79841 -14.42095 -14.35619 -14.22642 -13.85566 -13.82396 -13.48911 -13.37287 -12.97914 -12.94244 -12.72928 -12.52920 -12.31702 -12.18130 -12.00442 -11.94254 -11.82796 -11.62824 -11.47782 -11.39098 -11.08798 -10.86360 -10.43670 -9.91818 -9.70454 -9.03002 -8.36936 -6.47212 1.01080 1.10327 1.37220 1.40417 1.50139 1.65754 1.98990 2.29634 2.35000 2.76022 2.82053 2.95675 3.61695 3.68069 3.89430 3.92511 4.01738 4.18969 4.22630 4.31275 4.40035 4.46561 4.54944 4.60108 4.61210 4.66024 4.67197 4.75398 4.80000 4.85327 4.92573 4.92887 4.93937 5.08752 5.11833 5.13900 5.24647 5.26259 5.36977 5.52458 5.69723 5.90784 6.02119 6.31172 6.41738 6.53836 6.60536 7.06503 7.15835 7.33400 8.80258 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.002368 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.654832 B =11823.126277 C =12600.597557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.098 3.902 4 H 0.086 0.914 5 C -0.154 4.154 6 C 0.107 3.893 7 N -0.619 5.619 8 C 0.714 3.286 9 O -0.598 6.598 10 N -0.640 5.640 11 C 0.283 3.717 12 C -0.294 4.294 13 C 0.062 3.938 14 N -0.345 5.345 15 C 0.240 3.760 16 C -0.547 4.547 17 H 0.025 0.975 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.957 3.043 21 H -0.253 1.253 22 H -0.281 1.281 23 H -0.238 1.238 24 N -0.350 5.350 25 C 0.137 3.863 26 C -0.101 4.101 27 H 0.056 0.944 28 C -0.135 4.135 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.416 0.584 37 H 0.167 0.833 38 H 0.211 0.789 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.272 0.728 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.176 -4.619 22.683 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.040 3.960 4 H 0.104 0.896 5 C -0.193 4.193 6 C -0.015 4.015 7 N -0.356 5.356 8 C 0.415 3.585 9 O -0.476 6.476 10 N -0.293 5.293 11 C 0.028 3.972 12 C -0.325 4.325 13 C -0.086 4.086 14 N -0.127 5.127 15 C 0.120 3.880 16 C -0.585 4.585 17 H 0.043 0.957 18 C -0.186 4.186 19 N -0.582 5.582 20 Si 0.777 3.223 21 H -0.178 1.178 22 H -0.206 1.206 23 H -0.162 1.162 24 N -0.180 5.180 25 C 0.015 3.985 26 C -0.120 4.120 27 H 0.075 0.925 28 C -0.193 4.193 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.256 0.744 37 H 0.184 0.816 38 H 0.228 0.772 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.851 -4.470 21.801 27.323 hybrid contribution 0.145 -0.008 -0.582 0.600 sum -15.707 -4.478 21.219 26.777 Atomic orbital electron populations 1.22960 0.79729 1.03549 1.00939 1.87911 1.21168 1.28132 1.95072 1.22136 0.94391 0.84947 0.94535 0.89612 1.22416 1.02518 0.95949 0.98384 1.21904 0.85956 0.97980 0.95687 1.47344 1.07185 1.65235 1.15809 1.15687 0.84373 0.78246 0.80202 1.90816 1.32706 1.63218 1.60821 1.41638 1.11035 1.59262 1.17398 1.19143 0.88284 0.97512 0.92305 1.21712 0.91513 1.14638 1.04624 1.23237 1.00868 0.98483 0.85999 1.48496 1.05832 1.44077 1.14276 1.19886 0.94633 0.92007 0.81479 1.21236 1.38271 1.06404 0.92553 0.95662 1.25943 0.96295 1.02033 0.94279 1.70055 1.47181 1.40834 1.00124 0.85602 0.79619 0.78122 0.78941 1.17756 1.20636 1.16150 1.77294 0.99514 1.23375 1.17855 1.21624 1.03022 0.93523 0.80378 1.21478 0.95871 0.96396 0.98295 0.92538 1.21643 1.02363 1.01839 0.93474 0.92709 0.93258 0.89162 0.88328 0.92711 0.87682 0.89978 0.74412 0.81584 0.77190 0.90016 0.93571 0.91895 0.89720 0.88551 0.92043 0.92175 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.45 16 2 O -0.40 -6.38 9.62 -148.98 -1.43 -7.81 16 3 C 0.10 1.30 2.02 30.62 0.06 1.36 16 4 H 0.09 0.77 7.78 -2.39 -0.02 0.75 16 5 C -0.15 -2.15 5.69 30.67 0.17 -1.97 16 6 C 0.11 1.53 6.39 86.36 0.55 2.09 16 7 N -0.62 -13.00 2.98 -837.72 -2.50 -15.50 16 8 C 0.71 21.78 8.26 179.06 1.48 23.26 16 9 O -0.60 -21.95 12.91 -4.00 -0.05 -22.00 16 10 N -0.64 -20.88 5.36 -321.23 -1.72 -22.60 16 11 C 0.28 11.70 8.11 133.31 1.08 12.78 16 12 C -0.29 -11.60 9.61 22.11 0.21 -11.39 16 13 C 0.06 2.35 11.44 83.52 0.96 3.30 16 14 N -0.34 -15.72 3.67 -351.86 -1.29 -17.01 16 15 C 0.24 11.19 5.33 85.63 0.46 11.65 16 16 C -0.55 -31.85 9.79 25.60 0.25 -31.60 16 17 H 0.02 1.72 8.06 -2.91 -0.02 1.70 16 18 C 0.01 0.75 5.47 84.65 0.46 1.21 16 19 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 20 Si 0.96 40.86 27.47 68.60 1.88 42.74 16 21 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 24 N -0.35 -16.59 12.42 -54.43 -0.68 -17.26 16 25 C 0.14 2.34 5.70 86.22 0.49 2.83 16 26 C -0.10 -1.59 2.61 -10.86 -0.03 -1.61 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 C -0.14 -1.66 9.04 71.98 0.65 -1.01 16 29 H 0.05 0.36 8.08 -2.38 -0.02 0.34 16 30 H 0.05 0.37 7.85 -2.39 -0.02 0.36 16 31 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.10 1.01 7.85 -2.38 -0.02 0.99 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.22 5.65 -2.39 -0.01 1.21 16 36 H 0.42 11.37 6.31 -92.71 -0.59 10.79 16 37 H 0.17 6.42 5.93 -2.91 -0.02 6.41 16 38 H 0.21 5.82 8.06 -2.91 -0.02 5.80 16 39 H 0.08 3.27 7.50 -2.39 -0.02 3.25 16 40 H 0.05 2.10 7.20 -2.39 -0.02 2.09 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.08 1.81 7.00 -2.38 -0.02 1.79 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 0.84 7.65 -2.39 -0.02 0.82 16 45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -79.97 369.61 2.89 -77.08 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.35 Total: 28.22 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 8.03 Total: 12.35 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -5.88 Total: -130.58 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.48 Total: -29.81 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.88 Total: 42.74 kcal Total: -79.97 2.89 -77.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.499 kcal (2) G-P(sol) polarization free energy of solvation -79.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds