Wall clock time and date at job start Tue Mar 31 2020 14:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09011 * 110.54544 * 2 1 4 4 C 1.54989 * 110.61726 * 237.12577 * 2 1 3 5 5 C 1.54808 * 102.09172 * 204.31358 * 4 2 1 6 6 H 1.09007 * 110.49282 * 262.07311 * 5 4 2 7 7 C 1.53000 * 110.49100 * 139.55391 * 5 4 2 8 8 N 1.46499 * 109.46840 * 66.45326 * 7 5 4 9 9 C 1.34779 * 119.99872 * 180.02562 * 8 7 5 10 10 O 1.21590 * 120.00297 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99768 * 180.02562 * 9 8 7 12 12 C 1.40193 * 119.99530 * 180.02562 * 11 9 8 13 13 C 1.40402 * 125.97708 * 359.97438 * 12 11 9 14 14 C 1.35244 * 107.87085 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.85580 * 0.02562 * 14 13 12 16 16 C 1.46504 * 125.97360 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.46929 * 125.00406 * 16 15 14 18 18 H 1.07998 * 120.00349 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00012 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99759 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00209 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47171 * 59.99514 * 21 19 17 23 23 H 1.48501 * 109.47320 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47146 * 299.99714 * 21 19 17 25 25 N 1.31212 * 125.97222 * 179.69168 * 12 11 9 26 26 C 1.54104 * 104.18714 * 20.87906 * 5 4 2 27 27 H 1.09001 * 109.88204 * 242.60568 * 26 5 4 28 28 C 1.53003 * 109.87767 * 121.45504 * 26 5 4 29 29 O 1.43737 * 107.29188 * 2.02925 * 26 5 4 30 30 H 1.09005 * 109.46934 * 182.87885 * 1 2 3 31 31 H 1.09005 * 109.47067 * 302.87870 * 1 2 3 32 32 H 1.08997 * 109.47737 * 62.87763 * 1 2 3 33 33 H 1.09007 * 110.91258 * 86.11800 * 4 2 1 34 34 H 1.09001 * 110.93913 * 322.52110 * 4 2 1 35 35 H 1.09002 * 109.47398 * 186.45652 * 7 5 4 36 36 H 1.09001 * 109.47194 * 306.45833 * 7 5 4 37 37 H 0.97000 * 120.00420 * 0.02562 * 8 7 5 38 38 H 0.96992 * 119.99896 * 0.02562 * 11 9 8 39 39 H 1.08003 * 126.06468 * 0.02562 * 13 12 11 40 40 H 1.07995 * 126.07126 * 179.97438 * 14 13 12 41 41 H 1.09003 * 109.47079 * 244.99984 * 16 15 14 42 42 H 1.09002 * 109.47029 * 4.99870 * 16 15 14 43 43 H 0.96996 * 119.99945 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.47113 * 59.99877 * 28 26 5 45 45 H 1.08999 * 109.46512 * 180.02562 * 28 26 5 46 46 H 1.09003 * 109.47133 * 299.99699 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0208 0.0000 4 6 2.0758 -0.7874 -1.2183 5 6 3.4811 -1.2119 -0.7270 6 1 4.2406 -0.5278 -1.1058 7 6 3.7897 -2.6462 -1.1613 8 7 3.9024 -2.7008 -2.6209 9 6 4.1716 -3.8712 -3.2326 10 8 4.3206 -4.8818 -2.5731 11 7 4.2758 -3.9214 -4.5755 12 6 4.5554 -5.1389 -5.2118 13 6 4.7497 -6.3759 -4.5767 14 6 4.9945 -7.2998 -5.5336 15 7 4.9580 -6.6761 -6.7300 16 6 5.1700 -7.3060 -8.0356 17 6 3.9897 -7.0212 -8.9282 18 1 3.1640 -6.4306 -8.5597 19 6 3.9633 -7.5157 -10.2150 20 7 4.9686 -8.2353 -10.6636 21 14 2.5000 -7.1633 -11.3212 22 1 2.3547 -5.6960 -11.4976 23 1 2.7148 -7.8016 -12.6447 24 1 1.2672 -7.7118 -10.7010 25 7 4.6761 -5.3226 -6.5054 26 6 3.3875 -1.1217 0.8086 27 1 4.0878 -0.3732 1.1793 28 6 3.7010 -2.4843 1.4298 29 8 2.0417 -0.7347 1.1326 30 1 -0.3633 -1.0264 0.0516 31 1 -0.3633 0.5579 0.8631 32 1 -0.3634 0.4685 -0.9146 33 1 2.1483 -0.1450 -2.0960 34 1 1.4568 -1.6600 -1.4272 35 1 4.7293 -2.9677 -0.7119 36 1 2.9859 -3.3058 -0.8340 37 1 3.7832 -1.8947 -3.1471 38 1 4.1574 -3.1151 -5.1015 39 1 4.7099 -6.5576 -3.5128 40 1 5.1859 -8.3499 -5.3695 41 1 6.0750 -6.9034 -8.4906 42 1 5.2765 -8.3831 -7.9064 43 1 4.9502 -8.5829 -11.5690 44 1 4.7090 -2.7888 1.1482 45 1 3.6325 -2.4130 2.5153 46 1 2.9843 -3.2219 1.0686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413526665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:43 Heat of formation + Delta-G solvation = 4.156214 kcal Electronic energy + Delta-G solvation = -26557.600010 eV Core-core repulsion = 22677.271306 eV Total energy + Delta-G solvation = -3880.328705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82548 -40.38002 -39.37764 -35.74224 -34.62244 -33.45378 -33.18928 -32.46327 -30.79722 -29.28653 -29.16760 -26.96016 -26.10710 -24.15347 -23.06174 -21.83689 -21.61795 -20.51195 -20.31882 -19.62651 -17.93722 -17.35318 -16.69756 -16.55542 -16.19951 -15.77138 -15.68914 -15.12171 -14.83468 -14.70454 -14.29054 -14.15806 -13.81395 -13.53515 -13.11850 -13.01651 -12.77315 -12.61674 -12.41477 -12.31933 -12.25888 -12.20165 -11.81151 -11.62981 -11.25164 -11.20526 -11.05211 -11.00125 -10.86009 -10.43251 -10.24801 -10.09611 -10.01286 -9.68224 -9.49810 -9.22759 -8.62080 -8.08709 -7.40004 -6.23354 -4.28375 2.37206 2.67745 3.12506 3.25746 3.28977 3.33183 3.34638 3.60111 3.85203 4.02526 4.09203 4.26505 4.35131 4.44753 4.52728 4.70145 4.82456 4.95041 4.96830 5.07419 5.11598 5.17538 5.25111 5.31976 5.40290 5.48360 5.52786 5.61666 5.67771 5.73000 5.76909 5.82597 5.90618 6.20799 6.29711 6.55502 6.57694 6.58852 6.88485 7.01784 7.11706 7.50997 7.70405 7.83435 7.98473 8.08230 8.59332 8.67688 8.81737 9.37008 10.85288 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.002127 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.508002 B =13158.852348 C =14113.014592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.069 0.931 4 C -0.149 4.149 5 C -0.134 4.134 6 H 0.091 0.909 7 C 0.149 3.851 8 N -0.745 5.745 9 C 0.713 3.287 10 O -0.567 6.567 11 N -0.644 5.644 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.321 5.321 16 C 0.259 3.741 17 C -0.528 4.528 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 N -0.308 5.308 26 C 0.085 3.915 27 H 0.072 0.928 28 C -0.161 4.161 29 O -0.370 6.370 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.395 0.605 38 H 0.406 0.594 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 16.639 21.606 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.087 0.913 4 C -0.186 4.186 5 C -0.153 4.153 6 H 0.109 0.891 7 C 0.025 3.975 8 N -0.402 5.402 9 C 0.412 3.588 10 O -0.442 6.442 11 N -0.294 5.294 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.103 5.103 16 C 0.141 3.859 17 C -0.567 4.567 18 H 0.086 0.914 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.201 1.201 25 N -0.139 5.139 26 C 0.027 3.973 27 H 0.090 0.910 28 C -0.218 4.218 29 O -0.290 6.290 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.229 0.771 38 H 0.241 0.759 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.440 16.032 21.002 26.645 hybrid contribution -0.670 0.646 -0.731 1.183 sum -4.111 16.678 20.272 26.571 Atomic orbital electron populations 1.21778 0.93032 1.03200 1.02445 1.23091 0.95326 0.95140 0.84975 0.91289 1.23328 0.95444 1.01285 0.98574 1.22842 0.98576 0.97416 0.96472 0.89055 1.21426 1.02528 0.95210 0.78355 1.45047 1.77995 1.09380 1.07811 1.15613 0.78254 0.83910 0.81032 1.90871 1.56379 1.32957 1.64005 1.41379 1.73721 1.09153 1.05113 1.18784 1.02306 0.85917 0.90871 1.21511 1.18770 0.90361 1.01125 1.22556 1.02460 0.99331 0.85570 1.49053 1.49999 1.03603 1.07607 1.19727 0.98644 0.92639 0.74847 1.21220 1.04081 1.34037 0.97322 0.91378 1.24948 0.96811 0.94675 0.97677 1.69908 1.30840 1.34734 1.17898 0.86385 0.82159 0.78750 0.79179 1.19975 1.21052 1.20050 1.77319 1.26838 0.97404 1.12352 1.22613 0.84974 0.97297 0.92465 0.91035 1.22089 1.02490 0.95663 1.01552 1.88921 1.27579 1.73546 1.38935 0.91600 0.91890 0.91028 0.90014 0.89723 0.90766 0.90770 0.77106 0.75944 0.82200 0.81536 0.93768 0.92550 0.92286 0.90590 0.91833 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.66 37.16 0.36 -0.52 16 2 C 0.07 0.47 3.97 -25.68 -0.10 0.37 16 3 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 4 C -0.15 -0.88 5.82 -24.73 -0.14 -1.02 16 5 C -0.13 -0.81 3.11 -89.09 -0.28 -1.09 16 6 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 7 C 0.15 1.24 3.79 -4.04 -0.02 1.23 16 8 N -0.75 -7.05 5.40 -65.22 -0.35 -7.40 16 9 C 0.71 10.29 8.53 -86.91 -0.74 9.55 16 10 O -0.57 -10.16 13.47 5.29 0.07 -10.09 16 11 N -0.64 -9.92 5.46 -15.50 -0.08 -10.00 16 12 C 0.28 5.57 8.11 -154.36 -1.25 4.31 16 13 C -0.29 -5.77 9.61 -39.83 -0.38 -6.15 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 16 C 0.26 6.61 6.26 -5.19 -0.03 6.58 16 17 C -0.53 -14.73 9.23 -34.44 -0.32 -15.05 16 18 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -25.37 13.29 55.43 0.74 -24.63 16 21 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 N -0.31 -7.12 12.41 31.44 0.39 -6.73 16 26 C 0.08 0.59 4.05 -26.15 -0.11 0.48 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 C -0.16 -1.11 8.40 37.16 0.31 -0.80 16 29 O -0.37 -3.26 10.89 -35.23 -0.38 -3.64 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.61 7.75 -51.93 -0.40 0.20 16 35 H 0.07 0.66 6.65 -51.93 -0.35 0.31 16 36 H 0.07 0.73 6.85 -51.93 -0.36 0.37 16 37 H 0.40 2.61 8.34 -40.82 -0.34 2.27 16 38 H 0.41 5.00 8.84 -40.82 -0.36 4.64 16 39 H 0.16 3.17 5.91 -52.48 -0.31 2.86 16 40 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 41 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.08 0.46 6.80 -51.93 -0.35 0.11 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.55 6.75 -51.93 -0.35 0.20 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -33.63 376.30 -9.21 -42.84 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.01 Total: 5.04 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.99 Total: 0.33 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.46 Total: -56.50 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.31 Total: -13.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.63 -9.21 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413526665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.993 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds