Wall clock time and date at job start Tue Mar 31 2020 14:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09011 * 110.54544 * 2 1 4 4 C 1.54989 * 110.61726 * 237.12577 * 2 1 3 5 5 C 1.54808 * 102.09172 * 204.31358 * 4 2 1 6 6 H 1.09007 * 110.49282 * 262.07311 * 5 4 2 7 7 C 1.53000 * 110.49100 * 139.55391 * 5 4 2 8 8 N 1.46499 * 109.46840 * 66.45326 * 7 5 4 9 9 C 1.34779 * 119.99872 * 180.02562 * 8 7 5 10 10 O 1.21590 * 120.00297 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99768 * 180.02562 * 9 8 7 12 12 C 1.40193 * 119.99530 * 180.02562 * 11 9 8 13 13 C 1.40402 * 125.97708 * 359.97438 * 12 11 9 14 14 C 1.35244 * 107.87085 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.85580 * 0.02562 * 14 13 12 16 16 C 1.46504 * 125.97360 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.46929 * 125.00406 * 16 15 14 18 18 H 1.07998 * 120.00349 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00012 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99759 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00209 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47171 * 59.99514 * 21 19 17 23 23 H 1.48501 * 109.47320 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47146 * 299.99714 * 21 19 17 25 25 N 1.31212 * 125.97222 * 179.69168 * 12 11 9 26 26 C 1.54104 * 104.18714 * 20.87906 * 5 4 2 27 27 H 1.09001 * 109.88204 * 242.60568 * 26 5 4 28 28 C 1.53003 * 109.87767 * 121.45504 * 26 5 4 29 29 O 1.43737 * 107.29188 * 2.02925 * 26 5 4 30 30 H 1.09005 * 109.46934 * 182.87885 * 1 2 3 31 31 H 1.09005 * 109.47067 * 302.87870 * 1 2 3 32 32 H 1.08997 * 109.47737 * 62.87763 * 1 2 3 33 33 H 1.09007 * 110.91258 * 86.11800 * 4 2 1 34 34 H 1.09001 * 110.93913 * 322.52110 * 4 2 1 35 35 H 1.09002 * 109.47398 * 186.45652 * 7 5 4 36 36 H 1.09001 * 109.47194 * 306.45833 * 7 5 4 37 37 H 0.97000 * 120.00420 * 0.02562 * 8 7 5 38 38 H 0.96992 * 119.99896 * 0.02562 * 11 9 8 39 39 H 1.08003 * 126.06468 * 0.02562 * 13 12 11 40 40 H 1.07995 * 126.07126 * 179.97438 * 14 13 12 41 41 H 1.09003 * 109.47079 * 244.99984 * 16 15 14 42 42 H 1.09002 * 109.47029 * 4.99870 * 16 15 14 43 43 H 0.96996 * 119.99945 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.47113 * 59.99877 * 28 26 5 45 45 H 1.08999 * 109.46512 * 180.02562 * 28 26 5 46 46 H 1.09003 * 109.47133 * 299.99699 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0208 0.0000 4 6 2.0758 -0.7874 -1.2183 5 6 3.4811 -1.2119 -0.7270 6 1 4.2406 -0.5278 -1.1058 7 6 3.7897 -2.6462 -1.1613 8 7 3.9024 -2.7008 -2.6209 9 6 4.1716 -3.8712 -3.2326 10 8 4.3206 -4.8818 -2.5731 11 7 4.2758 -3.9214 -4.5755 12 6 4.5554 -5.1389 -5.2118 13 6 4.7497 -6.3759 -4.5767 14 6 4.9945 -7.2998 -5.5336 15 7 4.9580 -6.6761 -6.7300 16 6 5.1700 -7.3060 -8.0356 17 6 3.9897 -7.0212 -8.9282 18 1 3.1640 -6.4306 -8.5597 19 6 3.9633 -7.5157 -10.2150 20 7 4.9686 -8.2353 -10.6636 21 14 2.5000 -7.1633 -11.3212 22 1 2.3547 -5.6960 -11.4976 23 1 2.7148 -7.8016 -12.6447 24 1 1.2672 -7.7118 -10.7010 25 7 4.6761 -5.3226 -6.5054 26 6 3.3875 -1.1217 0.8086 27 1 4.0878 -0.3732 1.1793 28 6 3.7010 -2.4843 1.4298 29 8 2.0417 -0.7347 1.1326 30 1 -0.3633 -1.0264 0.0516 31 1 -0.3633 0.5579 0.8631 32 1 -0.3634 0.4685 -0.9146 33 1 2.1483 -0.1450 -2.0960 34 1 1.4568 -1.6600 -1.4272 35 1 4.7293 -2.9677 -0.7119 36 1 2.9859 -3.3058 -0.8340 37 1 3.7832 -1.8947 -3.1471 38 1 4.1574 -3.1151 -5.1015 39 1 4.7099 -6.5576 -3.5128 40 1 5.1859 -8.3499 -5.3695 41 1 6.0750 -6.9034 -8.4906 42 1 5.2765 -8.3831 -7.9064 43 1 4.9502 -8.5829 -11.5690 44 1 4.7090 -2.7888 1.1482 45 1 3.6325 -2.4130 2.5153 46 1 2.9843 -3.2219 1.0686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413526665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:42 Heat of formation + Delta-G solvation = -18.556385 kcal Electronic energy + Delta-G solvation = -26558.584903 eV Core-core repulsion = 22677.271306 eV Total energy + Delta-G solvation = -3881.313597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21602 -41.24352 -40.48647 -36.67738 -36.02799 -35.26534 -33.88817 -33.28439 -32.45358 -30.91779 -29.71884 -28.61758 -27.11987 -25.01985 -24.59801 -23.02847 -22.26222 -21.90754 -21.41685 -20.71959 -19.07654 -18.67646 -18.21803 -17.87697 -17.10488 -16.86617 -16.67027 -16.36307 -15.92727 -15.85069 -15.63669 -15.34823 -15.05122 -14.50396 -14.24149 -14.06684 -13.80781 -13.78875 -13.58616 -13.53755 -13.19445 -12.94210 -12.92719 -12.76690 -12.71833 -12.29587 -12.24327 -12.05965 -11.76965 -11.69572 -11.60853 -11.53518 -11.39193 -11.11787 -10.71102 -10.56464 -10.17597 -9.70706 -9.03678 -8.31657 -6.45884 1.08631 1.15183 1.38956 1.40844 1.49719 1.71981 2.12351 2.36817 2.42865 2.85413 2.99734 3.14880 3.52787 3.54718 3.89767 3.99208 4.03883 4.23040 4.27914 4.29590 4.42528 4.47549 4.55159 4.67328 4.69340 4.73574 4.80282 4.87994 4.91855 4.96201 4.97737 5.02408 5.05524 5.15351 5.18327 5.22312 5.29345 5.34203 5.47952 5.57775 5.77849 5.89711 5.99242 6.07568 6.30581 6.64653 6.78054 7.16763 7.23838 7.44854 8.75550 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.002127 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.508002 B =13158.852348 C =14113.014592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.122 4.122 6 H 0.115 0.885 7 C 0.149 3.851 8 N -0.720 5.720 9 C 0.711 3.289 10 O -0.602 6.602 11 N -0.636 5.636 12 C 0.285 3.715 13 C -0.293 4.293 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.273 3.727 17 C -0.547 4.547 18 H 0.052 0.948 19 C 0.018 3.982 20 N -0.921 5.921 21 Si 0.971 3.029 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.270 1.270 25 N -0.347 5.347 26 C 0.082 3.918 27 H 0.086 0.914 28 C -0.161 4.161 29 O -0.396 6.396 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.421 0.579 39 H 0.166 0.834 40 H 0.200 0.800 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.272 0.728 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 18.266 21.892 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.101 0.899 4 C -0.184 4.184 5 C -0.141 4.141 6 H 0.133 0.867 7 C 0.026 3.974 8 N -0.377 5.377 9 C 0.410 3.590 10 O -0.480 6.480 11 N -0.288 5.288 12 C 0.029 3.971 13 C -0.324 4.324 14 C -0.093 4.093 15 N -0.127 5.127 16 C 0.154 3.846 17 C -0.585 4.585 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.559 5.559 21 Si 0.795 3.205 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.195 1.195 25 N -0.178 5.178 26 C 0.023 3.977 27 H 0.104 0.896 28 C -0.218 4.218 29 O -0.316 6.316 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.250 0.750 38 H 0.258 0.742 39 H 0.184 0.816 40 H 0.217 0.783 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.994 17.726 21.314 28.008 hybrid contribution -0.502 0.196 -0.654 0.847 sum -4.496 17.922 20.660 27.717 Atomic orbital electron populations 1.21798 0.92961 1.02490 1.03216 1.23262 0.95538 0.95674 0.84543 0.89883 1.23328 0.94844 1.01034 0.99199 1.22784 0.99375 0.95986 0.95974 0.86727 1.21499 1.01939 0.96733 0.77230 1.44880 1.76013 1.08460 1.08367 1.15796 0.78034 0.84733 0.80438 1.90843 1.57941 1.34675 1.64547 1.41371 1.73517 1.08274 1.05635 1.19083 1.00182 0.87597 0.90229 1.21684 1.18946 0.90516 1.01297 1.23149 1.00823 1.00907 0.84396 1.48816 1.52155 1.04190 1.07585 1.19328 0.96936 0.92566 0.75767 1.21370 1.04457 1.34339 0.98373 0.92936 1.25749 0.99459 0.94243 0.98829 1.69988 1.32317 1.35148 1.18469 0.85404 0.78853 0.78591 0.77605 1.19777 1.19828 1.19528 1.77239 1.29050 0.97609 1.13941 1.22725 0.84635 0.97366 0.92924 0.89603 1.22089 1.02498 0.95667 1.01551 1.88904 1.28511 1.74036 1.40167 0.92940 0.92000 0.89493 0.87809 0.91237 0.90913 0.92355 0.74974 0.74180 0.81648 0.78308 0.96054 0.92418 0.91851 0.89787 0.91935 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.66 71.98 0.70 -0.89 16 2 C 0.07 0.76 3.97 31.28 0.12 0.88 16 3 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 4 C -0.15 -1.39 5.82 31.89 0.19 -1.21 16 5 C -0.12 -1.18 3.11 -9.80 -0.03 -1.21 16 6 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 7 C 0.15 2.26 3.79 86.38 0.33 2.59 16 8 N -0.72 -12.08 5.40 -478.52 -2.58 -14.67 16 9 C 0.71 19.56 8.53 179.05 1.53 21.08 16 10 O -0.60 -21.14 13.47 -4.00 -0.05 -21.19 16 11 N -0.64 -18.83 5.46 -321.22 -1.75 -20.58 16 12 C 0.28 11.40 8.11 133.31 1.08 12.48 16 13 C -0.29 -11.66 9.61 22.11 0.21 -11.45 16 14 C 0.06 2.23 11.44 83.52 0.96 3.18 16 15 N -0.35 -16.35 3.67 -351.84 -1.29 -17.64 16 16 C 0.27 14.23 6.26 85.63 0.54 14.76 16 17 C -0.55 -30.94 9.23 25.60 0.24 -30.70 16 18 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 19 C 0.02 0.97 5.46 84.66 0.46 1.43 16 20 N -0.92 -52.24 13.29 21.45 0.28 -51.95 16 21 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 N -0.35 -16.16 12.41 -54.43 -0.68 -16.84 16 26 C 0.08 0.99 4.05 30.97 0.13 1.11 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 C -0.16 -2.12 8.40 71.98 0.60 -1.51 16 29 O -0.40 -6.53 10.89 -148.98 -1.62 -8.15 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.07 0.90 7.75 -2.39 -0.02 0.88 16 35 H 0.07 1.18 6.65 -2.39 -0.02 1.16 16 36 H 0.06 1.12 6.85 -2.39 -0.02 1.10 16 37 H 0.41 4.17 8.34 -92.71 -0.77 3.40 16 38 H 0.42 9.68 8.84 -92.71 -0.82 8.86 16 39 H 0.17 6.45 5.91 -2.91 -0.02 6.43 16 40 H 0.20 6.32 8.06 -2.91 -0.02 6.29 16 41 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 2.94 8.07 -2.39 -0.02 2.92 16 43 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.08 0.94 6.80 -2.39 -0.02 0.92 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.89 6.75 -2.39 -0.02 0.87 16 Total: -1.00 -72.97 376.30 0.79 -72.18 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.58 Total: 22.73 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 7.04 Total: 10.56 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.02 Total: -121.68 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.68 Total: -29.34 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -72.97 0.79 -72.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413526665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.627 kcal (2) G-P(sol) polarization free energy of solvation -72.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds