Wall clock time and date at job start Tue Mar 31 2020 14:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.27494 * 2 1 4 4 C 1.54948 * 110.39177 * 237.85631 * 2 1 3 5 5 C 1.55310 * 100.93868 * 204.59493 * 4 2 1 6 6 H 1.08998 * 111.02065 * 275.86138 * 5 4 2 7 7 C 1.53004 * 110.84622 * 152.32567 * 5 4 2 8 8 N 1.46499 * 109.47198 * 72.16772 * 7 5 4 9 9 C 1.34777 * 119.99665 * 180.27868 * 8 7 5 10 10 O 1.21593 * 120.00264 * 359.72086 * 9 8 7 11 11 N 1.34775 * 119.99585 * 179.72218 * 9 8 7 12 12 C 1.40194 * 119.99802 * 179.97438 * 11 9 8 13 13 C 1.40406 * 125.97588 * 0.02562 * 12 11 9 14 14 C 1.35239 * 107.86908 * 179.97438 * 13 12 11 15 15 N 1.34964 * 107.85911 * 359.97438 * 14 13 12 16 16 C 1.46504 * 125.97610 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47066 * 125.00513 * 16 15 14 18 18 H 1.07997 * 120.00174 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00208 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99688 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00533 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46779 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47356 * 119.99279 * 21 19 17 24 24 H 1.48505 * 109.46989 * 239.99845 * 21 19 17 25 25 N 1.31212 * 125.97467 * 179.69098 * 12 11 9 26 26 C 1.54383 * 102.25548 * 34.13587 * 5 4 2 27 27 H 1.09000 * 109.83036 * 98.24528 * 26 5 4 28 28 C 1.52991 * 109.83127 * 219.12956 * 26 5 4 29 29 O 1.43246 * 107.58431 * 338.64287 * 26 5 4 30 30 H 1.09001 * 109.47016 * 299.35738 * 1 2 3 31 31 H 1.08994 * 109.47074 * 59.36197 * 1 2 3 32 32 H 1.09007 * 109.46704 * 179.36013 * 1 2 3 33 33 H 1.08996 * 111.12852 * 86.67826 * 4 2 1 34 34 H 1.09001 * 111.12678 * 322.51337 * 4 2 1 35 35 H 1.09009 * 109.46730 * 312.16559 * 7 5 4 36 36 H 1.08998 * 109.46846 * 192.17103 * 7 5 4 37 37 H 0.97001 * 119.99790 * 359.97438 * 8 7 5 38 38 H 0.97000 * 120.00523 * 0.02562 * 11 9 8 39 39 H 1.08004 * 126.05894 * 359.97438 * 13 12 11 40 40 H 1.08003 * 126.06728 * 180.02562 * 14 13 12 41 41 H 1.09003 * 109.46933 * 245.00823 * 16 15 14 42 42 H 1.09008 * 109.46756 * 5.00258 * 16 15 14 43 43 H 0.97003 * 120.00217 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.47395 * 59.99655 * 28 26 5 45 45 H 1.08997 * 109.47499 * 179.97438 * 28 26 5 46 46 H 1.09000 * 109.47230 * 299.99915 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0699 -0.7727 -1.2298 5 6 3.4722 -1.2000 -0.7169 6 1 4.2014 -0.4030 -0.8626 7 6 3.9332 -2.4882 -1.4018 8 7 4.2846 -2.2018 -2.7949 9 6 4.7149 -3.1942 -3.5990 10 8 4.8162 -4.3262 -3.1668 11 7 5.0328 -2.9318 -4.8821 12 6 5.4809 -3.9639 -5.7184 13 6 5.6442 -5.3097 -5.3527 14 6 6.0916 -5.9830 -6.4369 15 7 6.2081 -5.1017 -7.4524 16 6 6.6619 -5.4091 -8.8110 17 6 5.6233 -4.9530 -9.8029 18 1 4.7160 -4.4808 -9.4561 19 6 5.8311 -5.1383 -11.1533 20 7 6.9362 -5.7128 -11.5756 21 14 4.5440 -4.5722 -12.3830 22 1 3.4017 -3.9604 -11.6575 23 1 5.1427 -3.5694 -13.3000 24 1 4.0639 -5.7373 -13.1687 25 7 5.8152 -3.8424 -6.9814 26 6 3.2126 -1.4394 0.7860 27 1 3.0667 -2.5037 0.9711 28 6 4.3990 -0.9281 1.6055 29 8 2.0286 -0.7158 1.1413 30 1 -0.3633 0.5038 0.8957 31 1 -0.3633 0.5237 -0.8842 32 1 -0.3633 -1.0277 -0.0115 33 1 2.1516 -0.1202 -2.0990 34 1 1.4506 -1.6421 -1.4504 35 1 3.1282 -3.2227 -1.3737 36 1 4.8050 -2.8845 -0.8812 37 1 4.2034 -1.2989 -3.1398 38 1 4.9524 -2.0287 -5.2269 39 1 5.4474 -5.7321 -4.3784 40 1 6.3152 -7.0386 -6.4822 41 1 7.6019 -4.8927 -9.0057 42 1 6.8110 -6.4845 -8.9096 43 1 7.0827 -5.8430 -12.5257 44 1 4.5300 0.1394 1.4283 45 1 4.2095 -1.0995 2.6651 46 1 5.3027 -1.4594 1.3071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413526669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:46 Heat of formation + Delta-G solvation = -1.288958 kcal Electronic energy + Delta-G solvation = -26360.467454 eV Core-core repulsion = 22479.902630 eV Total energy + Delta-G solvation = -3880.564825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80024 -40.34354 -39.42026 -35.69902 -34.63947 -33.41062 -33.17972 -32.49602 -30.83615 -29.37722 -29.22723 -27.03104 -26.28455 -23.79126 -22.96891 -21.87748 -21.45519 -21.01388 -20.29538 -19.72978 -17.95854 -17.50310 -16.72843 -16.56944 -16.03995 -15.81863 -15.52909 -14.89627 -14.74607 -14.69737 -14.30729 -14.15486 -13.90923 -13.66235 -13.33836 -13.06381 -12.91710 -12.78089 -12.33343 -12.25722 -12.21977 -12.16011 -11.93262 -11.74560 -11.32319 -11.26615 -11.09960 -11.01516 -10.88337 -10.42362 -10.26457 -10.09414 -9.91570 -9.69471 -9.48497 -9.27964 -8.63733 -8.09856 -7.41173 -6.24357 -4.29201 2.34081 2.66302 3.10949 3.21863 3.29353 3.29927 3.35632 3.56835 3.83706 3.96469 4.12496 4.21531 4.31799 4.40403 4.64002 4.68472 4.77530 4.91685 4.95127 5.01488 5.10785 5.15009 5.22878 5.32721 5.40637 5.46095 5.52892 5.58474 5.60825 5.73645 5.78578 5.80872 5.83144 6.17031 6.27333 6.54196 6.56741 6.67166 6.87264 7.00544 7.10480 7.49605 7.69902 7.82076 7.96852 8.07195 8.56886 8.66808 8.81437 9.36369 10.84357 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.002047 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.281585 B =13673.822545 C =14599.245531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.076 3.924 3 H 0.069 0.931 4 C -0.149 4.149 5 C -0.133 4.133 6 H 0.094 0.906 7 C 0.152 3.848 8 N -0.744 5.744 9 C 0.713 3.287 10 O -0.567 6.567 11 N -0.643 5.643 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.320 5.320 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.308 5.308 26 C 0.086 3.914 27 H 0.085 0.915 28 C -0.163 4.163 29 O -0.374 6.374 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.396 0.604 38 H 0.406 0.594 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 11.259 23.788 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 H 0.087 0.913 4 C -0.186 4.186 5 C -0.152 4.152 6 H 0.113 0.887 7 C 0.028 3.972 8 N -0.401 5.401 9 C 0.412 3.588 10 O -0.442 6.442 11 N -0.293 5.293 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.141 3.859 17 C -0.565 4.565 18 H 0.087 0.913 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.139 5.139 26 C 0.028 3.972 27 H 0.103 0.897 28 C -0.221 4.221 29 O -0.294 6.294 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.230 0.770 38 H 0.241 0.759 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.533 10.914 23.138 26.669 hybrid contribution -0.607 0.649 -0.747 1.161 sum -8.140 11.562 22.392 26.483 Atomic orbital electron populations 1.21892 0.93609 1.02991 1.02443 1.22938 0.94964 0.95447 0.84773 0.91272 1.23453 0.95396 1.01340 0.98451 1.23060 0.98166 0.98612 0.95353 0.88741 1.21112 1.00798 0.95534 0.79748 1.44966 1.72599 1.10771 1.11766 1.15603 0.78327 0.84755 0.80094 1.90876 1.58997 1.19946 1.74376 1.41368 1.68436 1.10672 1.08844 1.18782 1.01062 0.88232 0.89830 1.21510 1.17016 0.91753 1.01496 1.22556 1.01895 0.97166 0.88287 1.49052 1.47008 1.03056 1.11117 1.19742 0.96347 0.97553 0.72301 1.21297 1.04582 1.40138 0.90495 0.91264 1.24955 0.96040 0.94881 0.98305 1.69930 1.25116 1.42721 1.15604 0.86275 0.81218 0.78437 0.80581 1.19592 1.20711 1.20769 1.77318 1.24321 1.04355 1.07886 1.22609 0.85770 0.96743 0.92044 0.89703 1.22158 0.97214 1.01791 1.00893 1.88465 1.41923 1.64909 1.34135 0.91879 0.91165 0.91800 0.89729 0.89670 0.90973 0.90962 0.76988 0.75915 0.82203 0.81524 0.93751 0.92530 0.92396 0.92209 0.91732 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.63 37.16 0.36 -0.53 16 2 C 0.08 0.50 4.07 -25.70 -0.10 0.39 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 4 C -0.15 -0.85 5.97 -24.48 -0.15 -1.00 16 5 C -0.13 -0.78 2.54 -88.67 -0.22 -1.01 16 6 H 0.09 0.48 7.85 -51.93 -0.41 0.07 16 7 C 0.15 1.22 4.98 -4.04 -0.02 1.20 16 8 N -0.74 -6.84 5.49 -65.22 -0.36 -7.20 16 9 C 0.71 10.17 8.53 -86.92 -0.74 9.42 16 10 O -0.57 -10.08 13.47 5.28 0.07 -10.01 16 11 N -0.64 -9.81 5.46 -15.50 -0.08 -9.90 16 12 C 0.27 5.53 8.11 -154.36 -1.25 4.28 16 13 C -0.29 -5.74 9.61 -39.83 -0.38 -6.12 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.47 3.67 -62.56 -0.23 -7.70 16 16 C 0.26 6.57 6.26 -5.20 -0.03 6.53 16 17 C -0.53 -14.65 9.23 -34.44 -0.32 -14.97 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 21 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 N -0.31 -7.08 12.42 31.44 0.39 -6.69 16 26 C 0.09 0.59 3.77 -26.01 -0.10 0.50 16 27 H 0.09 0.58 7.81 -51.93 -0.41 0.18 16 28 C -0.16 -0.97 9.44 37.15 0.35 -0.62 16 29 O -0.37 -3.22 10.70 -35.23 -0.38 -3.59 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.56 7.84 -51.93 -0.41 0.15 16 35 H 0.07 0.66 7.99 -51.92 -0.41 0.24 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 2.51 8.49 -40.82 -0.35 2.16 16 38 H 0.41 4.94 8.84 -40.82 -0.36 4.58 16 39 H 0.16 3.15 5.91 -52.48 -0.31 2.84 16 40 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 41 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.41 8.07 -51.92 -0.42 0.99 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -33.59 382.76 -9.28 -42.87 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.27 Total: 4.26 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.91 Total: 0.48 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.45 Total: -56.07 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.31 Total: -13.60 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.59 -9.28 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413526669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.582 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds