Wall clock time and date at job start Tue Mar 31 2020 14:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.35032 * 2 1 4 4 C 1.54945 * 110.31188 * 237.85883 * 2 1 3 5 5 C 1.55301 * 100.94080 * 277.53078 * 4 2 1 6 6 H 1.08994 * 111.02855 * 84.13516 * 5 4 2 7 7 C 1.52999 * 110.84757 * 207.67514 * 5 4 2 8 8 N 1.46501 * 109.47314 * 287.83090 * 7 5 4 9 9 C 1.34781 * 120.00218 * 179.97438 * 8 7 5 10 10 O 1.21596 * 119.99748 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99756 * 179.97438 * 9 8 7 12 12 C 1.40201 * 119.99363 * 179.97438 * 11 9 8 13 13 C 1.40395 * 125.97724 * 0.02562 * 12 11 9 14 14 C 1.35245 * 107.87017 * 180.02562 * 13 12 11 15 15 N 1.34968 * 107.85583 * 0.02562 * 14 13 12 16 16 C 1.46495 * 125.97310 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47050 * 124.99554 * 16 15 14 18 18 H 1.07994 * 120.00506 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99917 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99857 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47188 * 89.99997 * 21 19 17 23 23 H 1.48505 * 109.46770 * 209.99857 * 21 19 17 24 24 H 1.48500 * 109.47261 * 329.99872 * 21 19 17 25 25 N 1.31217 * 125.96597 * 179.68974 * 12 11 9 26 26 C 1.54381 * 102.25481 * 325.86233 * 5 4 2 27 27 H 1.08999 * 109.83351 * 140.86985 * 26 5 4 28 28 C 1.52994 * 109.90781 * 261.80498 * 26 5 4 29 29 O 1.43240 * 107.58517 * 21.36000 * 26 5 4 30 30 H 1.08998 * 109.47404 * 299.31167 * 1 2 3 31 31 H 1.09004 * 109.47453 * 59.31017 * 1 2 3 32 32 H 1.09003 * 109.47270 * 179.30781 * 1 2 3 33 33 H 1.09002 * 111.12670 * 35.44501 * 4 2 1 34 34 H 1.08995 * 111.12824 * 159.60834 * 4 2 1 35 35 H 1.09002 * 109.47404 * 47.83078 * 7 5 4 36 36 H 1.08999 * 109.47577 * 167.83084 * 7 5 4 37 37 H 0.96997 * 119.99617 * 359.97438 * 8 7 5 38 38 H 0.96997 * 120.00079 * 359.97438 * 11 9 8 39 39 H 1.08003 * 126.06410 * 359.97438 * 13 12 11 40 40 H 1.07995 * 126.07002 * 180.02562 * 14 13 12 41 41 H 1.09003 * 109.46835 * 244.99218 * 16 15 14 42 42 H 1.09003 * 109.47600 * 4.99320 * 16 15 14 43 43 H 0.96995 * 120.00072 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.47316 * 179.62895 * 28 26 5 45 45 H 1.09001 * 109.46998 * 299.63009 * 28 26 5 46 46 H 1.08998 * 109.47371 * 59.62809 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0678 -0.7731 -1.2304 5 6 1.9827 -2.2370 -0.7190 6 1 0.9826 -2.6447 -0.8650 7 6 3.0314 -3.1151 -1.4046 8 7 2.6412 -3.3442 -2.7980 9 6 3.4204 -4.0952 -3.6013 10 8 4.4471 -4.5829 -3.1695 11 7 3.0610 -4.3064 -4.8830 12 6 3.8719 -5.0871 -5.7188 13 6 5.0778 -5.7064 -5.3537 14 6 5.5520 -6.3626 -6.4371 15 7 4.6832 -6.1684 -7.4515 16 6 4.8115 -6.7043 -8.8089 17 6 3.5684 -7.4793 -9.1626 18 1 2.7635 -7.5646 -8.4477 19 6 3.4587 -8.0796 -10.3991 20 7 4.4387 -7.9754 -11.2699 21 14 1.9181 -9.0409 -10.8372 22 1 0.9289 -8.1302 -11.4676 23 1 2.2664 -10.1276 -11.7875 24 1 1.3344 -9.6290 -9.6049 25 7 3.6332 -5.3717 -6.9772 26 6 2.2972 -2.0778 0.7840 27 1 1.6626 -2.7450 1.3673 28 6 3.7694 -2.4020 1.0454 29 8 2.0286 -0.7168 1.1406 30 1 -0.3634 0.5031 0.8961 31 1 -0.3634 0.5245 -0.8837 32 1 -0.3634 -1.0276 -0.0124 33 1 1.4274 -0.6228 -2.0995 34 1 3.0979 -0.4931 -1.4507 35 1 3.9993 -2.6146 -1.3760 36 1 3.1012 -4.0707 -0.8850 37 1 1.8219 -2.9555 -3.1423 38 1 2.2414 -3.9182 -5.2271 39 1 5.5445 -5.6654 -4.3806 40 1 6.4638 -6.9395 -6.4824 41 1 4.9400 -5.8824 -9.5133 42 1 5.6776 -7.3642 -8.8587 43 1 4.3614 -8.3973 -12.1399 44 1 3.9852 -2.2810 2.1071 45 1 3.9733 -3.4306 0.7481 46 1 4.3987 -1.7252 0.4674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413526672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:49 Heat of formation + Delta-G solvation = 2.807909 kcal Electronic energy + Delta-G solvation = -26555.814254 eV Core-core repulsion = 22675.427083 eV Total energy + Delta-G solvation = -3880.387171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86505 -40.46540 -39.42238 -35.75607 -34.63551 -33.42060 -33.03424 -32.58756 -30.81712 -29.28899 -28.81028 -26.95449 -26.20036 -24.88471 -23.08561 -21.83630 -21.29942 -20.58122 -20.30300 -19.64811 -17.97120 -17.02188 -16.76545 -16.56846 -16.22480 -15.80075 -15.72544 -15.38508 -14.80945 -14.44661 -14.38393 -14.07538 -13.85560 -13.52726 -13.18685 -13.10362 -12.78401 -12.74651 -12.59913 -12.31724 -12.31640 -12.21228 -11.82351 -11.72478 -11.15587 -11.09801 -11.08233 -11.02141 -10.89246 -10.42336 -10.25747 -10.09208 -9.97191 -9.69497 -9.49371 -9.25934 -8.63107 -8.09652 -7.41001 -6.24050 -4.28974 2.35131 2.66583 3.11163 3.23498 3.29243 3.32309 3.34345 3.58002 3.83810 3.94011 4.15994 4.24314 4.33700 4.42551 4.59735 4.61991 4.78033 4.86746 4.95031 5.06444 5.10982 5.18827 5.25948 5.31660 5.38440 5.49265 5.52439 5.59056 5.62677 5.69911 5.78009 5.81825 5.90615 6.18844 6.28141 6.54432 6.57269 6.66804 6.87487 7.00805 7.10765 7.49859 7.69934 7.82397 7.97247 8.07356 8.57524 8.66862 8.81355 9.36486 10.84624 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.002035 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.615316 B =13755.972583 C =14375.335856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.075 3.925 3 H 0.094 0.906 4 C -0.147 4.147 5 C -0.132 4.132 6 H 0.093 0.907 7 C 0.151 3.849 8 N -0.745 5.745 9 C 0.713 3.287 10 O -0.567 6.567 11 N -0.644 5.644 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.321 5.321 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.308 5.308 26 C 0.088 3.912 27 H 0.080 0.920 28 C -0.169 4.169 29 O -0.372 6.372 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.396 0.604 38 H 0.406 0.594 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.267 0.733 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 14.617 22.421 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 H 0.112 0.888 4 C -0.184 4.184 5 C -0.151 4.151 6 H 0.111 0.889 7 C 0.027 3.973 8 N -0.402 5.402 9 C 0.412 3.588 10 O -0.442 6.442 11 N -0.293 5.293 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.141 3.859 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.139 5.139 26 C 0.029 3.971 27 H 0.098 0.902 28 C -0.226 4.226 29 O -0.292 6.292 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.229 0.771 38 H 0.241 0.759 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.183 14.298 21.751 26.541 hybrid contribution -1.172 -0.375 -0.339 1.276 sum -6.355 13.923 21.412 26.319 Atomic orbital electron populations 1.22248 0.95416 1.02616 1.02519 1.22954 0.93886 0.96564 0.84837 0.88766 1.23407 1.02913 0.93667 0.98458 1.22998 1.00409 0.96171 0.95519 0.88886 1.21296 0.97217 0.99319 0.79484 1.45026 1.27178 1.56103 1.11910 1.15605 0.83460 0.79640 0.80080 1.90874 1.25080 1.53937 1.74324 1.41374 1.25984 1.52974 1.09006 1.18784 0.92384 0.96586 0.90142 1.21508 0.99084 1.09759 1.01417 1.22558 0.97425 1.01514 0.88409 1.49054 1.13624 1.36060 1.11505 1.19735 0.99160 0.94394 0.72619 1.21260 1.02285 1.32406 1.00640 0.91320 1.24954 0.97128 0.96299 0.95772 1.69918 1.31919 1.44316 1.07214 0.86325 0.82454 0.79362 0.78328 1.20363 1.20991 1.19743 1.77322 1.11758 1.16306 1.08509 1.22585 0.96971 0.84313 0.93188 0.90179 1.22252 0.95206 1.02406 1.02760 1.88493 1.85042 1.21539 1.34108 0.91845 0.91494 0.92240 0.89658 0.89822 0.90664 0.90895 0.77069 0.75926 0.82199 0.81530 0.93760 0.92536 0.92341 0.91818 0.90652 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 9.53 37.16 0.35 -0.54 16 2 C 0.07 0.46 4.19 -25.71 -0.11 0.36 16 3 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.15 -0.80 6.03 -24.49 -0.15 -0.95 16 5 C -0.13 -0.77 2.55 -88.68 -0.23 -1.00 16 6 H 0.09 0.47 7.78 -51.93 -0.40 0.07 16 7 C 0.15 1.21 3.82 -4.04 -0.02 1.19 16 8 N -0.75 -6.84 5.49 -65.22 -0.36 -7.20 16 9 C 0.71 10.14 8.53 -86.92 -0.74 9.40 16 10 O -0.57 -10.03 13.47 5.28 0.07 -9.96 16 11 N -0.64 -9.80 5.46 -15.50 -0.08 -9.89 16 12 C 0.28 5.52 8.11 -154.35 -1.25 4.27 16 13 C -0.29 -5.73 9.61 -39.84 -0.38 -6.11 16 14 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.48 3.67 -62.56 -0.23 -7.71 16 16 C 0.26 6.58 6.26 -5.20 -0.03 6.54 16 17 C -0.53 -14.68 9.23 -34.44 -0.32 -14.99 16 18 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 21 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 N -0.31 -7.08 12.41 31.44 0.39 -6.69 16 26 C 0.09 0.60 4.10 -26.01 -0.11 0.49 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 C -0.17 -1.14 8.37 37.15 0.31 -0.83 16 29 O -0.37 -3.12 10.70 -35.23 -0.38 -3.50 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.31 7.46 -51.93 -0.39 -0.07 16 33 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 34 H 0.08 0.51 7.93 -51.93 -0.41 0.10 16 35 H 0.08 0.67 6.83 -51.93 -0.35 0.32 16 36 H 0.07 0.64 7.26 -51.93 -0.38 0.26 16 37 H 0.40 2.51 8.49 -40.82 -0.35 2.16 16 38 H 0.41 4.93 8.84 -40.82 -0.36 4.57 16 39 H 0.16 3.14 5.91 -52.48 -0.31 2.83 16 40 H 0.17 2.74 8.06 -52.49 -0.42 2.31 16 41 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.48 6.55 -51.93 -0.34 0.14 16 46 H 0.06 0.46 7.57 -51.93 -0.39 0.06 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -33.49 376.31 -9.19 -42.68 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.03 Total: 4.62 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.96 Total: 0.23 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.45 Total: -56.06 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.31 Total: -13.46 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.49 -9.19 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413526672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.486 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds