Wall clock time and date at job start Tue Mar 31 2020 14:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.35032 * 2 1 4 4 C 1.54945 * 110.31188 * 237.85883 * 2 1 3 5 5 C 1.55301 * 100.94080 * 277.53078 * 4 2 1 6 6 H 1.08994 * 111.02855 * 84.13516 * 5 4 2 7 7 C 1.52999 * 110.84757 * 207.67514 * 5 4 2 8 8 N 1.46501 * 109.47314 * 287.83090 * 7 5 4 9 9 C 1.34781 * 120.00218 * 179.97438 * 8 7 5 10 10 O 1.21596 * 119.99748 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99756 * 179.97438 * 9 8 7 12 12 C 1.40201 * 119.99363 * 179.97438 * 11 9 8 13 13 C 1.40395 * 125.97724 * 0.02562 * 12 11 9 14 14 C 1.35245 * 107.87017 * 180.02562 * 13 12 11 15 15 N 1.34968 * 107.85583 * 0.02562 * 14 13 12 16 16 C 1.46495 * 125.97310 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47050 * 124.99554 * 16 15 14 18 18 H 1.07994 * 120.00506 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99917 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99857 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47188 * 89.99997 * 21 19 17 23 23 H 1.48505 * 109.46770 * 209.99857 * 21 19 17 24 24 H 1.48500 * 109.47261 * 329.99872 * 21 19 17 25 25 N 1.31217 * 125.96597 * 179.68974 * 12 11 9 26 26 C 1.54381 * 102.25481 * 325.86233 * 5 4 2 27 27 H 1.08999 * 109.83351 * 140.86985 * 26 5 4 28 28 C 1.52994 * 109.90781 * 261.80498 * 26 5 4 29 29 O 1.43240 * 107.58517 * 21.36000 * 26 5 4 30 30 H 1.08998 * 109.47404 * 299.31167 * 1 2 3 31 31 H 1.09004 * 109.47453 * 59.31017 * 1 2 3 32 32 H 1.09003 * 109.47270 * 179.30781 * 1 2 3 33 33 H 1.09002 * 111.12670 * 35.44501 * 4 2 1 34 34 H 1.08995 * 111.12824 * 159.60834 * 4 2 1 35 35 H 1.09002 * 109.47404 * 47.83078 * 7 5 4 36 36 H 1.08999 * 109.47577 * 167.83084 * 7 5 4 37 37 H 0.96997 * 119.99617 * 359.97438 * 8 7 5 38 38 H 0.96997 * 120.00079 * 359.97438 * 11 9 8 39 39 H 1.08003 * 126.06410 * 359.97438 * 13 12 11 40 40 H 1.07995 * 126.07002 * 180.02562 * 14 13 12 41 41 H 1.09003 * 109.46835 * 244.99218 * 16 15 14 42 42 H 1.09003 * 109.47600 * 4.99320 * 16 15 14 43 43 H 0.96995 * 120.00072 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.47316 * 179.62895 * 28 26 5 45 45 H 1.09001 * 109.46998 * 299.63009 * 28 26 5 46 46 H 1.08998 * 109.47371 * 59.62809 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0678 -0.7731 -1.2304 5 6 1.9827 -2.2370 -0.7190 6 1 0.9826 -2.6447 -0.8650 7 6 3.0314 -3.1151 -1.4046 8 7 2.6412 -3.3442 -2.7980 9 6 3.4204 -4.0952 -3.6013 10 8 4.4471 -4.5829 -3.1695 11 7 3.0610 -4.3064 -4.8830 12 6 3.8719 -5.0871 -5.7188 13 6 5.0778 -5.7064 -5.3537 14 6 5.5520 -6.3626 -6.4371 15 7 4.6832 -6.1684 -7.4515 16 6 4.8115 -6.7043 -8.8089 17 6 3.5684 -7.4793 -9.1626 18 1 2.7635 -7.5646 -8.4477 19 6 3.4587 -8.0796 -10.3991 20 7 4.4387 -7.9754 -11.2699 21 14 1.9181 -9.0409 -10.8372 22 1 0.9289 -8.1302 -11.4676 23 1 2.2664 -10.1276 -11.7875 24 1 1.3344 -9.6290 -9.6049 25 7 3.6332 -5.3717 -6.9772 26 6 2.2972 -2.0778 0.7840 27 1 1.6626 -2.7450 1.3673 28 6 3.7694 -2.4020 1.0454 29 8 2.0286 -0.7168 1.1406 30 1 -0.3634 0.5031 0.8961 31 1 -0.3634 0.5245 -0.8837 32 1 -0.3634 -1.0276 -0.0124 33 1 1.4274 -0.6228 -2.0995 34 1 3.0979 -0.4931 -1.4507 35 1 3.9993 -2.6146 -1.3760 36 1 3.1012 -4.0707 -0.8850 37 1 1.8219 -2.9555 -3.1423 38 1 2.2414 -3.9182 -5.2271 39 1 5.5445 -5.6654 -4.3806 40 1 6.4638 -6.9395 -6.4824 41 1 4.9400 -5.8824 -9.5133 42 1 5.6776 -7.3642 -8.8587 43 1 4.3614 -8.3973 -12.1399 44 1 3.9852 -2.2810 2.1071 45 1 3.9733 -3.4306 0.7481 46 1 4.3987 -1.7252 0.4674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413526672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:48 Heat of formation + Delta-G solvation = -19.719000 kcal Electronic energy + Delta-G solvation = -26556.791094 eV Core-core repulsion = 22675.427083 eV Total energy + Delta-G solvation = -3881.364012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21183 -41.29493 -40.55845 -36.67970 -36.02213 -35.26260 -33.70635 -33.33023 -32.48294 -30.91507 -29.36984 -28.56957 -27.11956 -25.52351 -24.86651 -23.05098 -22.04877 -21.73631 -21.45273 -20.72364 -19.08547 -18.67925 -18.21154 -17.53972 -17.22299 -16.80097 -16.65203 -16.39679 -16.13133 -15.91007 -15.51887 -15.32311 -14.92038 -14.47964 -14.25550 -14.06072 -13.78725 -13.75988 -13.66915 -13.56595 -13.25485 -13.12024 -12.92101 -12.77700 -12.73024 -12.34998 -12.28198 -12.04324 -11.71373 -11.61188 -11.56420 -11.53009 -11.37898 -11.10407 -10.71324 -10.50310 -10.18525 -9.70391 -9.03445 -8.31747 -6.45861 1.08869 1.15382 1.38953 1.39577 1.51154 1.72371 2.12462 2.36789 2.43239 2.83412 2.99636 3.13563 3.46734 3.62428 3.88041 3.99656 4.11105 4.16105 4.25238 4.30001 4.41867 4.44154 4.55454 4.65808 4.69676 4.80286 4.85652 4.86950 4.92036 4.96554 5.00338 5.04366 5.08539 5.12198 5.17135 5.20605 5.34983 5.38112 5.48438 5.58051 5.77907 5.89820 5.99568 6.17017 6.30853 6.65006 6.78145 7.17033 7.23928 7.45021 8.75627 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.002035 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.615316 B =13755.972583 C =14375.335856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 H 0.096 0.904 4 C -0.144 4.144 5 C -0.120 4.120 6 H 0.109 0.891 7 C 0.152 3.848 8 N -0.720 5.720 9 C 0.711 3.289 10 O -0.602 6.602 11 N -0.636 5.636 12 C 0.285 3.715 13 C -0.293 4.293 14 C 0.056 3.944 15 N -0.346 5.346 16 C 0.272 3.728 17 C -0.546 4.546 18 H 0.052 0.948 19 C 0.017 3.983 20 N -0.921 5.921 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.273 1.273 25 N -0.348 5.348 26 C 0.085 3.915 27 H 0.087 0.913 28 C -0.168 4.168 29 O -0.394 6.394 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.414 0.586 38 H 0.421 0.579 39 H 0.167 0.833 40 H 0.200 0.800 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.272 0.728 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 14.819 23.143 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 H 0.114 0.886 4 C -0.181 4.181 5 C -0.139 4.139 6 H 0.127 0.873 7 C 0.028 3.972 8 N -0.377 5.377 9 C 0.411 3.589 10 O -0.480 6.480 11 N -0.288 5.288 12 C 0.029 3.971 13 C -0.324 4.324 14 C -0.093 4.093 15 N -0.128 5.128 16 C 0.154 3.846 17 C -0.584 4.584 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.197 1.197 25 N -0.179 5.179 26 C 0.027 3.973 27 H 0.104 0.896 28 C -0.225 4.225 29 O -0.314 6.314 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.250 0.750 38 H 0.258 0.742 39 H 0.184 0.816 40 H 0.217 0.783 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.660 14.550 22.508 27.616 hybrid contribution -0.697 -0.339 -0.410 0.877 sum -7.357 14.211 22.098 27.284 Atomic orbital electron populations 1.22223 0.94534 1.02812 1.02898 1.23095 0.94585 0.96607 0.84479 0.88577 1.23404 1.02867 0.93027 0.98809 1.22904 1.00308 0.96020 0.94621 0.87263 1.21368 0.97721 0.99519 0.78566 1.44859 1.26885 1.54272 1.11712 1.15780 0.83487 0.79838 0.79840 1.90846 1.26813 1.55470 1.74830 1.41370 1.26047 1.52404 1.08973 1.19085 0.92611 0.95700 0.89695 1.21686 0.99280 1.09885 1.01559 1.23153 0.97768 1.00911 0.87460 1.48813 1.14930 1.37636 1.11381 1.19331 0.98377 0.93255 0.73674 1.21399 1.02804 1.33348 1.00864 0.92931 1.25755 1.00104 0.96995 0.95481 1.69995 1.33484 1.44856 1.07611 0.85339 0.78753 0.78197 0.78065 1.19753 1.19764 1.19744 1.77242 1.12732 1.17856 1.10031 1.22645 0.96863 0.83977 0.93811 0.89553 1.22238 0.95413 1.02346 1.02531 1.88475 1.85335 1.22244 1.35364 0.92463 0.90135 0.92122 0.87901 0.90585 0.91482 0.91302 0.74963 0.74173 0.81594 0.78317 0.96068 0.92407 0.91865 0.92042 0.90421 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.53 71.98 0.69 -0.71 16 2 C 0.07 0.74 4.19 31.26 0.13 0.87 16 3 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 4 C -0.14 -1.25 6.03 32.05 0.19 -1.06 16 5 C -0.12 -1.13 2.55 -9.53 -0.02 -1.15 16 6 H 0.11 0.74 7.78 -2.39 -0.02 0.72 16 7 C 0.15 2.15 3.82 86.38 0.33 2.48 16 8 N -0.72 -11.57 5.49 -478.52 -2.63 -14.20 16 9 C 0.71 19.10 8.53 179.05 1.53 20.63 16 10 O -0.60 -20.68 13.47 -4.02 -0.05 -20.73 16 11 N -0.64 -18.53 5.46 -321.22 -1.75 -20.28 16 12 C 0.28 11.29 8.11 133.31 1.08 12.37 16 13 C -0.29 -11.53 9.61 22.10 0.21 -11.32 16 14 C 0.06 2.20 11.44 83.52 0.96 3.16 16 15 N -0.35 -16.27 3.67 -351.84 -1.29 -17.56 16 16 C 0.27 14.16 6.26 85.63 0.54 14.69 16 17 C -0.55 -30.78 9.23 25.60 0.24 -30.54 16 18 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 19 C 0.02 0.93 5.46 84.66 0.46 1.40 16 20 N -0.92 -52.13 13.29 21.45 0.28 -51.84 16 21 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 N -0.35 -16.07 12.41 -54.43 -0.68 -16.75 16 26 C 0.08 1.04 4.10 31.06 0.13 1.16 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 C -0.17 -2.16 8.37 71.98 0.60 -1.56 16 29 O -0.39 -6.16 10.70 -148.98 -1.59 -7.75 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.49 7.46 -2.39 -0.02 0.48 16 33 H 0.10 0.55 8.03 -2.39 -0.02 0.53 16 34 H 0.08 0.81 7.93 -2.39 -0.02 0.79 16 35 H 0.07 1.12 6.83 -2.39 -0.02 1.10 16 36 H 0.07 1.09 7.26 -2.39 -0.02 1.08 16 37 H 0.41 3.93 8.49 -92.71 -0.79 3.15 16 38 H 0.42 9.50 8.84 -92.71 -0.82 8.68 16 39 H 0.17 6.39 5.91 -2.91 -0.02 6.37 16 40 H 0.20 6.26 8.06 -2.91 -0.02 6.24 16 41 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 2.94 8.07 -2.39 -0.02 2.92 16 43 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.08 0.94 6.55 -2.39 -0.02 0.93 16 46 H 0.06 0.80 7.57 -2.39 -0.02 0.78 16 Total: -1.00 -72.18 376.31 0.77 -71.41 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -0.60 Total: 21.80 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 7.06 Total: 10.41 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -6.06 Total: -120.63 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.65 Total: -28.48 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -72.18 0.77 -71.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413526672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.689 kcal (2) G-P(sol) polarization free energy of solvation -72.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds