Wall clock time and date at job start Tue Mar 31 2020 14:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 110.33568 * 2 1 4 4 C 1.54804 * 110.31083 * 237.59563 * 2 1 3 5 5 C 1.54507 * 103.91378 * 217.12221 * 4 2 1 6 6 H 1.08997 * 110.51552 * 118.81552 * 5 4 2 7 7 C 1.53003 * 110.50697 * 241.38726 * 5 4 2 8 8 N 1.46507 * 109.46968 * 291.69357 * 7 5 4 9 9 C 1.34775 * 119.99876 * 180.02562 * 8 7 5 10 10 O 1.21593 * 120.00151 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.40203 * 119.99577 * 179.72010 * 11 9 8 13 13 C 1.40398 * 125.97280 * 0.28105 * 12 11 9 14 14 C 1.35239 * 107.86463 * 179.97438 * 13 12 11 15 15 N 1.34959 * 107.86235 * 0.02562 * 14 13 12 16 16 C 1.46508 * 125.97989 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47008 * 124.99650 * 16 15 14 18 18 H 1.08001 * 120.00054 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99901 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00164 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46887 * 90.00583 * 21 19 17 23 23 H 1.48497 * 109.47113 * 210.00347 * 21 19 17 24 24 H 1.48495 * 109.47240 * 330.00391 * 21 19 17 25 25 N 1.31207 * 125.97045 * 179.97438 * 12 11 9 26 26 C 1.54485 * 104.18438 * 0.09394 * 5 4 2 27 27 H 1.08995 * 110.37162 * 264.97240 * 26 5 4 28 28 C 1.53002 * 110.36805 * 142.74441 * 26 5 4 29 29 O 1.44422 * 104.79909 * 23.91648 * 26 5 4 30 30 H 1.09003 * 109.46814 * 299.20205 * 1 2 3 31 31 H 1.08998 * 109.47450 * 59.19819 * 1 2 3 32 32 H 1.08998 * 109.47097 * 179.20624 * 1 2 3 33 33 H 1.08992 * 110.55739 * 98.53100 * 4 2 1 34 34 H 1.08998 * 110.60375 * 335.72815 * 4 2 1 35 35 H 1.08998 * 109.46943 * 171.69663 * 7 5 4 36 36 H 1.08994 * 109.47547 * 51.68956 * 7 5 4 37 37 H 0.97000 * 119.99601 * 359.97438 * 8 7 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 39 39 H 1.08000 * 126.06725 * 0.03146 * 13 12 11 40 40 H 1.08001 * 126.07020 * 179.97438 * 14 13 12 41 41 H 1.08999 * 109.46920 * 245.00071 * 16 15 14 42 42 H 1.08999 * 109.46511 * 5.00221 * 16 15 14 43 43 H 0.97002 * 120.00749 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.47126 * 60.00182 * 28 26 5 45 45 H 1.09002 * 109.46887 * 180.02562 * 28 26 5 46 46 H 1.09002 * 109.47002 * 300.00209 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0673 -0.7780 -1.2257 5 6 3.3177 -1.5065 -0.6844 6 1 3.1979 -2.5864 -0.7707 7 6 4.5713 -1.0462 -1.4310 8 7 4.5159 -1.5194 -2.8165 9 6 5.5207 -1.2318 -3.6675 10 8 6.4729 -0.5792 -3.2856 11 7 5.4698 -1.6675 -4.9419 12 6 6.5123 -1.3634 -5.8287 13 6 7.6652 -0.6226 -5.5233 14 6 8.4215 -0.5521 -6.6422 15 7 7.7760 -1.2204 -7.6210 16 6 8.2434 -1.3921 -8.9989 17 6 8.2809 -2.8601 -9.3374 18 1 7.9858 -3.5920 -8.6001 19 6 8.6911 -3.2687 -10.5887 20 7 9.0501 -2.3775 -11.4866 21 14 8.7370 -5.0884 -11.0085 22 1 7.4277 -5.4984 -11.5766 23 1 9.8093 -5.3396 -12.0046 24 1 9.0105 -5.8735 -9.7781 25 7 6.5835 -1.7260 -7.0877 26 6 3.3873 -1.0863 0.8006 27 1 4.0540 -0.2327 0.9225 28 6 3.8601 -2.2578 1.6638 29 8 2.0328 -0.7225 1.1450 30 1 -0.3633 0.5014 0.8971 31 1 -0.3634 0.5262 -0.8827 32 1 -0.3633 -1.0275 -0.0142 33 1 2.3421 -0.0901 -2.0252 34 1 1.3281 -1.4979 -1.5773 35 1 5.4558 -1.4551 -0.9426 36 1 4.6212 0.0426 -1.4208 37 1 3.7564 -2.0403 -3.1210 38 1 4.7100 -2.1878 -5.2467 39 1 7.9058 -0.1873 -4.5647 40 1 9.3727 -0.0494 -6.7361 41 1 7.5637 -0.8794 -9.6796 42 1 9.2436 -0.9706 -9.0983 43 1 9.3390 -2.6649 -12.3669 44 1 4.8509 -2.5732 1.3371 45 1 3.9035 -1.9458 2.7073 46 1 3.1623 -3.0889 1.5621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413526675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:52 Heat of formation + Delta-G solvation = -0.633015 kcal Electronic energy + Delta-G solvation = -26372.896339 eV Core-core repulsion = 22492.359958 eV Total energy + Delta-G solvation = -3880.536381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80036 -40.31534 -39.39900 -35.68492 -34.63614 -33.40772 -33.18990 -32.44203 -30.83052 -29.40876 -29.24060 -26.97214 -26.23092 -23.68104 -22.92056 -22.08281 -21.55896 -20.83786 -20.34975 -19.78997 -18.07648 -16.94728 -16.57173 -16.38446 -16.31362 -15.95791 -15.62737 -15.35693 -14.80862 -14.46234 -14.29935 -14.06071 -13.80132 -13.65548 -13.49320 -12.94609 -12.79108 -12.72008 -12.35652 -12.31986 -12.23463 -12.20849 -11.84637 -11.74295 -11.29311 -11.11148 -11.07843 -11.02625 -10.89275 -10.42557 -10.25785 -10.17067 -10.07287 -9.69396 -9.49474 -9.27726 -8.63090 -8.09768 -7.41092 -6.23942 -4.28914 2.34991 2.66466 3.11021 3.23667 3.29412 3.34426 3.35959 3.57813 3.83916 4.06744 4.15200 4.26374 4.31604 4.39852 4.53575 4.74444 4.80725 4.88430 4.94342 5.06411 5.11117 5.11931 5.26747 5.31535 5.38149 5.49499 5.55320 5.59436 5.62813 5.69934 5.72767 5.79372 5.81640 6.17766 6.27762 6.48298 6.54425 6.57677 6.87399 7.00817 7.10775 7.49757 7.69972 7.82406 7.97176 8.07336 8.57233 8.66868 8.81375 9.36603 10.84720 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.001968 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.719439 B =14224.585437 C =14383.580218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.132 4.132 6 H 0.093 0.907 7 C 0.150 3.850 8 N -0.744 5.744 9 C 0.713 3.287 10 O -0.567 6.567 11 N -0.643 5.643 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.320 5.320 16 C 0.258 3.742 17 C -0.528 4.528 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.308 5.308 26 C 0.081 3.919 27 H 0.074 0.926 28 C -0.148 4.148 29 O -0.368 6.368 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.397 0.603 38 H 0.406 0.594 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.267 0.733 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.283 3.563 23.342 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.088 0.912 4 C -0.188 4.188 5 C -0.151 4.151 6 H 0.111 0.889 7 C 0.026 3.974 8 N -0.401 5.401 9 C 0.412 3.588 10 O -0.442 6.442 11 N -0.293 5.293 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.141 3.859 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.139 5.139 26 C 0.023 3.977 27 H 0.092 0.908 28 C -0.205 4.205 29 O -0.288 6.288 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.231 0.769 38 H 0.241 0.759 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.972 3.509 22.647 26.841 hybrid contribution -0.176 -1.011 -0.316 1.074 sum -14.148 2.498 22.331 26.553 Atomic orbital electron populations 1.21807 0.93151 1.02914 1.02546 1.23032 0.95352 0.95505 0.84890 0.91212 1.23196 0.97019 0.99970 0.98603 1.22882 0.94749 1.01941 0.95573 0.88914 1.21181 0.96995 0.99570 0.79689 1.44990 1.23494 1.60351 1.11287 1.15611 0.83050 0.80162 0.79977 1.90874 1.33370 1.43520 1.76479 1.41376 1.22655 1.56910 1.08391 1.18782 0.89869 0.99660 0.89584 1.21506 0.96307 1.13009 1.00961 1.22554 0.99364 0.99148 0.88836 1.49055 1.12880 1.36993 1.11307 1.19737 0.95397 0.99063 0.71705 1.21259 1.45379 0.90975 0.98986 0.91315 1.24948 0.94743 0.98703 0.95745 1.69914 1.44170 1.33726 1.05558 0.86324 0.77851 0.84058 0.78237 1.20360 1.20997 1.19741 1.77318 1.05496 1.24082 1.06990 1.22882 0.84977 0.97691 0.92190 0.90789 1.21832 1.01531 0.97098 1.00049 1.89160 1.26877 1.74531 1.38208 0.91866 0.91055 0.91799 0.89867 0.90233 0.91026 0.91164 0.76931 0.75905 0.82210 0.81529 0.93760 0.92532 0.92340 0.90783 0.91688 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.53 37.15 0.35 -0.47 16 2 C 0.07 0.47 3.93 -25.79 -0.10 0.37 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.15 -0.88 6.07 -24.99 -0.15 -1.03 16 5 C -0.13 -0.82 2.70 -89.05 -0.24 -1.06 16 6 H 0.09 0.53 7.87 -51.93 -0.41 0.12 16 7 C 0.15 1.21 4.76 -4.04 -0.02 1.20 16 8 N -0.74 -6.93 5.40 -65.22 -0.35 -7.29 16 9 C 0.71 10.20 8.53 -86.92 -0.74 9.45 16 10 O -0.57 -10.09 13.47 5.28 0.07 -10.02 16 11 N -0.64 -9.85 5.46 -15.51 -0.08 -9.94 16 12 C 0.28 5.54 8.11 -154.36 -1.25 4.29 16 13 C -0.29 -5.74 9.61 -39.84 -0.38 -6.13 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.48 3.67 -62.56 -0.23 -7.71 16 16 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 17 C -0.53 -14.69 9.23 -34.44 -0.32 -15.01 16 18 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.90 -25.32 13.28 55.43 0.74 -24.59 16 21 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 N -0.31 -7.09 12.42 31.44 0.39 -6.70 16 26 C 0.08 0.55 3.48 -25.95 -0.09 0.46 16 27 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 28 C -0.15 -0.88 9.52 37.16 0.35 -0.53 16 29 O -0.37 -3.17 11.04 -35.23 -0.39 -3.56 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.08 0.50 7.71 -51.93 -0.40 0.10 16 34 H 0.08 0.41 7.87 -51.93 -0.41 0.01 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.40 2.62 8.40 -40.82 -0.34 2.28 16 38 H 0.41 4.98 8.84 -40.82 -0.36 4.61 16 39 H 0.16 3.15 5.91 -52.49 -0.31 2.84 16 40 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 41 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -33.52 382.32 -9.29 -42.81 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.25 Total: 4.37 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.92 Total: 0.51 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.46 Total: -56.22 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.32 Total: -13.58 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.52 -9.29 -42.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413526675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.178 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds