Wall clock time and date at job start Tue Mar 31 2020 14:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 110.33568 * 2 1 4 4 C 1.54804 * 110.31083 * 237.59563 * 2 1 3 5 5 C 1.54507 * 103.91378 * 217.12221 * 4 2 1 6 6 H 1.08997 * 110.51552 * 118.81552 * 5 4 2 7 7 C 1.53003 * 110.50697 * 241.38726 * 5 4 2 8 8 N 1.46507 * 109.46968 * 291.69357 * 7 5 4 9 9 C 1.34775 * 119.99876 * 180.02562 * 8 7 5 10 10 O 1.21593 * 120.00151 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.40203 * 119.99577 * 179.72010 * 11 9 8 13 13 C 1.40398 * 125.97280 * 0.28105 * 12 11 9 14 14 C 1.35239 * 107.86463 * 179.97438 * 13 12 11 15 15 N 1.34959 * 107.86235 * 0.02562 * 14 13 12 16 16 C 1.46508 * 125.97989 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47008 * 124.99650 * 16 15 14 18 18 H 1.08001 * 120.00054 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99901 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00164 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46887 * 90.00583 * 21 19 17 23 23 H 1.48497 * 109.47113 * 210.00347 * 21 19 17 24 24 H 1.48495 * 109.47240 * 330.00391 * 21 19 17 25 25 N 1.31207 * 125.97045 * 179.97438 * 12 11 9 26 26 C 1.54485 * 104.18438 * 0.09394 * 5 4 2 27 27 H 1.08995 * 110.37162 * 264.97240 * 26 5 4 28 28 C 1.53002 * 110.36805 * 142.74441 * 26 5 4 29 29 O 1.44422 * 104.79909 * 23.91648 * 26 5 4 30 30 H 1.09003 * 109.46814 * 299.20205 * 1 2 3 31 31 H 1.08998 * 109.47450 * 59.19819 * 1 2 3 32 32 H 1.08998 * 109.47097 * 179.20624 * 1 2 3 33 33 H 1.08992 * 110.55739 * 98.53100 * 4 2 1 34 34 H 1.08998 * 110.60375 * 335.72815 * 4 2 1 35 35 H 1.08998 * 109.46943 * 171.69663 * 7 5 4 36 36 H 1.08994 * 109.47547 * 51.68956 * 7 5 4 37 37 H 0.97000 * 119.99601 * 359.97438 * 8 7 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 39 39 H 1.08000 * 126.06725 * 0.03146 * 13 12 11 40 40 H 1.08001 * 126.07020 * 179.97438 * 14 13 12 41 41 H 1.08999 * 109.46920 * 245.00071 * 16 15 14 42 42 H 1.08999 * 109.46511 * 5.00221 * 16 15 14 43 43 H 0.97002 * 120.00749 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.47126 * 60.00182 * 28 26 5 45 45 H 1.09002 * 109.46887 * 180.02562 * 28 26 5 46 46 H 1.09002 * 109.47002 * 300.00209 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0673 -0.7780 -1.2257 5 6 3.3177 -1.5065 -0.6844 6 1 3.1979 -2.5864 -0.7707 7 6 4.5713 -1.0462 -1.4310 8 7 4.5159 -1.5194 -2.8165 9 6 5.5207 -1.2318 -3.6675 10 8 6.4729 -0.5792 -3.2856 11 7 5.4698 -1.6675 -4.9419 12 6 6.5123 -1.3634 -5.8287 13 6 7.6652 -0.6226 -5.5233 14 6 8.4215 -0.5521 -6.6422 15 7 7.7760 -1.2204 -7.6210 16 6 8.2434 -1.3921 -8.9989 17 6 8.2809 -2.8601 -9.3374 18 1 7.9858 -3.5920 -8.6001 19 6 8.6911 -3.2687 -10.5887 20 7 9.0501 -2.3775 -11.4866 21 14 8.7370 -5.0884 -11.0085 22 1 7.4277 -5.4984 -11.5766 23 1 9.8093 -5.3396 -12.0046 24 1 9.0105 -5.8735 -9.7781 25 7 6.5835 -1.7260 -7.0877 26 6 3.3873 -1.0863 0.8006 27 1 4.0540 -0.2327 0.9225 28 6 3.8601 -2.2578 1.6638 29 8 2.0328 -0.7225 1.1450 30 1 -0.3633 0.5014 0.8971 31 1 -0.3634 0.5262 -0.8827 32 1 -0.3633 -1.0275 -0.0142 33 1 2.3421 -0.0901 -2.0252 34 1 1.3281 -1.4979 -1.5773 35 1 5.4558 -1.4551 -0.9426 36 1 4.6212 0.0426 -1.4208 37 1 3.7564 -2.0403 -3.1210 38 1 4.7100 -2.1878 -5.2467 39 1 7.9058 -0.1873 -4.5647 40 1 9.3727 -0.0494 -6.7361 41 1 7.5637 -0.8794 -9.6796 42 1 9.2436 -0.9706 -9.0983 43 1 9.3390 -2.6649 -12.3669 44 1 4.8509 -2.5732 1.3371 45 1 3.9035 -1.9458 2.7073 46 1 3.1623 -3.0889 1.5621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413526675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:51 Heat of formation + Delta-G solvation = -22.904417 kcal Electronic energy + Delta-G solvation = -26373.862100 eV Core-core repulsion = 22492.359958 eV Total energy + Delta-G solvation = -3881.502142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21538 -41.17386 -40.47249 -36.64452 -36.01872 -35.26267 -33.75648 -33.31153 -32.45342 -30.92271 -29.91795 -28.58522 -27.19061 -25.05072 -24.06394 -22.92162 -22.51969 -21.85771 -21.48784 -21.08677 -19.21041 -18.68137 -18.24422 -17.37082 -17.05280 -16.87243 -16.72039 -16.33210 -16.18569 -15.82523 -15.57317 -15.40100 -14.73969 -14.48177 -14.26795 -14.19978 -14.00314 -13.78649 -13.68408 -13.46336 -13.21017 -12.93199 -12.78992 -12.73603 -12.73116 -12.38747 -12.28424 -12.04807 -11.84301 -11.65432 -11.58931 -11.55499 -11.38325 -11.11831 -10.71494 -10.69883 -10.21812 -9.70931 -9.03966 -8.31836 -6.45965 1.08437 1.14656 1.38867 1.39526 1.51058 1.71694 2.11904 2.36679 2.42439 2.84997 2.99583 3.12742 3.56342 3.68112 3.76297 3.98946 4.04067 4.24196 4.26285 4.29700 4.41042 4.41232 4.51136 4.66287 4.72669 4.76089 4.82446 4.86757 4.92298 4.96384 5.00104 5.04025 5.10752 5.13570 5.16514 5.20054 5.27399 5.32520 5.45657 5.57856 5.77386 5.89008 5.96951 5.99294 6.30640 6.64769 6.77142 7.16297 7.23867 7.43668 8.75537 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.001968 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.719439 B =14224.585437 C =14383.580218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 H 0.069 0.931 4 C -0.146 4.146 5 C -0.120 4.120 6 H 0.104 0.896 7 C 0.151 3.849 8 N -0.720 5.720 9 C 0.712 3.288 10 O -0.602 6.602 11 N -0.636 5.636 12 C 0.285 3.715 13 C -0.293 4.293 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.272 3.728 17 C -0.546 4.546 18 H 0.052 0.948 19 C 0.017 3.983 20 N -0.921 5.921 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.273 1.273 25 N -0.348 5.348 26 C 0.076 3.924 27 H 0.073 0.927 28 C -0.146 4.146 29 O -0.388 6.388 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.414 0.586 38 H 0.421 0.579 39 H 0.167 0.833 40 H 0.200 0.800 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.272 0.728 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.988 2.658 24.181 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.005 3.995 3 H 0.087 0.913 4 C -0.184 4.184 5 C -0.139 4.139 6 H 0.122 0.878 7 C 0.028 3.972 8 N -0.377 5.377 9 C 0.411 3.589 10 O -0.480 6.480 11 N -0.288 5.288 12 C 0.029 3.971 13 C -0.324 4.324 14 C -0.093 4.093 15 N -0.127 5.127 16 C 0.154 3.846 17 C -0.584 4.584 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.198 1.198 24 H -0.198 1.198 25 N -0.179 5.179 26 C 0.018 3.982 27 H 0.091 0.909 28 C -0.204 4.204 29 O -0.308 6.308 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.251 0.749 38 H 0.258 0.742 39 H 0.184 0.816 40 H 0.217 0.783 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.738 2.593 23.524 27.880 hybrid contribution -0.017 -0.654 -0.424 0.780 sum -14.755 1.939 23.099 27.478 Atomic orbital electron populations 1.21811 0.92420 1.03008 1.02987 1.23171 0.96037 0.95475 0.84784 0.91328 1.23183 0.96974 1.00059 0.98160 1.22773 0.93805 1.02507 0.94826 0.87827 1.21258 0.97959 0.99243 0.78775 1.44834 1.22546 1.59307 1.10992 1.15776 0.83526 0.79787 0.79821 1.90845 1.35069 1.45076 1.76970 1.41374 1.22098 1.57099 1.08232 1.19082 0.90684 0.98092 0.89249 1.21683 0.96444 1.13185 1.01101 1.23152 1.00228 0.97923 0.87965 1.48814 1.13904 1.38904 1.11114 1.19335 0.94794 0.97658 0.72849 1.21399 1.45986 0.91893 0.99160 0.92936 1.25747 0.94084 1.03041 0.95440 1.69991 1.44385 1.35593 1.05962 0.85340 0.78253 0.78754 0.78018 1.19766 1.19758 1.19753 1.77238 1.06138 1.26027 1.08460 1.22968 0.84483 0.98054 0.92653 0.90865 1.21836 1.01940 0.96717 0.99867 1.89149 1.27600 1.74821 1.39234 0.92266 0.89792 0.91865 0.89843 0.89106 0.91367 0.91763 0.74933 0.74182 0.81597 0.78291 0.96060 0.92383 0.91860 0.89927 0.91858 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.53 71.98 0.69 -0.75 16 2 C 0.06 0.76 3.93 31.21 0.12 0.88 16 3 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 4 C -0.15 -1.40 6.07 31.72 0.19 -1.21 16 5 C -0.12 -1.23 2.70 -9.78 -0.03 -1.26 16 6 H 0.10 0.89 7.87 -2.39 -0.02 0.87 16 7 C 0.15 2.18 4.76 86.38 0.41 2.59 16 8 N -0.72 -11.83 5.40 -478.52 -2.59 -14.42 16 9 C 0.71 19.24 8.53 179.05 1.53 20.77 16 10 O -0.60 -20.75 13.47 -4.01 -0.05 -20.80 16 11 N -0.64 -18.66 5.46 -321.23 -1.75 -20.42 16 12 C 0.28 11.31 8.11 133.31 1.08 12.39 16 13 C -0.29 -11.54 9.61 22.10 0.21 -11.33 16 14 C 0.06 2.21 11.44 83.52 0.96 3.17 16 15 N -0.35 -16.27 3.67 -351.83 -1.29 -17.56 16 16 C 0.27 14.16 6.26 85.63 0.54 14.70 16 17 C -0.55 -30.82 9.23 25.60 0.24 -30.58 16 18 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 19 C 0.02 0.95 5.46 84.66 0.46 1.41 16 20 N -0.92 -52.13 13.28 21.45 0.28 -51.84 16 21 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 N -0.35 -16.11 12.42 -54.43 -0.68 -16.78 16 26 C 0.08 0.95 3.48 31.10 0.11 1.05 16 27 H 0.07 0.90 7.87 -2.39 -0.02 0.88 16 28 C -0.15 -1.54 9.52 71.98 0.68 -0.86 16 29 O -0.39 -6.24 11.04 -148.98 -1.64 -7.89 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.63 8.12 -2.39 -0.02 0.61 16 33 H 0.08 0.82 7.71 -2.39 -0.02 0.80 16 34 H 0.09 0.70 7.87 -2.39 -0.02 0.68 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.41 4.27 8.40 -92.71 -0.78 3.49 16 38 H 0.42 9.63 8.84 -92.71 -0.82 8.81 16 39 H 0.17 6.39 5.91 -2.91 -0.02 6.37 16 40 H 0.20 6.26 8.06 -2.91 -0.02 6.24 16 41 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 43 H 0.27 14.42 8.31 -92.71 -0.77 13.64 16 44 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -71.92 382.32 0.90 -71.03 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.60 Total: 22.15 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 7.19 Total: 10.98 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -6.02 Total: -121.02 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -1.70 Total: -28.69 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.92 0.90 -71.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413526675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.122 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds