Wall clock time and date at job start Tue Mar 31 2020 14:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70041 * 2 1 4 4 C 1.53616 * 109.74374 * 239.44667 * 2 1 3 5 5 H 1.08997 * 109.66349 * 175.11435 * 4 2 1 6 6 C 1.53007 * 109.43179 * 54.98973 * 4 2 1 7 7 O 1.42902 * 109.47017 * 175.28947 * 6 4 2 8 8 C 1.53038 * 109.24209 * 295.12442 * 4 2 1 9 9 C 1.53042 * 109.53989 * 298.50735 * 8 4 2 10 10 C 1.53191 * 109.30936 * 61.36381 * 9 8 4 11 11 N 1.46923 * 108.77876 * 305.36536 * 10 9 8 12 12 C 1.34775 * 120.63669 * 233.58417 * 11 10 9 13 13 O 1.21586 * 120.00468 * 185.02518 * 12 11 10 14 14 N 1.34773 * 119.99644 * 5.02365 * 12 11 10 15 15 C 1.40199 * 120.00350 * 174.60294 * 14 12 11 16 16 C 1.40406 * 125.96711 * 359.97438 * 15 14 12 17 17 C 1.35240 * 107.86738 * 179.88965 * 16 15 14 18 18 N 1.34966 * 107.85511 * 0.36726 * 17 16 15 19 19 C 1.46501 * 125.97433 * 179.72690 * 18 17 16 20 20 C 1.50702 * 109.47243 * 125.01973 * 19 18 17 21 21 H 1.08005 * 119.99627 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00382 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00126 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00224 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47360 * 89.99565 * 24 22 20 26 26 H 1.48497 * 109.47423 * 210.00313 * 24 22 20 27 27 H 1.48505 * 109.46920 * 329.99816 * 24 22 20 28 28 N 1.31200 * 125.97730 * 180.29788 * 15 14 12 29 29 H 1.08996 * 109.47501 * 299.65554 * 1 2 3 30 30 H 1.09012 * 109.46482 * 59.64922 * 1 2 3 31 31 H 1.08994 * 109.47563 * 179.64570 * 1 2 3 32 32 H 1.08998 * 109.46672 * 295.29016 * 6 4 2 33 33 H 1.08995 * 109.46575 * 55.28625 * 6 4 2 34 34 H 0.96700 * 113.99344 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46006 * 178.48854 * 8 4 2 36 36 H 1.08995 * 109.46400 * 58.52873 * 8 4 2 37 37 H 1.09004 * 109.49563 * 301.41669 * 9 8 4 38 38 H 1.08996 * 109.50232 * 181.31659 * 9 8 4 39 39 H 1.09000 * 109.58636 * 185.57898 * 10 9 8 40 40 H 1.08998 * 109.70306 * 65.22905 * 10 9 8 41 41 H 0.97000 * 120.00071 * 354.87900 * 14 12 11 42 42 H 1.08003 * 126.06637 * 0.02562 * 16 15 14 43 43 H 1.07998 * 126.07099 * 180.13607 * 17 16 15 44 44 H 1.08995 * 109.47778 * 245.02065 * 19 18 17 45 45 H 1.09007 * 109.47363 * 5.02520 * 19 18 17 46 46 H 0.97004 * 120.00300 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0489 -0.7350 -1.2451 5 1 3.1354 -0.6596 -1.2893 6 6 1.4417 -0.1030 -2.4993 7 8 2.0070 -0.7129 -3.6614 8 6 1.6419 -2.2082 -1.1674 9 6 2.2756 -2.8498 0.0692 10 6 1.7641 -2.1398 1.3266 11 7 2.0225 -0.6995 1.1946 12 6 2.6935 -0.0314 2.1537 13 8 2.8217 1.1753 2.0779 14 7 3.2223 -0.7009 3.1970 15 6 4.0157 -0.0247 4.1345 16 6 4.3391 1.3413 4.1086 17 6 5.1175 1.6038 5.1830 18 7 5.2898 0.4497 5.8611 19 6 6.0723 0.2810 7.0881 20 6 5.2066 -0.3380 8.1550 21 1 4.1765 -0.5819 7.9404 22 6 5.7294 -0.5931 9.4050 23 7 6.9835 -0.2958 9.6665 24 14 4.6564 -1.3611 10.7272 25 1 4.7628 -2.8405 10.6537 26 1 5.1095 -0.8980 12.0634 27 1 3.2436 -0.9554 10.5157 28 7 4.5905 -0.5589 5.1860 29 1 -0.3634 0.5084 0.8930 30 1 -0.3633 0.5193 -0.8870 31 1 -0.3634 -1.0276 -0.0064 32 1 0.3625 -0.2560 -2.4970 33 1 1.6572 0.9654 -2.5083 34 1 1.6668 -0.3607 -4.4953 35 1 1.9852 -2.7275 -2.0621 36 1 0.5566 -2.2820 -1.0988 37 1 3.3600 -2.7544 0.0132 38 1 2.0044 -3.9046 0.1112 39 1 2.2862 -2.5259 2.2021 40 1 0.6931 -2.3106 1.4351 41 1 3.0574 -1.6516 3.2971 42 1 4.0209 2.0561 3.3642 43 1 5.5311 2.5654 5.4488 44 1 6.9244 -0.3690 6.8892 45 1 6.4287 1.2534 7.4283 46 1 7.3514 -0.4756 10.5458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413529928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:52 Heat of formation + Delta-G solvation = -15.686234 kcal Electronic energy + Delta-G solvation = -27403.781444 eV Core-core repulsion = 23522.592307 eV Total energy + Delta-G solvation = -3881.189138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.35708 -41.47769 -39.48594 -37.36683 -36.32532 -35.38322 -34.11792 -33.40059 -32.51379 -30.93711 -29.33290 -28.46915 -26.88218 -25.51248 -24.59229 -23.27113 -22.78081 -22.00470 -20.84779 -19.71803 -19.09884 -18.68656 -18.42552 -18.04581 -17.16479 -16.80688 -16.57762 -16.24061 -15.97447 -15.69657 -15.59215 -15.26933 -14.94273 -14.49155 -14.33062 -14.28210 -14.03517 -13.96152 -13.77906 -13.60895 -13.28539 -12.96152 -12.88140 -12.73996 -12.52144 -12.29539 -12.18735 -12.07496 -11.77655 -11.65091 -11.44948 -11.40312 -11.31365 -11.02256 -10.75824 -10.72097 -9.86684 -9.67336 -9.04387 -8.32607 -6.46841 1.02846 1.11124 1.38142 1.38893 1.50390 1.66897 2.00090 2.35188 2.36603 2.78679 2.98819 3.32524 3.64141 3.78747 3.92985 3.98754 4.11981 4.17355 4.23707 4.30089 4.41732 4.47147 4.47291 4.64685 4.69115 4.77183 4.78172 4.87291 4.88853 4.93802 4.99839 5.03758 5.07614 5.10246 5.16234 5.19543 5.34431 5.51245 5.56105 5.57084 5.73041 5.84793 5.95122 6.28770 6.58054 6.67096 6.95550 7.09386 7.22984 7.35782 8.74875 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.002417 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.975704 B =11581.435042 C =11992.537458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.094 4.094 5 H 0.054 0.946 6 C 0.084 3.916 7 O -0.592 6.592 8 C -0.105 4.105 9 C -0.131 4.131 10 C 0.099 3.901 11 N -0.611 5.611 12 C 0.713 3.287 13 O -0.600 6.600 14 N -0.639 5.639 15 C 0.284 3.716 16 C -0.293 4.293 17 C 0.058 3.942 18 N -0.345 5.345 19 C 0.273 3.727 20 C -0.547 4.547 21 H 0.052 0.948 22 C 0.018 3.982 23 N -0.921 5.921 24 Si 0.972 3.028 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.273 1.273 28 N -0.347 5.347 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.398 0.602 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.417 0.583 42 H 0.165 0.835 43 H 0.202 0.798 44 H 0.021 0.979 45 H 0.059 0.941 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.981 -2.630 -25.359 29.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 H 0.099 0.901 4 C -0.114 4.114 5 H 0.072 0.928 6 C 0.006 3.994 7 O -0.401 6.401 8 C -0.143 4.143 9 C -0.170 4.170 10 C -0.023 4.023 11 N -0.348 5.348 12 C 0.414 3.586 13 O -0.478 6.478 14 N -0.292 5.292 15 C 0.028 3.972 16 C -0.324 4.324 17 C -0.091 4.091 18 N -0.127 5.127 19 C 0.154 3.846 20 C -0.585 4.585 21 H 0.070 0.930 22 C -0.183 4.183 23 N -0.559 5.559 24 Si 0.797 3.203 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.198 1.198 28 N -0.178 5.178 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.257 0.743 42 H 0.182 0.818 43 H 0.219 0.781 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.172 -3.201 -24.079 28.123 hybrid contribution -0.316 0.323 0.242 0.512 sum -14.489 -2.878 -23.837 28.043 Atomic orbital electron populations 1.22212 0.92759 1.03688 1.03058 1.21132 0.95385 0.96006 0.81764 0.90104 1.21509 1.00088 0.96938 0.92855 0.92778 1.22201 0.97348 0.95610 0.84264 1.86418 1.70118 1.66231 1.17305 1.21504 1.01573 0.93430 0.97744 1.21919 1.00354 1.00808 0.93882 1.21991 1.02777 0.78245 0.99246 1.47364 1.57581 1.10016 1.19829 1.15707 0.78566 0.84716 0.79594 1.90812 1.65201 1.13270 1.78535 1.41628 1.51102 1.12727 1.23785 1.19102 0.95366 0.92014 0.90706 1.21656 1.10901 0.95495 1.04380 1.23146 0.99784 0.93084 0.93087 1.48829 1.37973 1.04785 1.21087 1.19340 0.89546 0.98480 0.77222 1.21392 0.97874 1.42619 0.96594 0.93008 1.25749 0.96571 0.95560 1.00396 1.69996 1.14419 1.47847 1.23671 0.85337 0.78527 0.78705 0.77774 1.19735 1.19658 1.19780 1.77230 1.17122 1.14853 1.08633 0.93291 0.89092 0.90304 0.90790 0.93212 0.75224 0.91242 0.89700 0.93014 0.88152 0.90320 0.88477 0.74343 0.81762 0.78136 0.96073 0.92322 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.51 71.98 0.61 -1.35 16 2 C 0.16 2.88 2.80 45.12 0.13 3.01 16 3 H 0.08 1.86 7.03 -2.39 -0.02 1.84 16 4 C -0.09 -1.45 2.37 -10.57 -0.03 -1.48 16 5 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 6 C 0.08 0.93 5.79 71.98 0.42 1.34 16 7 O -0.59 -7.43 13.17 -148.98 -1.96 -9.39 16 8 C -0.11 -1.28 4.87 30.62 0.15 -1.13 16 9 C -0.13 -1.68 6.08 30.67 0.19 -1.49 16 10 C 0.10 1.48 6.01 86.36 0.52 2.00 16 11 N -0.61 -13.25 2.68 -812.09 -2.17 -15.42 16 12 C 0.71 22.25 8.26 179.06 1.48 23.73 16 13 O -0.60 -22.58 12.93 -3.99 -0.05 -22.63 16 14 N -0.64 -21.10 5.36 -321.24 -1.72 -22.83 16 15 C 0.28 11.93 8.11 133.32 1.08 13.01 16 16 C -0.29 -12.10 9.61 22.11 0.21 -11.88 16 17 C 0.06 2.36 11.44 83.52 0.96 3.31 16 18 N -0.34 -16.67 3.67 -351.84 -1.29 -17.96 16 19 C 0.27 14.42 6.26 85.63 0.54 14.96 16 20 C -0.55 -31.26 9.24 25.60 0.24 -31.03 16 21 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 22 C 0.02 0.98 5.46 84.65 0.46 1.44 16 23 N -0.92 -52.61 13.29 21.44 0.28 -52.32 16 24 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 28 N -0.35 -16.69 12.42 -54.43 -0.68 -17.36 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.73 6.55 -2.38 -0.02 0.71 16 31 H 0.08 0.72 5.71 -2.39 -0.01 0.71 16 32 H 0.07 0.49 6.69 -2.39 -0.02 0.47 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.40 1.35 9.12 -74.06 -0.68 0.68 16 35 H 0.07 0.95 7.79 -2.39 -0.02 0.93 16 36 H 0.08 0.73 6.49 -2.39 -0.02 0.72 16 37 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.18 5.57 -2.39 -0.01 1.17 16 40 H 0.10 1.04 7.49 -2.39 -0.02 1.02 16 41 H 0.42 11.42 6.28 -92.71 -0.58 10.84 16 42 H 0.17 6.65 5.93 -2.91 -0.02 6.64 16 43 H 0.20 6.51 8.06 -2.91 -0.02 6.49 16 44 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 3.02 8.07 -2.38 -0.02 3.00 16 46 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -75.09 364.91 1.15 -73.94 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.23 Total: 23.53 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.95 Total: 14.45 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -5.58 Total: -125.89 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -2.01 Total: -32.03 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -75.09 1.15 -73.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413529928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.258 kcal (2) G-P(sol) polarization free energy of solvation -75.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds