Wall clock time and date at job start Tue Mar 31 2020 14:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.58358 * 2 1 4 4 C 1.53192 * 109.70098 * 120.35265 * 2 1 3 5 5 H 1.09006 * 109.49828 * 185.20660 * 4 2 1 6 6 C 1.52996 * 109.49819 * 305.26784 * 4 2 1 7 7 O 1.42906 * 109.47026 * 185.00143 * 6 4 2 8 8 C 1.53034 * 109.31583 * 65.22566 * 4 2 1 9 9 C 1.53039 * 109.53954 * 61.36030 * 8 4 2 10 10 C 1.53627 * 109.24113 * 298.51423 * 9 8 4 11 11 N 1.46920 * 109.58694 * 239.71393 * 2 1 3 12 12 C 1.34776 * 120.63386 * 113.65552 * 11 2 1 13 13 O 1.21598 * 119.99883 * 5.22772 * 12 11 2 14 14 N 1.34768 * 120.00360 * 185.22914 * 12 11 2 15 15 C 1.40194 * 120.00293 * 175.14363 * 14 12 11 16 16 C 1.40400 * 125.97006 * 359.72308 * 15 14 12 17 17 C 1.35251 * 107.86978 * 180.02562 * 16 15 14 18 18 N 1.34969 * 107.85228 * 359.97438 * 17 16 15 19 19 C 1.46500 * 125.97018 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47222 * 124.99973 * 19 18 17 21 21 H 1.08000 * 119.99444 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00398 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99439 * 0.02562 * 22 20 19 24 24 Si 1.86788 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47290 * 90.00039 * 24 22 20 26 26 H 1.48507 * 109.47501 * 209.99845 * 24 22 20 27 27 H 1.48503 * 109.47470 * 330.00041 * 24 22 20 28 28 N 1.31209 * 125.97502 * 179.41717 * 15 14 12 29 29 H 1.09000 * 109.47070 * 180.28786 * 1 2 3 30 30 H 1.09011 * 109.47038 * 300.28743 * 1 2 3 31 31 H 1.08998 * 109.47122 * 60.28404 * 1 2 3 32 32 H 1.08998 * 109.47285 * 304.99876 * 6 4 2 33 33 H 1.09001 * 109.47160 * 65.00416 * 6 4 2 34 34 H 0.96701 * 113.99915 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46391 * 181.38550 * 8 4 2 36 36 H 1.09005 * 109.45804 * 301.35298 * 8 4 2 37 37 H 1.08998 * 109.49559 * 58.58858 * 9 8 4 38 38 H 1.09004 * 109.49859 * 178.65437 * 9 8 4 39 39 H 1.09003 * 109.73812 * 295.11827 * 10 9 8 40 40 H 1.08999 * 109.66248 * 174.55383 * 10 9 8 41 41 H 0.96999 * 120.00312 * 354.86208 * 14 12 11 42 42 H 1.07999 * 126.06656 * 0.02562 * 16 15 14 43 43 H 1.07999 * 126.07188 * 180.02562 * 17 16 15 44 44 H 1.09004 * 109.46876 * 244.99514 * 19 18 17 45 45 H 1.08999 * 109.47422 * 4.99727 * 19 18 17 46 46 H 0.97005 * 119.99805 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7288 1.2446 5 1 3.1325 -0.6471 1.2896 6 6 1.4346 -0.0975 2.4967 7 8 2.0044 -0.6996 3.6607 8 6 1.6473 -2.2043 1.1692 9 6 2.2857 -2.8448 -0.0653 10 6 1.7670 -2.1389 -1.3274 11 7 2.0225 -0.6981 -1.1953 12 6 2.6911 -0.0284 -2.1550 13 8 2.9750 1.1429 -1.9937 14 7 3.0450 -0.6570 -3.2934 15 6 3.6494 0.0634 -4.3331 16 6 3.9383 1.4374 -4.3252 17 6 4.5167 1.7467 -5.5080 18 7 4.5935 0.6151 -6.2395 19 6 5.1539 0.4986 -7.5881 20 6 6.2251 -0.5614 -7.5971 21 1 6.4648 -1.0946 -6.6890 22 6 6.8992 -0.8504 -8.7646 23 7 6.6076 -0.2007 -9.8703 24 14 8.2274 -2.1638 -8.7756 25 1 7.6189 -3.4806 -9.0932 26 1 9.2464 -1.8288 -9.8027 27 1 8.8730 -2.2262 -7.4397 28 7 4.0491 -0.4295 -5.4816 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3634 0.5183 0.8875 31 1 -0.3633 0.5094 -0.8925 32 1 1.6421 0.9725 2.5026 33 1 0.3565 -0.2586 2.4951 34 1 1.6617 -0.3473 4.4936 35 1 1.9923 -2.7200 2.0654 36 1 0.5624 -2.2838 1.0995 37 1 3.3695 -2.7436 -0.0083 38 1 2.0205 -3.9013 -0.1053 39 1 0.6959 -2.3120 -1.4321 40 1 2.2888 -2.5238 -2.2036 41 1 2.8853 -1.6087 -3.3918 42 1 3.7348 2.1252 -3.5178 43 1 4.8574 2.7253 -5.8126 44 1 4.3643 0.2230 -8.2871 45 1 5.5857 1.4541 -7.8859 46 1 7.0821 -0.4038 -10.6917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413529930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:56 Heat of formation + Delta-G solvation = 7.774211 kcal Electronic energy + Delta-G solvation = -27398.920692 eV Core-core repulsion = 23518.748876 eV Total energy + Delta-G solvation = -3880.171816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04462 -40.14974 -38.51055 -36.70841 -34.86863 -33.63108 -32.95448 -32.66942 -30.77088 -29.25592 -28.55694 -26.61314 -26.24758 -24.37570 -22.95329 -22.57651 -21.49770 -20.45587 -19.51748 -18.76592 -18.03489 -17.85118 -16.59346 -16.50629 -15.87795 -15.77527 -15.45365 -15.03137 -14.92553 -14.45867 -14.27332 -14.14518 -13.82924 -13.56096 -13.36809 -13.21533 -12.74982 -12.69567 -12.33356 -12.30261 -12.21146 -11.86831 -11.75202 -11.51638 -11.09462 -11.01475 -10.87787 -10.80753 -10.69447 -10.39192 -10.24528 -10.23431 -10.02145 -9.63491 -9.45790 -8.84015 -8.61230 -8.06746 -7.37802 -6.22427 -4.27247 2.29982 2.68033 3.11715 3.25012 3.30671 3.34969 3.41169 3.81281 3.88938 4.07611 4.31223 4.36143 4.45980 4.58774 4.76520 4.79189 4.91321 4.99256 5.02522 5.12556 5.13101 5.26798 5.30188 5.37594 5.48071 5.50514 5.62397 5.70584 5.74192 5.78965 5.85338 5.95985 6.12691 6.19584 6.37824 6.57273 6.67638 6.86005 7.00160 7.11422 7.24313 7.52380 7.71498 7.82193 7.96866 8.09606 8.59483 8.69247 8.83305 9.38208 10.86240 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.002470 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.682955 B =11332.244375 C =11929.444026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.163 3.837 3 H 0.105 0.895 4 C -0.098 4.098 5 H 0.083 0.917 6 C 0.082 3.918 7 O -0.573 6.573 8 C -0.110 4.110 9 C -0.136 4.136 10 C 0.106 3.894 11 N -0.621 5.621 12 C 0.718 3.282 13 O -0.566 6.566 14 N -0.644 5.644 15 C 0.275 3.725 16 C -0.286 4.286 17 C 0.051 3.949 18 N -0.321 5.321 19 C 0.259 3.741 20 C -0.527 4.527 21 H 0.069 0.931 22 C 0.061 3.939 23 N -0.896 5.896 24 Si 0.908 3.092 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 N -0.308 5.308 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.379 0.621 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.405 0.595 42 H 0.160 0.840 43 H 0.167 0.833 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 -1.548 23.645 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.059 3.941 3 H 0.123 0.877 4 C -0.117 4.117 5 H 0.102 0.898 6 C 0.003 3.997 7 O -0.378 6.378 8 C -0.148 4.148 9 C -0.174 4.174 10 C -0.017 4.017 11 N -0.359 5.359 12 C 0.419 3.581 13 O -0.442 6.442 14 N -0.296 5.296 15 C 0.021 3.979 16 C -0.317 4.317 17 C -0.099 4.099 18 N -0.103 5.103 19 C 0.141 3.859 20 C -0.566 4.566 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.139 5.139 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.226 0.774 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.243 0.757 42 H 0.177 0.823 43 H 0.185 0.815 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.377 -2.061 22.233 26.029 hybrid contribution 0.313 -0.235 0.593 0.711 sum -13.064 -2.296 22.827 26.401 Atomic orbital electron populations 1.22265 0.95068 1.02552 1.02641 1.20883 0.93626 0.97334 0.82216 0.87705 1.21499 1.01840 0.95912 0.92456 0.89845 1.22226 0.96300 0.95962 0.85167 1.86474 1.68964 1.66185 1.16157 1.21523 1.00488 0.94622 0.98149 1.22008 1.01440 0.99583 0.94355 1.21794 1.01160 0.80169 0.98572 1.47219 1.59313 1.08722 1.20664 1.15497 0.78532 0.84603 0.79422 1.90852 1.59377 1.14836 1.79121 1.41597 1.62707 1.11896 1.13367 1.18804 0.99119 0.91087 0.88864 1.21493 1.14691 0.94865 1.00679 1.22550 1.01493 0.93232 0.92634 1.49051 1.43234 1.03151 1.14836 1.19728 0.94143 0.99438 0.72564 1.21264 1.18543 1.20277 0.96467 0.91321 1.24947 0.97468 0.96706 0.95017 1.69923 1.42010 1.41301 1.00174 0.86326 0.80844 0.81386 0.77928 1.20365 1.20998 1.19724 1.77314 1.20892 1.12546 1.03174 0.91920 0.91303 0.91856 0.93306 0.93111 0.77433 0.90896 0.91662 0.91179 0.90477 0.90914 0.90268 0.75738 0.82267 0.81541 0.93777 0.92554 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 8.51 37.16 0.32 -0.90 16 2 C 0.16 1.55 2.80 -67.60 -0.19 1.36 16 3 H 0.10 1.19 7.00 -51.93 -0.36 0.83 16 4 C -0.10 -0.82 2.36 -90.50 -0.21 -1.03 16 5 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 6 C 0.08 0.54 5.76 37.16 0.21 0.75 16 7 O -0.57 -4.16 13.18 -35.23 -0.46 -4.63 16 8 C -0.11 -0.81 4.87 -26.69 -0.13 -0.94 16 9 C -0.14 -1.01 6.10 -26.39 -0.16 -1.18 16 10 C 0.11 0.89 6.01 -3.48 -0.02 0.87 16 11 N -0.62 -6.97 2.67 -170.65 -0.46 -7.43 16 12 C 0.72 11.18 8.26 -86.93 -0.72 10.46 16 13 O -0.57 -10.50 12.91 5.28 0.07 -10.44 16 14 N -0.64 -10.58 5.36 -15.51 -0.08 -10.66 16 15 C 0.28 5.71 8.11 -154.36 -1.25 4.46 16 16 C -0.29 -5.86 9.61 -39.83 -0.38 -6.24 16 17 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 18 N -0.32 -7.60 3.67 -62.56 -0.23 -7.83 16 19 C 0.26 6.65 6.26 -5.19 -0.03 6.62 16 20 C -0.53 -14.81 9.23 -34.44 -0.32 -15.13 16 21 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.90 -25.50 13.29 55.43 0.74 -24.77 16 24 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 N -0.31 -7.23 12.42 31.44 0.39 -6.84 16 29 H 0.06 0.40 5.73 -51.93 -0.30 0.10 16 30 H 0.07 0.38 6.53 -51.92 -0.34 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.26 6.69 -51.93 -0.35 -0.09 16 34 H 0.38 1.06 9.12 45.56 0.42 1.48 16 35 H 0.07 0.58 7.79 -51.93 -0.40 0.18 16 36 H 0.06 0.41 6.50 -51.93 -0.34 0.08 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.50 7.48 -51.93 -0.39 0.12 16 40 H 0.08 0.65 5.64 -51.93 -0.29 0.36 16 41 H 0.41 5.57 6.31 -40.82 -0.26 5.32 16 42 H 0.16 3.20 5.93 -52.49 -0.31 2.89 16 43 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 44 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 46 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -34.25 364.94 -8.59 -42.84 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.85 Total: 6.18 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -3.18 Total: 1.56 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.36 Total: -57.53 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.40 Total: -15.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.25 -8.59 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413529930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.615 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds