Wall clock time and date at job start Tue Mar 31 2020 14:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.58358 * 2 1 4 4 C 1.53192 * 109.70098 * 120.35265 * 2 1 3 5 5 H 1.09006 * 109.49828 * 185.20660 * 4 2 1 6 6 C 1.52996 * 109.49819 * 305.26784 * 4 2 1 7 7 O 1.42906 * 109.47026 * 185.00143 * 6 4 2 8 8 C 1.53034 * 109.31583 * 65.22566 * 4 2 1 9 9 C 1.53039 * 109.53954 * 61.36030 * 8 4 2 10 10 C 1.53627 * 109.24113 * 298.51423 * 9 8 4 11 11 N 1.46920 * 109.58694 * 239.71393 * 2 1 3 12 12 C 1.34776 * 120.63386 * 113.65552 * 11 2 1 13 13 O 1.21598 * 119.99883 * 5.22772 * 12 11 2 14 14 N 1.34768 * 120.00360 * 185.22914 * 12 11 2 15 15 C 1.40194 * 120.00293 * 175.14363 * 14 12 11 16 16 C 1.40400 * 125.97006 * 359.72308 * 15 14 12 17 17 C 1.35251 * 107.86978 * 180.02562 * 16 15 14 18 18 N 1.34969 * 107.85228 * 359.97438 * 17 16 15 19 19 C 1.46500 * 125.97018 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47222 * 124.99973 * 19 18 17 21 21 H 1.08000 * 119.99444 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00398 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99439 * 0.02562 * 22 20 19 24 24 Si 1.86788 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47290 * 90.00039 * 24 22 20 26 26 H 1.48507 * 109.47501 * 209.99845 * 24 22 20 27 27 H 1.48503 * 109.47470 * 330.00041 * 24 22 20 28 28 N 1.31209 * 125.97502 * 179.41717 * 15 14 12 29 29 H 1.09000 * 109.47070 * 180.28786 * 1 2 3 30 30 H 1.09011 * 109.47038 * 300.28743 * 1 2 3 31 31 H 1.08998 * 109.47122 * 60.28404 * 1 2 3 32 32 H 1.08998 * 109.47285 * 304.99876 * 6 4 2 33 33 H 1.09001 * 109.47160 * 65.00416 * 6 4 2 34 34 H 0.96701 * 113.99915 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46391 * 181.38550 * 8 4 2 36 36 H 1.09005 * 109.45804 * 301.35298 * 8 4 2 37 37 H 1.08998 * 109.49559 * 58.58858 * 9 8 4 38 38 H 1.09004 * 109.49859 * 178.65437 * 9 8 4 39 39 H 1.09003 * 109.73812 * 295.11827 * 10 9 8 40 40 H 1.08999 * 109.66248 * 174.55383 * 10 9 8 41 41 H 0.96999 * 120.00312 * 354.86208 * 14 12 11 42 42 H 1.07999 * 126.06656 * 0.02562 * 16 15 14 43 43 H 1.07999 * 126.07188 * 180.02562 * 17 16 15 44 44 H 1.09004 * 109.46876 * 244.99514 * 19 18 17 45 45 H 1.08999 * 109.47422 * 4.99727 * 19 18 17 46 46 H 0.97005 * 119.99805 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7288 1.2446 5 1 3.1325 -0.6471 1.2896 6 6 1.4346 -0.0975 2.4967 7 8 2.0044 -0.6996 3.6607 8 6 1.6473 -2.2043 1.1692 9 6 2.2857 -2.8448 -0.0653 10 6 1.7670 -2.1389 -1.3274 11 7 2.0225 -0.6981 -1.1953 12 6 2.6911 -0.0284 -2.1550 13 8 2.9750 1.1429 -1.9937 14 7 3.0450 -0.6570 -3.2934 15 6 3.6494 0.0634 -4.3331 16 6 3.9383 1.4374 -4.3252 17 6 4.5167 1.7467 -5.5080 18 7 4.5935 0.6151 -6.2395 19 6 5.1539 0.4986 -7.5881 20 6 6.2251 -0.5614 -7.5971 21 1 6.4648 -1.0946 -6.6890 22 6 6.8992 -0.8504 -8.7646 23 7 6.6076 -0.2007 -9.8703 24 14 8.2274 -2.1638 -8.7756 25 1 7.6189 -3.4806 -9.0932 26 1 9.2464 -1.8288 -9.8027 27 1 8.8730 -2.2262 -7.4397 28 7 4.0491 -0.4295 -5.4816 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3634 0.5183 0.8875 31 1 -0.3633 0.5094 -0.8925 32 1 1.6421 0.9725 2.5026 33 1 0.3565 -0.2586 2.4951 34 1 1.6617 -0.3473 4.4936 35 1 1.9923 -2.7200 2.0654 36 1 0.5624 -2.2838 1.0995 37 1 3.3695 -2.7436 -0.0083 38 1 2.0205 -3.9013 -0.1053 39 1 0.6959 -2.3120 -1.4321 40 1 2.2888 -2.5238 -2.2036 41 1 2.8853 -1.6087 -3.3918 42 1 3.7348 2.1252 -3.5178 43 1 4.8574 2.7253 -5.8126 44 1 4.3643 0.2230 -8.2871 45 1 5.5857 1.4541 -7.8859 46 1 7.0821 -0.4038 -10.6917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413529930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:55 Heat of formation + Delta-G solvation = -15.987027 kcal Electronic energy + Delta-G solvation = -27399.951057 eV Core-core repulsion = 23518.748876 eV Total energy + Delta-G solvation = -3881.202181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.35482 -41.47875 -39.49329 -37.36409 -36.31982 -35.38394 -34.12711 -33.39698 -32.51383 -30.93408 -29.31976 -28.46704 -26.87997 -25.51878 -24.59839 -23.26962 -22.77710 -22.00588 -20.85070 -19.71834 -19.09277 -18.68280 -18.43407 -18.04356 -17.16848 -16.85381 -16.55241 -16.20491 -16.02153 -15.65735 -15.61521 -15.19969 -14.96843 -14.54348 -14.31834 -14.25621 -14.05635 -13.92637 -13.75467 -13.65555 -13.29282 -12.94436 -12.89264 -12.74259 -12.52242 -12.29955 -12.18547 -12.07371 -11.80478 -11.63351 -11.44899 -11.40382 -11.31690 -11.01496 -10.75766 -10.72178 -9.86650 -9.67273 -9.04306 -8.32854 -6.46919 1.03300 1.10774 1.37922 1.38519 1.50135 1.66854 2.00353 2.34862 2.36738 2.79291 2.98609 3.32399 3.63927 3.79776 3.91998 3.98882 4.12397 4.17151 4.23745 4.30302 4.41884 4.46878 4.47670 4.64399 4.68691 4.77197 4.78290 4.87246 4.88716 4.93999 4.99729 5.03761 5.07645 5.10253 5.16053 5.19336 5.34368 5.51566 5.55860 5.57002 5.73137 5.84829 5.95243 6.28818 6.58123 6.67094 6.95630 7.09524 7.22858 7.35876 8.74616 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.002470 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.682955 B =11332.244375 C =11929.444026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.095 4.095 5 H 0.052 0.948 6 C 0.084 3.916 7 O -0.592 6.592 8 C -0.105 4.105 9 C -0.132 4.132 10 C 0.099 3.901 11 N -0.611 5.611 12 C 0.713 3.287 13 O -0.601 6.601 14 N -0.638 5.638 15 C 0.283 3.717 16 C -0.293 4.293 17 C 0.057 3.943 18 N -0.345 5.345 19 C 0.273 3.727 20 C -0.547 4.547 21 H 0.051 0.949 22 C 0.018 3.982 23 N -0.920 5.920 24 Si 0.972 3.028 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.274 1.274 28 N -0.347 5.347 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.398 0.602 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.417 0.583 42 H 0.165 0.835 43 H 0.202 0.798 44 H 0.022 0.978 45 H 0.059 0.941 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.180 -2.617 25.247 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.099 0.901 4 C -0.114 4.114 5 H 0.071 0.929 6 C 0.006 3.994 7 O -0.401 6.401 8 C -0.142 4.142 9 C -0.170 4.170 10 C -0.023 4.023 11 N -0.348 5.348 12 C 0.414 3.586 13 O -0.479 6.479 14 N -0.292 5.292 15 C 0.028 3.972 16 C -0.324 4.324 17 C -0.091 4.091 18 N -0.127 5.127 19 C 0.154 3.846 20 C -0.585 4.585 21 H 0.069 0.931 22 C -0.182 4.182 23 N -0.559 5.559 24 Si 0.796 3.204 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.199 1.199 28 N -0.178 5.178 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.257 0.743 42 H 0.182 0.818 43 H 0.219 0.781 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.499 -3.155 23.896 28.128 hybrid contribution 0.580 0.121 0.246 0.641 sum -13.919 -3.034 24.141 28.031 Atomic orbital electron populations 1.22226 0.92642 1.03750 1.03114 1.21039 0.95349 0.96112 0.81851 0.90116 1.21425 1.00053 0.96988 0.92951 0.92950 1.22205 0.97287 0.95692 0.84212 1.86420 1.69692 1.66699 1.17292 1.21502 1.01612 0.93386 0.97730 1.21996 1.00223 1.00852 0.93915 1.22087 1.02837 0.78168 0.99171 1.47354 1.57637 1.09956 1.19829 1.15709 0.78725 0.84422 0.79735 1.90814 1.60805 1.16448 1.79833 1.41620 1.62387 1.12392 1.12788 1.19102 0.97660 0.91609 0.88830 1.21658 1.14907 0.95009 1.00842 1.23151 1.00160 0.93750 0.92050 1.48831 1.44879 1.04240 1.14711 1.19340 0.92873 0.98812 0.73554 1.21393 1.19739 1.21219 0.96165 0.93075 1.25738 0.99385 0.98608 0.94491 1.69997 1.42882 1.42319 1.00682 0.85347 0.78278 0.78791 0.77988 1.19718 1.19632 1.19861 1.77234 1.22787 1.13400 1.04400 0.90273 0.89052 0.93200 0.93230 0.90713 0.75222 0.91284 0.89610 0.93152 0.88150 0.88329 0.90305 0.74341 0.81767 0.78137 0.95983 0.92324 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.51 71.98 0.61 -1.29 16 2 C 0.16 2.88 2.80 44.98 0.13 3.00 16 3 H 0.08 1.86 7.00 -2.39 -0.02 1.85 16 4 C -0.09 -1.48 2.36 -10.72 -0.03 -1.51 16 5 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 6 C 0.08 0.94 5.76 71.98 0.41 1.36 16 7 O -0.59 -7.56 13.18 -148.98 -1.96 -9.52 16 8 C -0.10 -1.29 4.87 30.62 0.15 -1.14 16 9 C -0.13 -1.71 6.10 30.82 0.19 -1.53 16 10 C 0.10 1.47 6.01 86.51 0.52 1.99 16 11 N -0.61 -13.25 2.67 -812.06 -2.17 -15.42 16 12 C 0.71 22.26 8.26 179.06 1.48 23.74 16 13 O -0.60 -22.69 12.91 -4.02 -0.05 -22.74 16 14 N -0.64 -21.04 5.36 -321.24 -1.72 -22.77 16 15 C 0.28 11.90 8.11 133.31 1.08 12.98 16 16 C -0.29 -12.07 9.61 22.11 0.21 -11.86 16 17 C 0.06 2.35 11.44 83.52 0.96 3.31 16 18 N -0.34 -16.63 3.67 -351.83 -1.29 -17.92 16 19 C 0.27 14.40 6.26 85.63 0.54 14.93 16 20 C -0.55 -31.32 9.23 25.60 0.24 -31.09 16 21 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 22 C 0.02 1.01 5.46 84.65 0.46 1.47 16 23 N -0.92 -52.53 13.29 21.45 0.28 -52.25 16 24 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 28 N -0.35 -16.65 12.42 -54.44 -0.68 -17.32 16 29 H 0.08 0.70 5.73 -2.39 -0.01 0.69 16 30 H 0.09 0.70 6.53 -2.38 -0.02 0.69 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.49 6.69 -2.39 -0.02 0.48 16 34 H 0.40 1.41 9.12 -74.06 -0.68 0.73 16 35 H 0.07 0.95 7.79 -2.39 -0.02 0.94 16 36 H 0.09 0.74 6.50 -2.38 -0.02 0.72 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 1.03 7.48 -2.39 -0.02 1.01 16 40 H 0.08 1.19 5.64 -2.39 -0.01 1.17 16 41 H 0.42 11.38 6.31 -92.71 -0.59 10.80 16 42 H 0.17 6.65 5.93 -2.91 -0.02 6.63 16 43 H 0.20 6.50 8.06 -2.91 -0.02 6.47 16 44 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 46 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -75.27 364.94 1.15 -74.13 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.24 Total: 23.32 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 6.95 Total: 14.38 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -5.58 Total: -125.69 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -2.02 Total: -32.26 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -75.27 1.15 -74.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413529930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.138 kcal (2) G-P(sol) polarization free energy of solvation -75.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds