Wall clock time and date at job start Tue Mar 31 2020 14:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.58620 * 2 1 4 4 C 1.53186 * 109.70451 * 120.35340 * 2 1 3 5 5 H 1.09001 * 109.49905 * 54.53998 * 4 2 1 6 6 C 1.53001 * 109.49885 * 294.44843 * 4 2 1 7 7 O 1.42905 * 109.47271 * 175.00157 * 6 4 2 8 8 C 1.53040 * 109.31457 * 174.49438 * 4 2 1 9 9 C 1.53039 * 109.53952 * 298.63508 * 8 4 2 10 10 C 1.53186 * 109.31055 * 61.36172 * 9 8 4 11 11 N 1.46925 * 108.77873 * 305.36639 * 10 9 8 12 12 C 1.34773 * 120.63092 * 233.62701 * 11 10 9 13 13 O 1.21594 * 120.00073 * 185.82239 * 12 11 10 14 14 N 1.34774 * 120.00328 * 5.82460 * 12 11 10 15 15 C 1.40192 * 120.00241 * 185.28931 * 14 12 11 16 16 C 1.40398 * 125.97454 * 0.02562 * 15 14 12 17 17 C 1.35243 * 107.86991 * 179.97438 * 16 15 14 18 18 N 1.34960 * 107.85902 * 0.02562 * 17 16 15 19 19 C 1.46503 * 125.97675 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47129 * 124.99836 * 19 18 17 21 21 H 1.08007 * 119.99444 * 0.02562 * 20 19 18 22 22 C 1.37866 * 120.00233 * 179.97438 * 20 19 18 23 23 N 1.31521 * 120.00088 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00281 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47015 * 90.00200 * 24 22 20 26 26 H 1.48504 * 109.47263 * 210.00125 * 24 22 20 27 27 H 1.48502 * 109.47187 * 329.99821 * 24 22 20 28 28 N 1.31214 * 125.97047 * 179.69294 * 15 14 12 29 29 H 1.09000 * 109.46753 * 174.48121 * 1 2 3 30 30 H 1.08998 * 109.47300 * 294.48346 * 1 2 3 31 31 H 1.08999 * 109.47262 * 54.48710 * 1 2 3 32 32 H 1.09006 * 109.46942 * 294.99739 * 6 4 2 33 33 H 1.08996 * 109.47245 * 54.99347 * 6 4 2 34 34 H 0.96699 * 113.99799 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46151 * 178.61337 * 8 4 2 36 36 H 1.08997 * 109.44844 * 58.64922 * 8 4 2 37 37 H 1.09004 * 109.49644 * 301.41600 * 9 8 4 38 38 H 1.09002 * 109.52581 * 181.33287 * 9 8 4 39 39 H 1.08997 * 109.58841 * 185.57620 * 10 9 8 40 40 H 1.09002 * 109.70325 * 65.22592 * 10 9 8 41 41 H 0.97005 * 119.99699 * 5.29477 * 14 12 11 42 42 H 1.08004 * 126.06539 * 359.97438 * 16 15 14 43 43 H 1.08004 * 126.06963 * 179.97438 * 17 16 15 44 44 H 1.08996 * 109.46854 * 244.99562 * 19 18 17 45 45 H 1.08993 * 109.46923 * 5.00144 * 19 18 17 46 46 H 0.96994 * 120.00527 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2445 5 1 1.6080 -1.7256 1.2906 6 6 1.6567 0.0595 2.4965 7 8 2.0359 -0.6774 3.6607 8 6 3.5706 -0.8442 1.1674 9 6 3.9603 -1.6607 -0.0670 10 6 3.4655 -0.9425 -1.3263 11 7 2.0226 -0.6981 -1.1953 12 6 1.1672 -1.1068 -2.1532 13 8 -0.0093 -0.8069 -2.0860 14 7 1.6156 -1.8480 -3.1856 15 6 0.7511 -2.1796 -4.2382 16 6 -0.5986 -1.8078 -4.3452 17 6 -1.0801 -2.3211 -5.5001 18 7 -0.0776 -2.9931 -6.1041 19 6 -0.1657 -3.7046 -7.3818 20 6 0.8997 -3.1923 -8.3165 21 1 1.5751 -2.4149 -7.9911 22 6 1.0129 -3.7169 -9.5865 23 7 0.1907 -4.6640 -9.9824 24 14 2.3339 -3.0824 -10.7448 25 1 3.5711 -3.8853 -10.5718 26 1 1.8601 -3.1993 -12.1474 27 1 2.6205 -1.6584 -10.4363 28 7 1.0635 -2.8865 -5.2986 29 1 -0.3633 -1.0229 -0.0988 30 1 -0.3634 0.4259 0.9352 31 1 -0.3634 0.5969 -0.8365 32 1 2.1679 1.0223 2.4935 33 1 0.5788 0.2206 2.5035 34 1 1.8183 -0.2365 4.4934 35 1 3.9430 -1.3406 2.0635 36 1 4.0069 0.1521 1.0964 37 1 3.5037 -2.6488 -0.0086 38 1 5.0447 -1.7628 -0.1087 39 1 3.6525 -1.5665 -2.2002 40 1 3.9884 0.0075 -1.4370 41 1 2.5367 -2.1521 -3.2003 42 1 -1.1538 -1.2169 -3.6318 43 1 -2.0881 -2.2130 -5.8725 44 1 -0.0195 -4.7716 -7.2142 45 1 -1.1478 -3.5373 -7.8238 46 1 0.2704 -5.0333 -10.8758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413529932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:59 Heat of formation + Delta-G solvation = 21.338541 kcal Electronic energy + Delta-G solvation = -27515.534677 eV Core-core repulsion = 23635.951054 eV Total energy + Delta-G solvation = -3879.583623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12255 -40.13188 -38.35981 -36.64630 -35.14647 -33.62836 -32.97215 -32.76011 -30.77541 -29.26610 -28.12373 -26.60186 -26.25333 -24.38984 -22.93609 -21.93454 -21.55082 -20.60374 -19.91689 -19.19961 -17.79316 -17.67743 -16.63786 -16.52285 -16.13141 -15.59180 -15.30909 -14.90086 -14.75215 -14.55806 -14.38309 -14.10225 -13.89246 -13.64407 -13.36823 -12.89958 -12.81002 -12.52654 -12.40279 -12.21880 -12.12166 -11.81186 -11.67022 -11.33280 -11.19228 -11.06714 -10.99382 -10.85191 -10.79527 -10.34876 -10.23855 -10.22386 -9.85887 -9.46164 -9.08586 -8.76711 -8.61543 -8.06240 -7.37177 -6.22657 -4.27603 2.31383 2.68788 3.11789 3.24487 3.30171 3.34340 3.40531 3.80950 3.90997 4.08138 4.32386 4.36594 4.42492 4.59235 4.79378 4.83116 4.94868 5.03718 5.06044 5.12350 5.15191 5.33561 5.36661 5.44234 5.51070 5.61977 5.69598 5.73551 5.85945 5.88177 5.98073 6.10833 6.17153 6.30149 6.57108 6.61800 6.69056 6.85945 7.00269 7.11595 7.24092 7.53870 7.71199 7.82559 7.97280 8.09724 8.62379 8.69672 8.83093 9.37863 10.86014 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.002478 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.382671 B =11296.093861 C =11974.254832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.172 3.828 3 H 0.071 0.929 4 C -0.101 4.101 5 H 0.083 0.917 6 C 0.081 3.919 7 O -0.572 6.572 8 C -0.110 4.110 9 C -0.137 4.137 10 C 0.108 3.892 11 N -0.624 5.624 12 C 0.717 3.283 13 O -0.558 6.558 14 N -0.645 5.645 15 C 0.276 3.724 16 C -0.286 4.286 17 C 0.050 3.950 18 N -0.321 5.321 19 C 0.259 3.741 20 C -0.527 4.527 21 H 0.068 0.932 22 C 0.061 3.939 23 N -0.896 5.896 24 Si 0.908 3.092 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.273 1.273 28 N -0.309 5.309 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.379 0.621 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.404 0.596 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 10.074 24.570 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.068 3.932 3 H 0.089 0.911 4 C -0.121 4.121 5 H 0.102 0.898 6 C 0.003 3.997 7 O -0.378 6.378 8 C -0.147 4.147 9 C -0.175 4.175 10 C -0.016 4.016 11 N -0.362 5.362 12 C 0.419 3.581 13 O -0.434 6.434 14 N -0.298 5.298 15 C 0.022 3.978 16 C -0.317 4.317 17 C -0.100 4.100 18 N -0.103 5.103 19 C 0.141 3.859 20 C -0.565 4.565 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.140 5.140 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.226 0.774 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.241 0.759 42 H 0.178 0.822 43 H 0.184 0.816 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.856 9.061 23.259 25.430 hybrid contribution 0.479 0.843 0.007 0.970 sum 5.335 9.905 23.266 25.843 Atomic orbital electron populations 1.22312 0.92096 1.04525 1.01036 1.20956 0.96082 0.94203 0.81976 0.91060 1.21602 0.96882 1.00860 0.92744 0.89849 1.22209 0.98683 0.93690 0.85137 1.86469 1.85439 1.49703 1.16153 1.21500 0.94640 1.00401 0.98194 1.21951 1.01383 0.99743 0.94437 1.21718 0.80649 1.00706 0.98508 1.47219 1.06245 1.61827 1.20902 1.15578 0.84725 0.78677 0.79144 1.90901 1.15027 1.60870 1.76592 1.41751 1.13921 1.54430 1.19676 1.18806 0.90269 0.99601 0.89135 1.21495 0.94274 1.14177 1.01761 1.22550 0.95549 0.97379 0.94492 1.49045 1.04583 1.38748 1.17916 1.19723 0.99262 0.92208 0.74680 1.21259 1.16063 1.21929 0.97275 0.91332 1.24948 0.96478 0.94799 0.97923 1.69919 1.37226 1.26570 1.19688 0.86328 0.81362 0.79367 0.79431 1.20361 1.21000 1.19748 1.77322 1.09220 1.24438 1.03047 0.91183 0.93870 0.89606 0.93544 0.92838 0.77434 0.90821 0.91933 0.91205 0.90396 0.90203 0.90883 0.75896 0.82211 0.81597 0.93795 0.92570 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.49 37.16 0.28 -1.28 16 2 C 0.17 1.64 2.95 -67.60 -0.20 1.44 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.10 -0.85 2.05 -90.50 -0.19 -1.04 16 5 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 6 C 0.08 0.55 6.31 37.16 0.23 0.78 16 7 O -0.57 -4.18 13.18 -35.23 -0.46 -4.65 16 8 C -0.11 -0.81 5.08 -26.69 -0.14 -0.95 16 9 C -0.14 -1.01 6.08 -26.61 -0.16 -1.17 16 10 C 0.11 0.91 6.43 -3.71 -0.02 0.88 16 11 N -0.62 -6.97 2.97 -170.92 -0.51 -7.47 16 12 C 0.72 10.80 8.07 -86.92 -0.70 10.10 16 13 O -0.56 -9.58 9.06 5.28 0.05 -9.53 16 14 N -0.65 -10.44 5.34 -15.51 -0.08 -10.53 16 15 C 0.28 5.64 8.11 -154.36 -1.25 4.39 16 16 C -0.29 -5.73 9.61 -39.84 -0.38 -6.12 16 17 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 18 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 19 C 0.26 6.64 6.26 -5.19 -0.03 6.61 16 20 C -0.53 -14.75 9.23 -34.44 -0.32 -15.07 16 21 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 23 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 24 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 28 N -0.31 -7.22 12.42 31.44 0.39 -6.83 16 29 H 0.07 0.93 6.95 -51.93 -0.36 0.57 16 30 H 0.04 0.37 6.30 -51.93 -0.33 0.04 16 31 H 0.09 1.12 6.54 -51.93 -0.34 0.78 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.34 6.30 -51.93 -0.33 0.01 16 34 H 0.38 1.08 9.12 45.56 0.42 1.50 16 35 H 0.07 0.59 7.79 -51.93 -0.40 0.19 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.66 5.59 -51.93 -0.29 0.37 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.40 5.53 6.33 -40.82 -0.26 5.28 16 42 H 0.16 3.11 5.93 -52.48 -0.31 2.80 16 43 H 0.17 2.75 8.06 -52.48 -0.42 2.33 16 44 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 46 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -33.34 363.57 -8.80 -42.14 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.97 Total: 6.48 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -3.17 Total: 1.00 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.31 Total: -57.36 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.42 Total: -14.18 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.34 -8.80 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413529932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.480 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds