Wall clock time and date at job start Tue Mar 31 2020 14:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.58620 * 2 1 4 4 C 1.53186 * 109.70451 * 120.35340 * 2 1 3 5 5 H 1.09001 * 109.49905 * 54.53998 * 4 2 1 6 6 C 1.53001 * 109.49885 * 294.44843 * 4 2 1 7 7 O 1.42905 * 109.47271 * 175.00157 * 6 4 2 8 8 C 1.53040 * 109.31457 * 174.49438 * 4 2 1 9 9 C 1.53039 * 109.53952 * 298.63508 * 8 4 2 10 10 C 1.53186 * 109.31055 * 61.36172 * 9 8 4 11 11 N 1.46925 * 108.77873 * 305.36639 * 10 9 8 12 12 C 1.34773 * 120.63092 * 233.62701 * 11 10 9 13 13 O 1.21594 * 120.00073 * 185.82239 * 12 11 10 14 14 N 1.34774 * 120.00328 * 5.82460 * 12 11 10 15 15 C 1.40192 * 120.00241 * 185.28931 * 14 12 11 16 16 C 1.40398 * 125.97454 * 0.02562 * 15 14 12 17 17 C 1.35243 * 107.86991 * 179.97438 * 16 15 14 18 18 N 1.34960 * 107.85902 * 0.02562 * 17 16 15 19 19 C 1.46503 * 125.97675 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47129 * 124.99836 * 19 18 17 21 21 H 1.08007 * 119.99444 * 0.02562 * 20 19 18 22 22 C 1.37866 * 120.00233 * 179.97438 * 20 19 18 23 23 N 1.31521 * 120.00088 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00281 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47015 * 90.00200 * 24 22 20 26 26 H 1.48504 * 109.47263 * 210.00125 * 24 22 20 27 27 H 1.48502 * 109.47187 * 329.99821 * 24 22 20 28 28 N 1.31214 * 125.97047 * 179.69294 * 15 14 12 29 29 H 1.09000 * 109.46753 * 174.48121 * 1 2 3 30 30 H 1.08998 * 109.47300 * 294.48346 * 1 2 3 31 31 H 1.08999 * 109.47262 * 54.48710 * 1 2 3 32 32 H 1.09006 * 109.46942 * 294.99739 * 6 4 2 33 33 H 1.08996 * 109.47245 * 54.99347 * 6 4 2 34 34 H 0.96699 * 113.99799 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46151 * 178.61337 * 8 4 2 36 36 H 1.08997 * 109.44844 * 58.64922 * 8 4 2 37 37 H 1.09004 * 109.49644 * 301.41600 * 9 8 4 38 38 H 1.09002 * 109.52581 * 181.33287 * 9 8 4 39 39 H 1.08997 * 109.58841 * 185.57620 * 10 9 8 40 40 H 1.09002 * 109.70325 * 65.22592 * 10 9 8 41 41 H 0.97005 * 119.99699 * 5.29477 * 14 12 11 42 42 H 1.08004 * 126.06539 * 359.97438 * 16 15 14 43 43 H 1.08004 * 126.06963 * 179.97438 * 17 16 15 44 44 H 1.08996 * 109.46854 * 244.99562 * 19 18 17 45 45 H 1.08993 * 109.46923 * 5.00144 * 19 18 17 46 46 H 0.96994 * 120.00527 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2445 5 1 1.6080 -1.7256 1.2906 6 6 1.6567 0.0595 2.4965 7 8 2.0359 -0.6774 3.6607 8 6 3.5706 -0.8442 1.1674 9 6 3.9603 -1.6607 -0.0670 10 6 3.4655 -0.9425 -1.3263 11 7 2.0226 -0.6981 -1.1953 12 6 1.1672 -1.1068 -2.1532 13 8 -0.0093 -0.8069 -2.0860 14 7 1.6156 -1.8480 -3.1856 15 6 0.7511 -2.1796 -4.2382 16 6 -0.5986 -1.8078 -4.3452 17 6 -1.0801 -2.3211 -5.5001 18 7 -0.0776 -2.9931 -6.1041 19 6 -0.1657 -3.7046 -7.3818 20 6 0.8997 -3.1923 -8.3165 21 1 1.5751 -2.4149 -7.9911 22 6 1.0129 -3.7169 -9.5865 23 7 0.1907 -4.6640 -9.9824 24 14 2.3339 -3.0824 -10.7448 25 1 3.5711 -3.8853 -10.5718 26 1 1.8601 -3.1993 -12.1474 27 1 2.6205 -1.6584 -10.4363 28 7 1.0635 -2.8865 -5.2986 29 1 -0.3633 -1.0229 -0.0988 30 1 -0.3634 0.4259 0.9352 31 1 -0.3634 0.5969 -0.8365 32 1 2.1679 1.0223 2.4935 33 1 0.5788 0.2206 2.5035 34 1 1.8183 -0.2365 4.4934 35 1 3.9430 -1.3406 2.0635 36 1 4.0069 0.1521 1.0964 37 1 3.5037 -2.6488 -0.0086 38 1 5.0447 -1.7628 -0.1087 39 1 3.6525 -1.5665 -2.2002 40 1 3.9884 0.0075 -1.4370 41 1 2.5367 -2.1521 -3.2003 42 1 -1.1538 -1.2169 -3.6318 43 1 -2.0881 -2.2130 -5.8725 44 1 -0.0195 -4.7716 -7.2142 45 1 -1.1478 -3.5373 -7.8238 46 1 0.2704 -5.0333 -10.8758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413529932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:58 Heat of formation + Delta-G solvation = -1.541549 kcal Electronic energy + Delta-G solvation = -27516.526832 eV Core-core repulsion = 23635.951054 eV Total energy + Delta-G solvation = -3880.575778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.37785 -41.51115 -39.26003 -37.31239 -36.47350 -35.42337 -34.05912 -33.63995 -32.49050 -30.91558 -29.05555 -28.40507 -26.88273 -25.56983 -24.58666 -22.81578 -22.67525 -21.88897 -21.10847 -20.43679 -18.78664 -18.67743 -18.36785 -18.02560 -17.29561 -16.88320 -16.31690 -16.09923 -15.96310 -15.63080 -15.49707 -15.30951 -14.92769 -14.64983 -14.46629 -14.26176 -14.11471 -13.79006 -13.59389 -13.45229 -13.32941 -13.12747 -12.88498 -12.71815 -12.53851 -12.28591 -12.13298 -11.95589 -11.89429 -11.71274 -11.52954 -11.38439 -11.33778 -10.75355 -10.71844 -10.24712 -9.77893 -9.63343 -9.01547 -8.32235 -6.46570 1.07364 1.13427 1.38238 1.39095 1.50578 1.70835 2.02058 2.35393 2.40782 2.80704 2.99076 3.33588 3.67148 3.75430 3.93484 3.99795 4.13616 4.19126 4.25308 4.28537 4.43044 4.46284 4.52060 4.68136 4.73160 4.76029 4.82544 4.88465 4.90427 4.96447 5.01258 5.07087 5.08596 5.15873 5.18146 5.30879 5.43688 5.48732 5.56749 5.69134 5.73273 5.85352 5.99870 6.30531 6.60948 6.68694 6.95624 7.12702 7.23285 7.43401 8.75184 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.002478 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.382671 B =11296.093861 C =11974.254832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.169 3.831 3 H 0.095 0.905 4 C -0.097 4.097 5 H 0.056 0.944 6 C 0.083 3.917 7 O -0.592 6.592 8 C -0.105 4.105 9 C -0.132 4.132 10 C 0.101 3.899 11 N -0.616 5.616 12 C 0.711 3.289 13 O -0.583 6.583 14 N -0.641 5.641 15 C 0.285 3.715 16 C -0.290 4.290 17 C 0.055 3.945 18 N -0.346 5.346 19 C 0.273 3.727 20 C -0.546 4.546 21 H 0.052 0.948 22 C 0.017 3.983 23 N -0.921 5.921 24 Si 0.973 3.027 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 N -0.350 5.350 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.398 0.602 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.414 0.586 42 H 0.168 0.832 43 H 0.200 0.800 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 11.829 25.763 28.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.067 3.933 3 H 0.113 0.887 4 C -0.117 4.117 5 H 0.074 0.926 6 C 0.005 3.995 7 O -0.400 6.400 8 C -0.143 4.143 9 C -0.170 4.170 10 C -0.021 4.021 11 N -0.353 5.353 12 C 0.412 3.588 13 O -0.460 6.460 14 N -0.296 5.296 15 C 0.030 3.970 16 C -0.321 4.321 17 C -0.093 4.093 18 N -0.128 5.128 19 C 0.154 3.846 20 C -0.584 4.584 21 H 0.070 0.930 22 C -0.183 4.183 23 N -0.560 5.560 24 Si 0.797 3.203 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.197 1.197 28 N -0.181 5.181 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.253 0.747 42 H 0.185 0.815 43 H 0.217 0.783 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.276 10.836 24.521 27.533 hybrid contribution 0.026 0.335 -0.179 0.381 sum 6.302 11.170 24.342 27.514 Atomic orbital electron populations 1.22147 0.93284 1.02347 1.01413 1.21143 0.95170 0.95315 0.81707 0.88734 1.21519 0.97544 0.99525 0.93093 0.92561 1.22181 0.99100 0.93946 0.84262 1.86417 1.85642 1.50714 1.17276 1.21478 0.93704 1.01262 0.97836 1.21926 1.02515 0.98698 0.93871 1.21983 0.78920 1.02061 0.99128 1.47344 1.07043 1.60699 1.20188 1.15812 0.84949 0.78562 0.79434 1.90889 1.16302 1.61647 1.77184 1.41816 1.14011 1.54696 1.19051 1.19105 0.91050 0.97848 0.89036 1.21677 0.94326 1.14297 1.01849 1.23155 0.96324 0.95784 0.94062 1.48812 1.05659 1.40354 1.17949 1.19323 0.98692 0.91049 0.75513 1.21393 1.16692 1.22000 0.98313 0.92970 1.25757 0.98493 0.94819 0.99263 1.69998 1.38417 1.27225 1.20344 0.85334 0.78685 0.78631 0.77674 1.19777 1.19687 1.19712 1.77239 1.09993 1.26563 1.04349 0.94092 0.91309 0.91814 0.91457 0.92573 0.75245 0.91218 0.90156 0.92857 0.88252 0.90303 0.88640 0.74668 0.81457 0.78280 0.96203 0.92386 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 7.49 71.98 0.54 -2.33 16 2 C 0.17 2.94 2.95 44.97 0.13 3.07 16 3 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.10 -1.46 2.05 -10.72 -0.02 -1.49 16 5 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 6 C 0.08 0.92 6.31 71.98 0.45 1.37 16 7 O -0.59 -7.42 13.18 -148.98 -1.96 -9.38 16 8 C -0.11 -1.30 5.08 30.62 0.16 -1.14 16 9 C -0.13 -1.67 6.08 30.67 0.19 -1.48 16 10 C 0.10 1.50 6.43 86.36 0.56 2.06 16 11 N -0.62 -13.01 2.97 -812.92 -2.42 -15.42 16 12 C 0.71 21.25 8.07 179.06 1.45 22.69 16 13 O -0.58 -20.16 9.06 -4.01 -0.04 -20.20 16 14 N -0.64 -20.77 5.34 -321.24 -1.72 -22.49 16 15 C 0.29 11.79 8.11 133.31 1.08 12.88 16 16 C -0.29 -11.68 9.61 22.10 0.21 -11.47 16 17 C 0.06 2.24 11.44 83.52 0.96 3.19 16 18 N -0.35 -16.64 3.67 -351.84 -1.29 -17.93 16 19 C 0.27 14.42 6.26 85.63 0.54 14.96 16 20 C -0.55 -31.16 9.23 25.60 0.24 -30.92 16 21 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 22 C 0.02 0.94 5.46 84.65 0.46 1.40 16 23 N -0.92 -52.65 13.29 21.44 0.28 -52.37 16 24 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 N -0.35 -16.74 12.42 -54.44 -0.68 -17.41 16 29 H 0.04 1.10 6.95 -2.39 -0.02 1.09 16 30 H 0.07 1.07 6.30 -2.39 -0.02 1.06 16 31 H 0.06 1.65 6.54 -2.39 -0.02 1.63 16 32 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.06 0.58 6.30 -2.39 -0.02 0.56 16 34 H 0.40 1.37 9.12 -74.06 -0.68 0.69 16 35 H 0.07 0.96 7.79 -2.39 -0.02 0.94 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.19 5.59 -2.39 -0.01 1.18 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.41 11.29 6.33 -92.70 -0.59 10.71 16 42 H 0.17 6.50 5.93 -2.91 -0.02 6.49 16 43 H 0.20 6.40 8.06 -2.91 -0.02 6.38 16 44 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 46 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -73.11 363.57 0.90 -72.21 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.24 Total: 24.27 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.93 Total: 12.79 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -5.81 Total: -125.62 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -2.00 Total: -29.58 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.11 0.90 -72.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413529932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.668 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds