Wall clock time and date at job start Tue Mar 31 2020 14:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.69796 * 2 1 4 4 C 1.52757 * 109.51079 * 239.88988 * 2 1 3 5 5 H 1.09001 * 109.36044 * 305.61012 * 4 2 1 6 6 C 1.52996 * 109.59496 * 65.64779 * 4 2 1 7 7 O 1.42903 * 109.47250 * 184.98489 * 6 4 2 8 8 C 1.53045 * 109.38469 * 185.70517 * 4 2 1 9 9 C 1.53034 * 109.53778 * 61.23331 * 8 4 2 10 10 C 1.53194 * 109.31492 * 298.63698 * 9 8 4 11 11 N 1.46919 * 109.58863 * 120.35505 * 2 1 3 12 12 C 1.34782 * 120.63319 * 353.42274 * 11 2 1 13 13 O 1.21584 * 119.99652 * 5.08915 * 12 11 2 14 14 N 1.34776 * 119.99918 * 185.08634 * 12 11 2 15 15 C 1.40193 * 119.99896 * 174.79820 * 14 12 11 16 16 C 1.40411 * 125.96849 * 0.02562 * 15 14 12 17 17 C 1.35245 * 107.86405 * 179.71821 * 16 15 14 18 18 N 1.34966 * 107.85736 * 0.42099 * 17 16 15 19 19 C 1.46507 * 125.97436 * 179.83936 * 18 17 16 20 20 C 1.50699 * 109.46895 * 124.71612 * 19 18 17 21 21 H 1.07999 * 120.00130 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00009 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99647 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47369 * 270.00504 * 24 22 20 26 26 H 1.48496 * 109.47340 * 30.00300 * 24 22 20 27 27 H 1.48496 * 109.47155 * 150.00688 * 24 22 20 28 28 N 1.31203 * 125.97601 * 179.97438 * 15 14 12 29 29 H 1.09002 * 109.47471 * 304.32104 * 1 2 3 30 30 H 1.09000 * 109.47397 * 64.32604 * 1 2 3 31 31 H 1.09006 * 109.47043 * 184.32382 * 1 2 3 32 32 H 1.08996 * 109.47022 * 304.98373 * 6 4 2 33 33 H 1.09000 * 109.47363 * 64.98209 * 6 4 2 34 34 H 0.96698 * 113.99577 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.45661 * 301.21255 * 8 4 2 36 36 H 1.08996 * 109.45925 * 181.26179 * 8 4 2 37 37 H 1.09007 * 109.49646 * 178.68285 * 9 8 4 38 38 H 1.09003 * 109.52850 * 58.60861 * 9 8 4 39 39 H 1.08999 * 109.58297 * 294.84493 * 10 9 8 40 40 H 1.08999 * 109.58346 * 174.42295 * 10 9 8 41 41 H 0.97004 * 120.00177 * 354.80069 * 14 12 11 42 42 H 1.07996 * 126.06481 * 359.94220 * 16 15 14 43 43 H 1.08000 * 126.07394 * 180.26966 * 17 16 15 44 44 H 1.09002 * 109.47054 * 4.72210 * 19 18 17 45 45 H 1.08992 * 109.47174 * 244.71736 * 19 18 17 46 46 H 0.97001 * 119.99529 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7223 -1.2456 5 1 1.5964 -1.7168 -1.2938 6 6 1.6513 0.0714 -2.4944 7 8 2.0270 -0.6627 -3.6615 8 6 3.5639 -0.8460 -1.1727 9 6 3.9523 -1.6684 0.0580 10 6 3.4645 -0.9518 1.3210 11 7 2.0225 -0.6995 1.1944 12 6 1.1674 -1.1070 2.1532 13 8 -0.0311 -0.9802 1.9926 14 7 1.6408 -1.6552 3.2897 15 6 0.7603 -1.9788 4.3316 16 6 -0.6306 -1.7873 4.3253 17 6 -1.1159 -2.2310 5.5072 18 7 -0.0747 -2.6780 6.2404 19 6 -0.1520 -3.2422 7.5903 20 6 0.4853 -4.6077 7.6012 21 1 0.9062 -5.0145 6.6936 22 6 0.5320 -5.3374 8.7702 23 7 0.0199 -4.8418 9.8756 24 14 1.3226 -7.0297 8.7840 25 1 0.2966 -8.0580 8.4750 26 1 2.3987 -7.0817 7.7621 27 1 1.9008 -7.2950 10.1258 28 7 1.0919 -2.5143 5.4826 29 1 -0.3634 0.5794 0.8487 30 1 -0.3634 0.4452 -0.9262 31 1 -0.3633 -1.0248 0.0775 32 1 0.5738 0.2356 -2.4996 33 1 2.1652 1.0326 -2.4887 34 1 1.8105 -0.2179 -4.4924 35 1 4.0057 0.1478 -1.0997 36 1 3.9313 -1.3413 -2.0714 37 1 5.0364 -1.7759 0.0964 38 1 3.4911 -2.6542 -0.0021 39 1 3.9929 -0.0048 1.4309 40 1 3.6505 -1.5797 2.1923 41 1 2.5908 -1.8258 3.3869 42 1 -1.2105 -1.3644 3.5183 43 1 -2.1522 -2.2260 5.8113 44 1 -1.1967 -3.3264 7.8896 45 1 0.3742 -2.5900 8.2873 46 1 0.0524 -5.3553 10.6979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413529935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:02 Heat of formation + Delta-G solvation = 22.216606 kcal Electronic energy + Delta-G solvation = -27523.094273 eV Core-core repulsion = 23643.548726 eV Total energy + Delta-G solvation = -3879.545547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13041 -40.13768 -38.36406 -36.64211 -35.15390 -33.63439 -32.96891 -32.76628 -30.77454 -29.26703 -28.11014 -26.59678 -26.25369 -24.38744 -22.93852 -21.94409 -21.54422 -20.61127 -19.93350 -19.18589 -17.79538 -17.66040 -16.63652 -16.52396 -15.99146 -15.67107 -15.39669 -14.89410 -14.79831 -14.55460 -14.25508 -14.19886 -13.89894 -13.55462 -13.35510 -12.92274 -12.80101 -12.53132 -12.38366 -12.25884 -12.11428 -11.81084 -11.71103 -11.32281 -11.17765 -11.07392 -10.99026 -10.81313 -10.78434 -10.35095 -10.23572 -10.21401 -9.85406 -9.46313 -9.05799 -8.75833 -8.61241 -8.06292 -7.37312 -6.22582 -4.27419 2.31014 2.68429 3.12344 3.24417 3.30381 3.35142 3.41248 3.82833 3.89288 4.08589 4.32829 4.37094 4.43722 4.59375 4.79858 4.83486 4.95555 5.04435 5.06276 5.12507 5.15526 5.33540 5.36342 5.44696 5.50959 5.62633 5.69908 5.75034 5.86264 5.89069 5.99610 6.13195 6.16117 6.30667 6.57123 6.63002 6.68886 6.85892 7.00186 7.11449 7.24969 7.53825 7.71440 7.82659 7.97280 8.09719 8.62339 8.69788 8.83278 9.38051 10.86055 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.002523 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.691725 B =11095.749647 C =11786.496881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.172 3.828 3 H 0.070 0.930 4 C -0.102 4.102 5 H 0.084 0.916 6 C 0.081 3.919 7 O -0.572 6.572 8 C -0.110 4.110 9 C -0.136 4.136 10 C 0.107 3.893 11 N -0.623 5.623 12 C 0.717 3.283 13 O -0.558 6.558 14 N -0.645 5.645 15 C 0.276 3.724 16 C -0.286 4.286 17 C 0.050 3.950 18 N -0.321 5.321 19 C 0.259 3.741 20 C -0.527 4.527 21 H 0.068 0.932 22 C 0.061 3.939 23 N -0.896 5.896 24 Si 0.907 3.093 25 H -0.278 1.278 26 H -0.272 1.272 27 H -0.284 1.284 28 N -0.309 5.309 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.379 0.621 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.403 0.597 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 12.171 -23.502 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.068 3.932 3 H 0.088 0.912 4 C -0.121 4.121 5 H 0.102 0.898 6 C 0.003 3.997 7 O -0.377 6.377 8 C -0.147 4.147 9 C -0.175 4.175 10 C -0.016 4.016 11 N -0.362 5.362 12 C 0.418 3.582 13 O -0.433 6.433 14 N -0.298 5.298 15 C 0.022 3.978 16 C -0.317 4.317 17 C -0.100 4.100 18 N -0.103 5.103 19 C 0.141 3.859 20 C -0.566 4.566 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.204 1.204 26 H -0.197 1.197 27 H -0.210 1.210 28 N -0.140 5.140 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.226 0.774 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.241 0.759 42 H 0.178 0.822 43 H 0.184 0.816 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.624 11.337 -22.094 25.462 hybrid contribution 0.184 -0.385 -0.611 0.745 sum 5.808 10.952 -22.705 25.869 Atomic orbital electron populations 1.22325 0.92021 1.04803 1.00632 1.20872 0.96156 0.94061 0.82122 0.91164 1.21523 0.96890 1.00944 0.92764 0.89798 1.22202 0.98712 0.93679 0.85095 1.86470 1.85615 1.49540 1.16120 1.21499 0.94664 1.00335 0.98231 1.21941 1.01380 0.99760 0.94387 1.21719 0.80711 1.00548 0.98610 1.47199 1.06383 1.61867 1.20708 1.15588 0.84979 0.78234 0.79363 1.90914 1.13231 1.60746 1.78450 1.41758 1.10072 1.64447 1.13502 1.18805 0.89670 1.00549 0.88780 1.21501 0.92696 1.16794 1.00725 1.22551 0.94886 0.99831 0.92700 1.49047 1.01963 1.44538 1.14753 1.19722 0.99171 0.94428 0.72539 1.21265 1.38769 1.00116 0.96407 0.91333 1.24949 0.95297 0.98882 0.95009 1.69922 1.45049 1.38292 1.00140 0.86333 0.79586 0.83159 0.77463 1.20436 1.19651 1.20959 1.77317 1.08771 1.24850 1.03077 0.90443 0.94022 0.90322 0.92826 0.93577 0.77442 0.91955 0.90820 0.90403 0.91192 0.90941 0.90204 0.75920 0.82204 0.81599 0.92581 0.93777 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 7.45 37.16 0.28 -1.27 16 2 C 0.17 1.64 2.94 -67.83 -0.20 1.44 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.10 -0.87 2.02 -90.72 -0.18 -1.05 16 5 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 6 C 0.08 0.56 6.31 37.16 0.23 0.79 16 7 O -0.57 -4.25 13.17 -35.23 -0.46 -4.71 16 8 C -0.11 -0.83 5.08 -26.69 -0.14 -0.96 16 9 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 10 C 0.11 0.90 6.39 -3.71 -0.02 0.88 16 11 N -0.62 -6.95 2.98 -171.17 -0.51 -7.46 16 12 C 0.72 10.79 8.18 -86.91 -0.71 10.08 16 13 O -0.56 -9.58 8.89 5.29 0.05 -9.53 16 14 N -0.65 -10.44 5.36 -15.51 -0.08 -10.52 16 15 C 0.28 5.64 8.11 -154.37 -1.25 4.39 16 16 C -0.29 -5.73 9.61 -39.83 -0.38 -6.11 16 17 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 18 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 19 C 0.26 6.64 6.26 -5.19 -0.03 6.61 16 20 C -0.53 -14.79 9.24 -34.44 -0.32 -15.11 16 21 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.90 -25.48 13.29 55.43 0.74 -24.75 16 24 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 N -0.31 -7.22 12.42 31.44 0.39 -6.83 16 29 H 0.08 1.00 6.79 -51.93 -0.35 0.65 16 30 H 0.04 0.36 6.31 -51.93 -0.33 0.03 16 31 H 0.08 1.06 6.70 -51.93 -0.35 0.71 16 32 H 0.05 0.34 6.30 -51.93 -0.33 0.02 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.38 1.11 9.12 45.56 0.42 1.53 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.66 5.65 -51.93 -0.29 0.36 16 41 H 0.40 5.52 6.32 -40.82 -0.26 5.26 16 42 H 0.16 3.11 5.93 -52.49 -0.31 2.79 16 43 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 44 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 45 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -33.40 363.47 -8.81 -42.21 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.98 Total: 6.49 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -3.18 Total: 0.92 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.30 Total: -57.35 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.42 Total: -14.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.40 -8.81 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413529935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.427 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds