Wall clock time and date at job start Tue Mar 31 2020 14:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.69796 * 2 1 4 4 C 1.52757 * 109.51079 * 239.88988 * 2 1 3 5 5 H 1.09001 * 109.36044 * 305.61012 * 4 2 1 6 6 C 1.52996 * 109.59496 * 65.64779 * 4 2 1 7 7 O 1.42903 * 109.47250 * 184.98489 * 6 4 2 8 8 C 1.53045 * 109.38469 * 185.70517 * 4 2 1 9 9 C 1.53034 * 109.53778 * 61.23331 * 8 4 2 10 10 C 1.53194 * 109.31492 * 298.63698 * 9 8 4 11 11 N 1.46919 * 109.58863 * 120.35505 * 2 1 3 12 12 C 1.34782 * 120.63319 * 353.42274 * 11 2 1 13 13 O 1.21584 * 119.99652 * 5.08915 * 12 11 2 14 14 N 1.34776 * 119.99918 * 185.08634 * 12 11 2 15 15 C 1.40193 * 119.99896 * 174.79820 * 14 12 11 16 16 C 1.40411 * 125.96849 * 0.02562 * 15 14 12 17 17 C 1.35245 * 107.86405 * 179.71821 * 16 15 14 18 18 N 1.34966 * 107.85736 * 0.42099 * 17 16 15 19 19 C 1.46507 * 125.97436 * 179.83936 * 18 17 16 20 20 C 1.50699 * 109.46895 * 124.71612 * 19 18 17 21 21 H 1.07999 * 120.00130 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00009 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99647 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47369 * 270.00504 * 24 22 20 26 26 H 1.48496 * 109.47340 * 30.00300 * 24 22 20 27 27 H 1.48496 * 109.47155 * 150.00688 * 24 22 20 28 28 N 1.31203 * 125.97601 * 179.97438 * 15 14 12 29 29 H 1.09002 * 109.47471 * 304.32104 * 1 2 3 30 30 H 1.09000 * 109.47397 * 64.32604 * 1 2 3 31 31 H 1.09006 * 109.47043 * 184.32382 * 1 2 3 32 32 H 1.08996 * 109.47022 * 304.98373 * 6 4 2 33 33 H 1.09000 * 109.47363 * 64.98209 * 6 4 2 34 34 H 0.96698 * 113.99577 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.45661 * 301.21255 * 8 4 2 36 36 H 1.08996 * 109.45925 * 181.26179 * 8 4 2 37 37 H 1.09007 * 109.49646 * 178.68285 * 9 8 4 38 38 H 1.09003 * 109.52850 * 58.60861 * 9 8 4 39 39 H 1.08999 * 109.58297 * 294.84493 * 10 9 8 40 40 H 1.08999 * 109.58346 * 174.42295 * 10 9 8 41 41 H 0.97004 * 120.00177 * 354.80069 * 14 12 11 42 42 H 1.07996 * 126.06481 * 359.94220 * 16 15 14 43 43 H 1.08000 * 126.07394 * 180.26966 * 17 16 15 44 44 H 1.09002 * 109.47054 * 4.72210 * 19 18 17 45 45 H 1.08992 * 109.47174 * 244.71736 * 19 18 17 46 46 H 0.97001 * 119.99529 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7223 -1.2456 5 1 1.5964 -1.7168 -1.2938 6 6 1.6513 0.0714 -2.4944 7 8 2.0270 -0.6627 -3.6615 8 6 3.5639 -0.8460 -1.1727 9 6 3.9523 -1.6684 0.0580 10 6 3.4645 -0.9518 1.3210 11 7 2.0225 -0.6995 1.1944 12 6 1.1674 -1.1070 2.1532 13 8 -0.0311 -0.9802 1.9926 14 7 1.6408 -1.6552 3.2897 15 6 0.7603 -1.9788 4.3316 16 6 -0.6306 -1.7873 4.3253 17 6 -1.1159 -2.2310 5.5072 18 7 -0.0747 -2.6780 6.2404 19 6 -0.1520 -3.2422 7.5903 20 6 0.4853 -4.6077 7.6012 21 1 0.9062 -5.0145 6.6936 22 6 0.5320 -5.3374 8.7702 23 7 0.0199 -4.8418 9.8756 24 14 1.3226 -7.0297 8.7840 25 1 0.2966 -8.0580 8.4750 26 1 2.3987 -7.0817 7.7621 27 1 1.9008 -7.2950 10.1258 28 7 1.0919 -2.5143 5.4826 29 1 -0.3634 0.5794 0.8487 30 1 -0.3634 0.4452 -0.9262 31 1 -0.3633 -1.0248 0.0775 32 1 0.5738 0.2356 -2.4996 33 1 2.1652 1.0326 -2.4887 34 1 1.8105 -0.2179 -4.4924 35 1 4.0057 0.1478 -1.0997 36 1 3.9313 -1.3413 -2.0714 37 1 5.0364 -1.7759 0.0964 38 1 3.4911 -2.6542 -0.0021 39 1 3.9929 -0.0048 1.4309 40 1 3.6505 -1.5797 2.1923 41 1 2.5908 -1.8258 3.3869 42 1 -1.2105 -1.3644 3.5183 43 1 -2.1522 -2.2260 5.8113 44 1 -1.1967 -3.3264 7.8896 45 1 0.3742 -2.5900 8.2873 46 1 0.0524 -5.3553 10.6979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413529935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:01 Heat of formation + Delta-G solvation = -0.737269 kcal Electronic energy + Delta-G solvation = -27524.089628 eV Core-core repulsion = 23643.548726 eV Total energy + Delta-G solvation = -3880.540902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.38049 -41.51918 -39.27040 -37.31272 -36.47738 -35.42986 -34.06917 -33.64540 -32.49023 -30.91579 -29.05109 -28.39816 -26.88491 -25.56503 -24.59109 -22.81735 -22.69355 -21.88100 -21.13129 -20.43192 -18.77743 -18.67172 -18.37606 -18.01948 -17.22316 -16.89564 -16.43063 -16.08852 -15.79516 -15.69296 -15.64392 -15.32792 -14.88718 -14.60793 -14.43775 -14.20842 -14.09660 -13.81208 -13.69803 -13.44458 -13.30184 -13.14459 -12.89562 -12.69875 -12.57051 -12.29532 -12.11631 -11.98474 -11.88472 -11.68203 -11.53627 -11.39153 -11.32665 -10.75109 -10.71840 -10.21853 -9.77257 -9.62894 -9.01671 -8.32637 -6.46825 1.06824 1.13772 1.37631 1.38355 1.50396 1.71082 2.02115 2.34996 2.41298 2.81494 2.98662 3.33181 3.67144 3.76242 3.92820 4.00398 4.14049 4.19286 4.25641 4.28470 4.43193 4.46803 4.52521 4.67958 4.72955 4.75894 4.82508 4.88639 4.90889 4.96585 5.01457 5.07437 5.08385 5.16103 5.18670 5.31185 5.43743 5.48743 5.56468 5.69986 5.73554 5.85379 5.99886 6.30484 6.60932 6.68574 6.95917 7.12866 7.22991 7.43563 8.74659 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.002523 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.691725 B =11095.749647 C =11786.496881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.169 3.831 3 H 0.096 0.904 4 C -0.098 4.098 5 H 0.054 0.946 6 C 0.083 3.917 7 O -0.592 6.592 8 C -0.105 4.105 9 C -0.132 4.132 10 C 0.101 3.899 11 N -0.615 5.615 12 C 0.710 3.290 13 O -0.583 6.583 14 N -0.641 5.641 15 C 0.285 3.715 16 C -0.290 4.290 17 C 0.055 3.945 18 N -0.346 5.346 19 C 0.273 3.727 20 C -0.547 4.547 21 H 0.051 0.949 22 C 0.018 3.982 23 N -0.920 5.920 24 Si 0.971 3.029 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.273 1.273 28 N -0.350 5.350 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.398 0.602 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.414 0.586 42 H 0.168 0.832 43 H 0.200 0.800 44 H 0.058 0.942 45 H 0.021 0.979 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 12.855 -25.225 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.067 3.933 3 H 0.114 0.886 4 C -0.118 4.118 5 H 0.073 0.927 6 C 0.006 3.994 7 O -0.401 6.401 8 C -0.142 4.142 9 C -0.170 4.170 10 C -0.021 4.021 11 N -0.352 5.352 12 C 0.412 3.588 13 O -0.460 6.460 14 N -0.296 5.296 15 C 0.030 3.970 16 C -0.322 4.322 17 C -0.093 4.093 18 N -0.128 5.128 19 C 0.155 3.845 20 C -0.585 4.585 21 H 0.069 0.931 22 C -0.182 4.182 23 N -0.559 5.559 24 Si 0.795 3.205 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.198 1.198 28 N -0.182 5.182 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.253 0.747 42 H 0.185 0.815 43 H 0.217 0.783 44 H 0.076 0.924 45 H 0.039 0.961 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.783 12.052 -23.880 27.595 hybrid contribution -0.173 -0.513 -0.236 0.591 sum 6.611 11.539 -24.116 27.539 Atomic orbital electron populations 1.22153 0.93258 1.02604 1.00987 1.21062 0.95206 0.95245 0.81809 0.88604 1.21444 0.97565 0.99537 0.93214 0.92744 1.22176 0.99132 0.93954 0.84188 1.86419 1.85817 1.50585 1.17253 1.21476 0.93717 1.01252 0.97804 1.21922 1.02517 0.98609 0.93989 1.21992 0.78987 1.02023 0.99104 1.47324 1.07208 1.60729 1.19977 1.15825 0.85199 0.78175 0.79606 1.90904 1.14541 1.61628 1.78944 1.41821 1.10197 1.64559 1.12986 1.19104 0.90612 0.98612 0.88704 1.21682 0.92756 1.16873 1.00846 1.23155 0.95797 0.98171 0.92198 1.48812 1.02985 1.46362 1.14612 1.19321 0.98540 0.93091 0.73595 1.21395 1.39545 1.01454 0.96098 0.93097 1.25741 0.95536 1.02475 0.94488 1.69997 1.45542 1.39711 1.00646 0.85355 0.78679 0.78732 0.77703 1.19419 1.19978 1.19765 1.77235 1.09440 1.27079 1.04398 0.92554 0.91470 0.93386 0.92588 0.91374 0.75245 0.90005 0.91296 0.88218 0.93165 0.88375 0.90309 0.74666 0.81465 0.78288 0.92390 0.96062 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 7.45 71.98 0.54 -2.31 16 2 C 0.17 2.94 2.94 44.83 0.13 3.07 16 3 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.10 -1.51 2.02 -10.86 -0.02 -1.53 16 5 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 6 C 0.08 0.93 6.31 71.98 0.45 1.39 16 7 O -0.59 -7.57 13.17 -148.98 -1.96 -9.53 16 8 C -0.11 -1.31 5.08 30.62 0.16 -1.16 16 9 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 10 C 0.10 1.48 6.39 86.36 0.55 2.03 16 11 N -0.62 -12.96 2.98 -813.71 -2.42 -15.38 16 12 C 0.71 21.22 8.18 179.05 1.46 22.69 16 13 O -0.58 -20.22 8.89 -3.98 -0.04 -20.25 16 14 N -0.64 -20.73 5.36 -321.23 -1.72 -22.45 16 15 C 0.29 11.79 8.11 133.32 1.08 12.87 16 16 C -0.29 -11.68 9.61 22.11 0.21 -11.47 16 17 C 0.06 2.24 11.44 83.52 0.96 3.19 16 18 N -0.35 -16.62 3.67 -351.83 -1.29 -17.91 16 19 C 0.27 14.42 6.26 85.63 0.54 14.96 16 20 C -0.55 -31.32 9.24 25.60 0.24 -31.08 16 21 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 22 C 0.02 1.00 5.46 84.66 0.46 1.46 16 23 N -0.92 -52.59 13.29 21.45 0.28 -52.30 16 24 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 N -0.35 -16.74 12.42 -54.43 -0.68 -17.42 16 29 H 0.06 1.44 6.79 -2.39 -0.02 1.43 16 30 H 0.07 1.06 6.31 -2.39 -0.02 1.04 16 31 H 0.05 1.32 6.70 -2.38 -0.02 1.31 16 32 H 0.06 0.59 6.30 -2.39 -0.02 0.57 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.40 1.44 9.12 -74.06 -0.68 0.76 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 37 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.18 5.65 -2.39 -0.01 1.17 16 41 H 0.41 11.23 6.32 -92.71 -0.59 10.64 16 42 H 0.17 6.50 5.93 -2.91 -0.02 6.49 16 43 H 0.20 6.40 8.06 -2.91 -0.02 6.38 16 44 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 45 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -73.43 363.47 0.90 -72.53 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.24 Total: 24.02 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.94 Total: 12.58 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -5.83 Total: -125.47 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -2.00 Total: -29.79 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.43 0.90 -72.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413529935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.798 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds