Wall clock time and date at job start Tue Mar 31 2020 12:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47116 * 2 1 4 4 H 1.09000 * 109.47255 * 305.00226 * 3 2 1 5 5 N 1.46504 * 109.46638 * 64.99864 * 3 2 1 6 6 C 1.34769 * 120.00303 * 274.99722 * 5 3 2 7 7 O 1.21588 * 120.00270 * 4.39458 * 6 5 3 8 8 N 1.34775 * 119.99980 * 184.39219 * 6 5 3 9 9 C 1.46934 * 120.63190 * 174.68241 * 8 6 5 10 10 C 1.52757 * 109.00714 * 233.58719 * 9 8 6 11 11 C 1.53046 * 109.38156 * 305.58310 * 10 9 8 12 12 C 1.50699 * 109.44530 * 181.25737 * 11 10 9 13 13 H 1.08008 * 119.99773 * 239.94026 * 12 11 10 14 14 C 1.37872 * 120.00330 * 59.94127 * 12 11 10 15 15 N 1.31513 * 120.00054 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 120.00345 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46929 * 59.99670 * 16 14 12 18 18 H 1.48498 * 109.47268 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46748 * 300.00070 * 16 14 12 20 20 C 1.53034 * 109.53530 * 61.24461 * 11 10 9 21 21 C 1.46924 * 120.63302 * 354.96329 * 8 6 5 22 22 C 1.50694 * 109.47125 * 185.00079 * 3 2 1 23 23 N 1.29948 * 126.28921 * 285.02544 * 22 3 2 24 24 O 1.21290 * 110.25318 * 179.97438 * 23 22 3 25 25 C 1.33642 * 109.81501 * 0.02562 * 24 23 22 26 26 C 1.50698 * 126.55725 * 180.02562 * 25 24 23 27 27 N 1.31140 * 106.89445 * 359.76519 * 25 24 23 28 28 H 1.09004 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46959 * 299.99762 * 1 2 3 30 30 H 1.08995 * 109.47085 * 60.00048 * 1 2 3 31 31 H 1.09002 * 109.46959 * 240.00238 * 2 1 3 32 32 H 1.09001 * 109.46739 * 120.00238 * 2 1 3 33 33 H 0.97000 * 119.99420 * 95.00450 * 5 3 2 34 34 H 1.09003 * 109.58340 * 353.42095 * 9 8 6 35 35 H 1.08996 * 109.58833 * 113.83994 * 9 8 6 36 36 H 1.09006 * 109.56305 * 185.55484 * 10 9 8 37 37 H 1.08996 * 109.39367 * 65.51239 * 10 9 8 38 38 H 1.08994 * 109.46029 * 301.21855 * 11 10 9 39 39 H 0.97003 * 120.00350 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.49696 * 178.67759 * 20 11 10 41 41 H 1.09001 * 109.52832 * 58.60447 * 20 11 10 42 42 H 1.08998 * 109.58471 * 246.15715 * 21 8 6 43 43 H 1.08995 * 109.58545 * 6.43819 * 21 8 6 44 44 H 1.09000 * 109.46895 * 359.96530 * 26 25 24 45 45 H 1.08998 * 109.47375 * 119.97573 * 26 25 24 46 46 H 1.09006 * 109.46984 * 239.97925 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4352 2.6643 1.3670 7 8 -0.3706 2.5633 0.4621 8 7 0.1110 3.3432 2.4853 9 6 -1.1657 4.0642 2.5798 10 6 -0.8902 5.5141 2.9741 11 6 -0.0559 5.5418 4.2568 12 6 0.1906 6.9717 4.6641 13 1 1.2012 7.3449 4.7403 14 6 -0.8740 7.8033 4.9396 15 7 -2.1046 7.3491 4.8463 16 14 -0.5684 9.5756 5.4452 17 1 0.1661 10.2793 4.3633 18 1 -1.8680 10.2537 5.6827 19 1 0.2396 9.6026 6.6908 20 6 1.2835 4.8435 4.0113 21 6 1.0303 3.3814 3.6308 22 6 3.5419 1.4443 -0.1238 23 7 4.3912 1.1444 0.8128 24 8 5.5265 1.2416 0.3970 25 6 5.5088 1.6248 -0.8831 26 6 6.7070 1.8597 -1.7664 27 7 4.2493 1.7520 -1.2255 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2719 2.1231 1.9978 34 1 -1.6717 4.0393 1.6146 35 1 -1.7948 3.5958 3.3366 36 1 -1.8344 6.0321 3.1430 37 1 -0.3419 6.0092 2.1727 38 1 -0.5944 5.0256 5.0515 39 1 -2.8537 7.9341 5.0405 40 1 1.8866 4.8842 4.9183 41 1 1.8122 5.3442 3.2002 42 1 0.5839 2.8561 4.4752 43 1 1.9718 2.9038 3.3598 44 1 7.6187 1.6687 -1.2002 45 1 6.6640 1.1877 -2.6235 46 1 6.7052 2.8928 -2.1141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434780364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:29 Heat of formation + Delta-G solvation = 38.279840 kcal Electronic energy + Delta-G solvation = -28025.848127 eV Core-core repulsion = 24146.999134 eV Total energy + Delta-G solvation = -3878.848993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.89510 -40.24417 -37.63390 -36.46500 -35.34369 -33.68007 -33.38089 -32.24418 -30.92445 -30.04064 -29.23005 -27.50329 -25.99890 -23.96283 -23.11699 -22.58653 -22.33338 -20.99262 -20.06259 -19.08469 -18.42021 -17.98570 -17.32979 -16.48068 -16.25807 -15.59776 -15.06940 -14.75037 -14.56967 -14.44194 -13.90305 -13.86304 -13.67649 -13.50640 -13.12782 -12.91224 -12.75181 -12.52508 -12.43445 -12.26182 -12.01698 -11.82887 -11.55635 -11.47210 -11.32569 -11.11783 -10.92358 -10.85487 -10.68176 -10.42774 -10.20107 -10.06047 -9.75157 -9.55866 -9.18845 -9.04964 -8.90372 -8.36422 -7.91743 -6.01527 -4.08363 0.85026 1.86146 2.51560 2.80123 3.30106 3.33082 3.35320 3.37605 3.51147 3.75393 4.16450 4.41339 4.56473 4.78786 4.84482 4.87172 5.03142 5.12327 5.28069 5.31972 5.40210 5.43892 5.54348 5.66898 5.75508 5.79286 5.84607 5.95998 6.03488 6.16024 6.27335 6.42371 6.45074 6.52816 6.55399 6.61716 6.79802 6.97047 7.11384 7.23274 7.46948 7.70705 7.87498 7.93334 8.05918 8.25058 8.40578 8.88458 8.94527 9.56624 11.03845 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.003105 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.101580 B = 9014.138404 C =10205.288645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.259 3.741 4 H 0.117 0.883 5 N -0.746 5.746 6 C 0.710 3.290 7 O -0.589 6.589 8 N -0.615 5.615 9 C 0.128 3.872 10 C -0.124 4.124 11 C 0.051 3.949 12 C -0.515 4.515 13 H 0.053 0.947 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.123 4.123 21 C 0.112 3.888 22 C 0.169 3.831 23 N -0.375 5.375 24 O 0.080 5.920 25 C 0.178 3.822 26 C -0.061 4.061 27 N -0.474 5.474 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.037 0.963 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.738 -14.576 -10.796 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.151 3.849 4 H 0.135 0.865 5 N -0.406 5.406 6 C 0.411 3.589 7 O -0.468 6.468 8 N -0.352 5.352 9 C 0.006 3.994 10 C -0.163 4.163 11 C 0.032 3.968 12 C -0.553 4.553 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.162 4.162 21 C -0.011 4.011 22 C -0.105 4.105 23 N -0.082 5.082 24 O 0.020 5.980 25 C -0.043 4.043 26 C -0.119 4.119 27 N -0.208 5.208 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.236 0.764 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.345 -14.703 -10.886 22.644 hybrid contribution 0.774 1.085 0.673 1.493 sum 14.119 -13.618 -10.213 22.116 Atomic orbital electron populations 1.21794 0.93166 1.00526 1.04259 1.21951 0.98319 0.93978 1.02283 1.18900 0.81295 0.95373 0.89320 0.86480 1.45250 1.17176 1.62192 1.15984 1.15688 0.81606 0.78408 0.83156 1.90886 1.49603 1.65904 1.40447 1.47457 1.21403 1.52401 1.13895 1.21700 0.82416 0.93849 1.01400 1.21963 1.04250 0.91836 0.98249 1.18608 0.89698 0.95046 0.93426 1.21144 0.92592 0.95824 1.45714 0.92854 1.24957 0.95195 0.98413 0.95351 1.69830 0.97971 1.35944 1.49128 0.86679 0.77352 0.85025 0.79055 1.20364 1.21278 1.20333 1.22011 1.01311 0.92677 1.00169 1.21727 0.91565 0.99393 0.88428 1.25921 0.99849 0.99357 0.85350 1.74586 0.89873 1.20787 1.22905 1.85303 1.24382 1.62135 1.26157 1.28897 0.96082 0.94734 0.84560 1.20407 0.89721 1.05208 0.96592 1.71874 1.01308 1.20697 1.26946 0.93569 0.91362 0.91755 0.91203 0.91564 0.76398 0.90455 0.92495 0.87721 0.94440 0.95430 0.92871 0.92160 0.93020 0.91711 0.92484 0.88412 0.87782 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.46 37.16 0.31 -1.55 16 2 C -0.13 -1.51 5.59 -26.73 -0.15 -1.66 16 3 C 0.26 3.54 2.80 -69.08 -0.19 3.35 16 4 H 0.12 1.76 7.64 -51.93 -0.40 1.36 16 5 N -0.75 -11.18 4.94 -59.81 -0.30 -11.48 16 6 C 0.71 12.74 7.02 -86.93 -0.61 12.13 16 7 O -0.59 -11.81 12.58 5.29 0.07 -11.74 16 8 N -0.62 -11.34 2.98 -178.77 -0.53 -11.87 16 9 C 0.13 2.59 6.39 -3.93 -0.03 2.57 16 10 C -0.12 -2.90 5.14 -26.83 -0.14 -3.03 16 11 C 0.05 1.21 2.07 -91.73 -0.19 1.02 16 12 C -0.51 -13.80 8.56 -34.44 -0.29 -14.09 16 13 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -24.85 11.30 55.43 0.63 -24.22 16 16 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.12 -2.44 5.30 -26.62 -0.14 -2.58 16 21 C 0.11 1.88 6.44 -3.71 -0.02 1.85 16 22 C 0.17 2.20 7.01 -156.37 -1.10 1.11 16 23 N -0.37 -4.74 11.86 30.89 0.37 -4.37 16 24 O 0.08 0.84 11.31 18.11 0.20 1.05 16 25 C 0.18 1.58 8.51 -13.06 -0.11 1.47 16 26 C -0.06 -0.21 10.51 36.00 0.38 0.17 16 27 N -0.47 -5.72 11.55 -9.87 -0.11 -5.83 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.07 5.54 -51.93 -0.29 0.79 16 30 H 0.06 0.91 7.80 -51.93 -0.40 0.51 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.40 5.64 5.81 -40.82 -0.24 5.40 16 34 H 0.08 1.59 7.04 -51.93 -0.37 1.22 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.10 2.71 6.03 -51.93 -0.31 2.40 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.81 5.56 -51.93 -0.29 0.53 16 44 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -31.23 365.66 -8.47 -39.70 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.91 Total: 4.87 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.37 Total: 2.35 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.05 Total: -57.78 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.27 Total: -10.69 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.23 -8.47 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434780364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.980 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds