Wall clock time and date at job start Tue Mar 31 2020 12:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47116 * 2 1 4 4 H 1.09000 * 109.47255 * 305.00226 * 3 2 1 5 5 N 1.46504 * 109.46638 * 64.99864 * 3 2 1 6 6 C 1.34769 * 120.00303 * 274.99722 * 5 3 2 7 7 O 1.21588 * 120.00270 * 4.39458 * 6 5 3 8 8 N 1.34775 * 119.99980 * 184.39219 * 6 5 3 9 9 C 1.46934 * 120.63190 * 174.68241 * 8 6 5 10 10 C 1.52757 * 109.00714 * 233.58719 * 9 8 6 11 11 C 1.53046 * 109.38156 * 305.58310 * 10 9 8 12 12 C 1.50699 * 109.44530 * 181.25737 * 11 10 9 13 13 H 1.08008 * 119.99773 * 239.94026 * 12 11 10 14 14 C 1.37872 * 120.00330 * 59.94127 * 12 11 10 15 15 N 1.31513 * 120.00054 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 120.00345 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46929 * 59.99670 * 16 14 12 18 18 H 1.48498 * 109.47268 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46748 * 300.00070 * 16 14 12 20 20 C 1.53034 * 109.53530 * 61.24461 * 11 10 9 21 21 C 1.46924 * 120.63302 * 354.96329 * 8 6 5 22 22 C 1.50694 * 109.47125 * 185.00079 * 3 2 1 23 23 N 1.29948 * 126.28921 * 285.02544 * 22 3 2 24 24 O 1.21290 * 110.25318 * 179.97438 * 23 22 3 25 25 C 1.33642 * 109.81501 * 0.02562 * 24 23 22 26 26 C 1.50698 * 126.55725 * 180.02562 * 25 24 23 27 27 N 1.31140 * 106.89445 * 359.76519 * 25 24 23 28 28 H 1.09004 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46959 * 299.99762 * 1 2 3 30 30 H 1.08995 * 109.47085 * 60.00048 * 1 2 3 31 31 H 1.09002 * 109.46959 * 240.00238 * 2 1 3 32 32 H 1.09001 * 109.46739 * 120.00238 * 2 1 3 33 33 H 0.97000 * 119.99420 * 95.00450 * 5 3 2 34 34 H 1.09003 * 109.58340 * 353.42095 * 9 8 6 35 35 H 1.08996 * 109.58833 * 113.83994 * 9 8 6 36 36 H 1.09006 * 109.56305 * 185.55484 * 10 9 8 37 37 H 1.08996 * 109.39367 * 65.51239 * 10 9 8 38 38 H 1.08994 * 109.46029 * 301.21855 * 11 10 9 39 39 H 0.97003 * 120.00350 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.49696 * 178.67759 * 20 11 10 41 41 H 1.09001 * 109.52832 * 58.60447 * 20 11 10 42 42 H 1.08998 * 109.58471 * 246.15715 * 21 8 6 43 43 H 1.08995 * 109.58545 * 6.43819 * 21 8 6 44 44 H 1.09000 * 109.46895 * 359.96530 * 26 25 24 45 45 H 1.08998 * 109.47375 * 119.97573 * 26 25 24 46 46 H 1.09006 * 109.46984 * 239.97925 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4352 2.6643 1.3670 7 8 -0.3706 2.5633 0.4621 8 7 0.1110 3.3432 2.4853 9 6 -1.1657 4.0642 2.5798 10 6 -0.8902 5.5141 2.9741 11 6 -0.0559 5.5418 4.2568 12 6 0.1906 6.9717 4.6641 13 1 1.2012 7.3449 4.7403 14 6 -0.8740 7.8033 4.9396 15 7 -2.1046 7.3491 4.8463 16 14 -0.5684 9.5756 5.4452 17 1 0.1661 10.2793 4.3633 18 1 -1.8680 10.2537 5.6827 19 1 0.2396 9.6026 6.6908 20 6 1.2835 4.8435 4.0113 21 6 1.0303 3.3814 3.6308 22 6 3.5419 1.4443 -0.1238 23 7 4.3912 1.1444 0.8128 24 8 5.5265 1.2416 0.3970 25 6 5.5088 1.6248 -0.8831 26 6 6.7070 1.8597 -1.7664 27 7 4.2493 1.7520 -1.2255 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2719 2.1231 1.9978 34 1 -1.6717 4.0393 1.6146 35 1 -1.7948 3.5958 3.3366 36 1 -1.8344 6.0321 3.1430 37 1 -0.3419 6.0092 2.1727 38 1 -0.5944 5.0256 5.0515 39 1 -2.8537 7.9341 5.0405 40 1 1.8866 4.8842 4.9183 41 1 1.8122 5.3442 3.2002 42 1 0.5839 2.8561 4.4752 43 1 1.9718 2.9038 3.3598 44 1 7.6187 1.6687 -1.2002 45 1 6.6640 1.1877 -2.6235 46 1 6.7052 2.8928 -2.1141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434780364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:28 Heat of formation + Delta-G solvation = 17.325327 kcal Electronic energy + Delta-G solvation = -28026.756783 eV Core-core repulsion = 24146.999134 eV Total energy + Delta-G solvation = -3879.757649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.74026 -41.65351 -39.05797 -37.69685 -36.32886 -35.45643 -34.21045 -33.63618 -32.62512 -31.63038 -29.77577 -28.70246 -27.76101 -24.86520 -24.81013 -23.95890 -23.46424 -22.28569 -21.39482 -20.59327 -19.34987 -19.26377 -18.47773 -18.21501 -17.64280 -16.94557 -16.58108 -16.10166 -15.74360 -15.50992 -15.20098 -15.09972 -14.89213 -14.51344 -14.20169 -14.19089 -14.12536 -13.90771 -13.76589 -13.41918 -13.07293 -13.00787 -12.94995 -12.80527 -12.56957 -12.52207 -12.43221 -12.19773 -12.17605 -11.98403 -11.88882 -11.45229 -11.30866 -11.00826 -10.93422 -10.82497 -10.42029 -10.30429 -9.47290 -8.08338 -6.22428 0.07993 0.96287 1.41521 1.42411 1.49714 1.55963 1.87541 2.06677 2.42820 2.43146 2.72406 3.05224 3.18170 3.70903 3.83475 3.98407 4.06097 4.19866 4.26329 4.31698 4.44448 4.48095 4.52399 4.54716 4.64045 4.66352 4.70494 4.77522 4.86121 4.92890 4.94486 4.95815 5.05571 5.14598 5.15589 5.18961 5.30521 5.41565 5.43109 5.48000 5.63031 5.92454 5.97682 6.10351 6.37196 6.85593 6.88320 7.06948 7.45536 7.46251 8.94993 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.003105 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.101580 B = 9014.138404 C =10205.288645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 C 0.260 3.740 4 H 0.099 0.901 5 N -0.734 5.734 6 C 0.710 3.290 7 O -0.612 6.612 8 N -0.620 5.620 9 C 0.142 3.858 10 C -0.112 4.112 11 C 0.048 3.952 12 C -0.535 4.535 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.914 5.914 16 Si 0.950 3.050 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.115 4.115 21 C 0.118 3.882 22 C 0.156 3.844 23 N -0.388 5.388 24 O 0.082 5.918 25 C 0.194 3.806 26 C -0.061 4.061 27 N -0.506 5.506 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.019 0.981 38 H 0.006 0.994 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.307 -15.551 -11.164 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.152 3.848 4 H 0.117 0.883 5 N -0.393 5.393 6 C 0.412 3.588 7 O -0.493 6.493 8 N -0.356 5.356 9 C 0.019 3.981 10 C -0.151 4.151 11 C 0.029 3.971 12 C -0.573 4.573 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.554 5.554 16 Si 0.776 3.224 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.153 4.153 21 C -0.005 4.005 22 C -0.117 4.117 23 N -0.096 5.096 24 O 0.021 5.979 25 C -0.025 4.025 26 C -0.119 4.119 27 N -0.240 5.240 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.243 0.757 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.956 -15.696 -11.260 25.055 hybrid contribution 0.063 1.390 0.726 1.570 sum 16.019 -14.305 -10.534 23.921 Atomic orbital electron populations 1.21693 0.94073 1.01126 1.02212 1.21876 0.97253 0.93064 1.03357 1.18882 0.82209 0.95863 0.87817 0.88301 1.45124 1.16013 1.61454 1.16727 1.15733 0.82203 0.78370 0.82534 1.90873 1.50552 1.66729 1.41155 1.47393 1.21052 1.52455 1.14725 1.21358 0.83528 0.92150 1.01078 1.21721 1.02376 0.93501 0.97503 1.18573 0.91747 0.94084 0.92671 1.21541 0.92526 0.97476 1.45772 0.93090 1.25698 0.95072 1.02183 0.95507 1.69962 0.98557 1.37106 1.49738 0.85733 0.77264 0.80521 0.78848 1.20125 1.21043 1.19517 1.21858 0.98829 0.94169 1.00444 1.21765 0.92756 0.97592 0.88346 1.25731 0.99449 1.00428 0.86100 1.74559 0.90412 1.21300 1.23281 1.85273 1.23439 1.62170 1.26971 1.29924 0.96601 0.91981 0.84032 1.20809 0.88369 1.06214 0.96501 1.71877 1.02670 1.22366 1.27109 0.91623 0.93907 0.93195 0.89543 0.90912 0.75726 0.90994 0.92038 0.90612 0.96191 0.97618 0.92983 0.90941 0.93952 0.90399 0.89369 0.85721 0.85940 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 8.46 71.98 0.61 -2.86 16 2 C -0.12 -2.65 5.59 30.60 0.17 -2.48 16 3 C 0.26 6.93 2.80 44.24 0.12 7.06 16 4 H 0.10 3.01 7.64 -2.39 -0.02 3.00 16 5 N -0.73 -21.35 4.94 -461.42 -2.28 -23.62 16 6 C 0.71 25.31 7.02 179.06 1.26 26.57 16 7 O -0.61 -24.85 12.58 -3.99 -0.05 -24.90 16 8 N -0.62 -22.63 2.98 -837.76 -2.50 -25.12 16 9 C 0.14 5.83 6.39 86.22 0.55 6.39 16 10 C -0.11 -5.39 5.14 30.53 0.16 -5.24 16 11 C 0.05 2.32 2.07 -11.51 -0.02 2.30 16 12 C -0.54 -29.06 8.56 25.60 0.22 -28.84 16 13 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 14 C 0.01 0.78 5.30 84.65 0.45 1.23 16 15 N -0.91 -52.17 11.30 21.45 0.24 -51.93 16 16 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C -0.11 -4.46 5.30 30.67 0.16 -4.30 16 21 C 0.12 3.77 6.44 86.36 0.56 4.33 16 22 C 0.16 3.89 7.01 138.46 0.97 4.86 16 23 N -0.39 -9.16 11.86 -60.35 -0.72 -9.88 16 24 O 0.08 1.55 11.31 74.86 0.85 2.40 16 25 C 0.19 3.00 8.51 88.38 0.75 3.75 16 26 C -0.06 -0.20 10.51 71.24 0.75 0.55 16 27 N -0.51 -11.50 11.55 -303.22 -3.50 -15.01 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.04 1.33 5.54 -2.39 -0.01 1.32 16 30 H 0.05 1.42 7.80 -2.39 -0.02 1.40 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.40 10.75 5.81 -92.71 -0.54 10.21 16 34 H 0.07 3.03 7.04 -2.39 -0.02 3.01 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.08 4.09 6.03 -2.38 -0.01 4.08 16 37 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.09 2.30 5.56 -2.39 -0.01 2.28 16 44 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 Total: -1.00 -69.09 365.66 1.24 -67.85 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.46 Total: 21.42 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.70 Total: 13.31 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -8.75 Total: -125.56 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.80 Total: -22.50 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.09 1.24 -67.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434780364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.174 kcal (2) G-P(sol) polarization free energy of solvation -69.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds