Wall clock time and date at job start Tue Mar 31 2020 12:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46934 * 2 1 4 4 H 1.08996 * 109.47163 * 55.00076 * 3 2 1 5 5 N 1.46500 * 109.47073 * 294.99656 * 3 2 1 6 6 C 1.34775 * 119.99604 * 85.00053 * 5 3 2 7 7 O 1.21589 * 120.00339 * 355.69821 * 6 5 3 8 8 N 1.34785 * 119.99927 * 175.69948 * 6 5 3 9 9 C 1.46922 * 120.63213 * 184.96734 * 8 6 5 10 10 C 1.52758 * 109.00523 * 233.58178 * 9 8 6 11 11 C 1.53042 * 109.38360 * 305.58673 * 10 9 8 12 12 C 1.50705 * 109.44859 * 181.25476 * 11 10 9 13 13 H 1.07991 * 119.99991 * 239.93696 * 12 11 10 14 14 C 1.37877 * 119.99931 * 59.93990 * 12 11 10 15 15 N 1.31514 * 120.00241 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99939 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47547 * 89.99815 * 16 14 12 18 18 H 1.48501 * 109.47334 * 209.99707 * 16 14 12 19 19 H 1.48496 * 109.46987 * 329.99671 * 16 14 12 20 20 C 1.53035 * 109.53765 * 61.24152 * 11 10 9 21 21 C 1.46931 * 120.62594 * 5.24076 * 8 6 5 22 22 C 1.50696 * 109.46775 * 174.99876 * 3 2 1 23 23 N 1.29947 * 126.28932 * 74.69096 * 22 3 2 24 24 O 1.21299 * 110.25636 * 179.84093 * 23 22 3 25 25 C 1.33653 * 109.80526 * 0.42419 * 24 23 22 26 26 C 1.50696 * 126.54757 * 179.71941 * 25 24 23 27 27 N 1.31129 * 106.89889 * 359.73769 * 25 24 23 28 28 H 1.09003 * 109.47448 * 60.00173 * 1 2 3 29 29 H 1.08996 * 109.47659 * 300.00146 * 1 2 3 30 30 H 1.09000 * 109.47582 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46741 * 119.99613 * 2 1 3 32 32 H 1.09001 * 109.46984 * 240.00059 * 2 1 3 33 33 H 0.96993 * 120.00074 * 265.00376 * 5 3 2 34 34 H 1.09002 * 109.58379 * 353.41460 * 9 8 6 35 35 H 1.08995 * 109.58975 * 113.84235 * 9 8 6 36 36 H 1.09003 * 109.56523 * 185.55164 * 10 9 8 37 37 H 1.09002 * 109.38896 * 65.51320 * 10 9 8 38 38 H 1.08995 * 109.45521 * 301.21801 * 11 10 9 39 39 H 0.96997 * 120.00441 * 180.02562 * 15 14 12 40 40 H 1.08994 * 109.49710 * 178.68360 * 20 11 10 41 41 H 1.09002 * 109.52380 * 58.60397 * 20 11 10 42 42 H 1.09000 * 109.58298 * 246.15947 * 21 8 6 43 43 H 1.08992 * 109.58651 * 6.44348 * 21 8 6 44 44 H 1.09000 * 109.47240 * 270.02288 * 26 25 24 45 45 H 1.09006 * 109.47520 * 30.02551 * 26 25 24 46 46 H 1.09000 * 109.47172 * 150.02552 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6643 -1.3670 7 8 -0.3701 2.5647 -0.4614 8 7 0.1103 3.3417 -2.4860 9 6 -1.1698 4.0564 -2.5835 10 6 -1.9014 3.5968 -3.8433 11 6 -0.9862 3.7774 -5.0566 12 6 -1.7175 3.3533 -6.3042 13 1 -1.3268 2.5514 -6.9129 14 6 -2.8854 3.9891 -6.6686 15 7 -3.3615 4.9654 -5.9271 16 14 -3.7921 3.4630 -8.2146 17 1 -4.7698 2.3975 -7.8768 18 1 -4.5099 4.6294 -8.7887 19 1 -2.8176 2.9438 -9.2075 20 6 0.2682 2.9180 -4.8839 21 6 1.0270 3.3745 -3.6338 22 6 3.5418 1.4443 0.1239 23 7 4.3910 1.1395 -0.8113 24 8 5.5265 1.2416 -0.3971 25 6 5.5087 1.6245 0.8833 26 6 6.7069 1.8593 1.7665 27 7 4.2494 1.7562 1.2243 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.2719 2.1231 -1.9978 34 1 -1.7793 3.8352 -1.7074 35 1 -0.9859 5.1291 -2.6420 36 1 -2.8053 4.1909 -3.9777 37 1 -2.1690 2.5449 -3.7429 38 1 -0.6996 4.8255 -5.1423 39 1 -4.1833 5.4125 -6.1832 40 1 0.9085 3.0291 -5.7589 41 1 -0.0189 1.8723 -4.7736 42 1 1.3937 4.3906 -3.7796 43 1 1.8675 2.7057 -3.4494 44 1 6.9724 0.9315 2.2731 45 1 7.5470 2.1942 1.1578 46 1 6.4683 2.6223 2.5074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434780369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:32 Heat of formation + Delta-G solvation = 38.121566 kcal Electronic energy + Delta-G solvation = -27987.081223 eV Core-core repulsion = 24108.225367 eV Total energy + Delta-G solvation = -3878.855856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.92488 -40.24139 -37.63319 -36.47182 -35.35706 -33.68191 -33.39978 -32.23019 -30.91185 -30.02985 -29.26116 -27.49962 -25.99441 -23.98461 -23.10851 -22.58437 -22.32718 -20.98721 -20.06025 -19.10323 -18.45078 -17.99888 -17.34757 -16.44422 -16.26620 -15.53074 -15.14100 -14.76326 -14.57145 -14.50740 -13.92006 -13.76348 -13.62344 -13.48878 -13.19011 -12.91884 -12.75830 -12.60165 -12.43285 -12.20619 -12.01605 -11.82179 -11.55272 -11.45417 -11.34643 -11.12026 -10.94248 -10.78686 -10.65162 -10.42396 -10.22827 -10.05237 -9.74359 -9.54996 -9.18606 -9.03517 -8.89506 -8.36102 -7.91455 -6.01004 -4.07615 0.81922 1.83330 2.48441 2.79299 3.29419 3.29884 3.36584 3.39108 3.52882 3.72581 4.16687 4.42013 4.54257 4.76338 4.79057 4.88643 5.03206 5.12110 5.28695 5.31892 5.39333 5.42641 5.56273 5.66195 5.76059 5.80844 5.85383 6.02207 6.04467 6.20514 6.27024 6.43265 6.45608 6.53833 6.61235 6.63015 6.80333 6.98472 7.11982 7.24344 7.47644 7.71815 7.84777 7.94248 8.06944 8.24915 8.41373 8.88586 8.95608 9.57383 11.04409 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.002746 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.527426 B =10196.009291 C =10609.382977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.259 3.741 4 H 0.117 0.883 5 N -0.746 5.746 6 C 0.709 3.291 7 O -0.589 6.589 8 N -0.615 5.615 9 C 0.127 3.873 10 C -0.124 4.124 11 C 0.050 3.950 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.123 4.123 21 C 0.112 3.888 22 C 0.168 3.832 23 N -0.374 5.374 24 O 0.080 5.920 25 C 0.177 3.823 26 C -0.062 4.062 27 N -0.474 5.474 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.398 0.602 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.038 0.962 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.142 -6.279 14.568 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C 0.151 3.849 4 H 0.135 0.865 5 N -0.406 5.406 6 C 0.411 3.589 7 O -0.468 6.468 8 N -0.352 5.352 9 C 0.005 3.995 10 C -0.162 4.162 11 C 0.031 3.969 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.161 4.161 21 C -0.011 4.011 22 C -0.105 4.105 23 N -0.080 5.080 24 O 0.020 5.980 25 C -0.044 4.044 26 C -0.120 4.120 27 N -0.208 5.208 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.236 0.764 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.796 -6.325 14.692 23.928 hybrid contribution 0.052 -0.277 -1.272 1.303 sum 17.848 -6.602 13.420 23.286 Atomic orbital electron populations 1.21794 0.93055 1.00691 1.04280 1.21956 0.98418 0.93913 1.02291 1.18903 0.81205 0.95492 0.89254 0.86484 1.45251 1.17273 1.62153 1.15933 1.15695 0.81585 0.78334 0.83278 1.90889 1.49515 1.65738 1.40628 1.47459 1.21269 1.53185 1.13242 1.21702 0.82439 0.94434 1.00883 1.21951 1.01571 1.00376 0.92347 1.18621 0.89930 0.94823 0.93496 1.21178 1.07785 1.18196 1.07946 0.92774 1.24960 0.97308 0.94900 0.96801 1.69839 1.21700 1.23275 1.38082 0.86620 0.79911 0.78106 0.83507 1.20732 1.21255 1.20013 1.22002 0.99139 1.00678 0.94279 1.21727 0.91440 1.00629 0.87317 1.25940 0.99877 0.99260 0.85446 1.74611 0.89850 1.20561 1.22997 1.85309 1.24378 1.62189 1.26108 1.28895 0.96082 0.94819 0.84594 1.20409 0.89812 1.05035 0.96714 1.71887 1.01292 1.20739 1.26899 0.91213 0.91823 0.93491 0.91247 0.91503 0.76433 0.90377 0.92559 0.87786 0.94330 0.95488 0.92948 0.92152 0.92862 0.91915 0.92436 0.87962 0.88312 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.47 37.16 0.31 -1.68 16 2 C -0.13 -1.58 5.59 -26.73 -0.15 -1.73 16 3 C 0.26 3.51 2.80 -69.08 -0.19 3.32 16 4 H 0.12 1.71 7.64 -51.93 -0.40 1.32 16 5 N -0.75 -11.10 4.93 -59.81 -0.29 -11.39 16 6 C 0.71 12.72 7.02 -86.91 -0.61 12.11 16 7 O -0.59 -11.83 12.57 5.29 0.07 -11.76 16 8 N -0.62 -11.33 2.98 -178.77 -0.53 -11.86 16 9 C 0.13 2.57 6.41 -3.94 -0.03 2.55 16 10 C -0.12 -2.88 5.14 -26.83 -0.14 -3.02 16 11 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 12 C -0.51 -13.73 8.56 -34.44 -0.29 -14.03 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.86 11.30 55.43 0.63 -24.24 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 21 C 0.11 1.88 6.39 -3.71 -0.02 1.85 16 22 C 0.17 2.13 7.01 -156.37 -1.10 1.04 16 23 N -0.37 -4.63 11.87 30.90 0.37 -4.26 16 24 O 0.08 0.81 11.31 18.08 0.20 1.02 16 25 C 0.18 1.48 8.51 -13.06 -0.11 1.37 16 26 C -0.06 -0.17 10.51 36.00 0.38 0.21 16 27 N -0.47 -5.46 11.55 -9.86 -0.11 -5.58 16 28 H 0.07 1.19 5.55 -51.93 -0.29 0.91 16 29 H 0.06 0.94 7.80 -51.93 -0.40 0.53 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.40 5.58 5.85 -40.82 -0.24 5.34 16 34 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 2.69 6.03 -51.93 -0.31 2.38 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.82 5.65 -51.93 -0.29 0.53 16 44 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 46 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -31.23 365.70 -8.47 -39.70 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.91 Total: 4.80 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.37 Total: 1.99 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.05 Total: -57.33 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.27 Total: -10.75 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.23 -8.47 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434780369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.824 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds