Wall clock time and date at job start Tue Mar 31 2020 12:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46934 * 2 1 4 4 H 1.08996 * 109.47163 * 55.00076 * 3 2 1 5 5 N 1.46500 * 109.47073 * 294.99656 * 3 2 1 6 6 C 1.34775 * 119.99604 * 85.00053 * 5 3 2 7 7 O 1.21589 * 120.00339 * 355.69821 * 6 5 3 8 8 N 1.34785 * 119.99927 * 175.69948 * 6 5 3 9 9 C 1.46922 * 120.63213 * 184.96734 * 8 6 5 10 10 C 1.52758 * 109.00523 * 233.58178 * 9 8 6 11 11 C 1.53042 * 109.38360 * 305.58673 * 10 9 8 12 12 C 1.50705 * 109.44859 * 181.25476 * 11 10 9 13 13 H 1.07991 * 119.99991 * 239.93696 * 12 11 10 14 14 C 1.37877 * 119.99931 * 59.93990 * 12 11 10 15 15 N 1.31514 * 120.00241 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99939 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47547 * 89.99815 * 16 14 12 18 18 H 1.48501 * 109.47334 * 209.99707 * 16 14 12 19 19 H 1.48496 * 109.46987 * 329.99671 * 16 14 12 20 20 C 1.53035 * 109.53765 * 61.24152 * 11 10 9 21 21 C 1.46931 * 120.62594 * 5.24076 * 8 6 5 22 22 C 1.50696 * 109.46775 * 174.99876 * 3 2 1 23 23 N 1.29947 * 126.28932 * 74.69096 * 22 3 2 24 24 O 1.21299 * 110.25636 * 179.84093 * 23 22 3 25 25 C 1.33653 * 109.80526 * 0.42419 * 24 23 22 26 26 C 1.50696 * 126.54757 * 179.71941 * 25 24 23 27 27 N 1.31129 * 106.89889 * 359.73769 * 25 24 23 28 28 H 1.09003 * 109.47448 * 60.00173 * 1 2 3 29 29 H 1.08996 * 109.47659 * 300.00146 * 1 2 3 30 30 H 1.09000 * 109.47582 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46741 * 119.99613 * 2 1 3 32 32 H 1.09001 * 109.46984 * 240.00059 * 2 1 3 33 33 H 0.96993 * 120.00074 * 265.00376 * 5 3 2 34 34 H 1.09002 * 109.58379 * 353.41460 * 9 8 6 35 35 H 1.08995 * 109.58975 * 113.84235 * 9 8 6 36 36 H 1.09003 * 109.56523 * 185.55164 * 10 9 8 37 37 H 1.09002 * 109.38896 * 65.51320 * 10 9 8 38 38 H 1.08995 * 109.45521 * 301.21801 * 11 10 9 39 39 H 0.96997 * 120.00441 * 180.02562 * 15 14 12 40 40 H 1.08994 * 109.49710 * 178.68360 * 20 11 10 41 41 H 1.09002 * 109.52380 * 58.60397 * 20 11 10 42 42 H 1.09000 * 109.58298 * 246.15947 * 21 8 6 43 43 H 1.08992 * 109.58651 * 6.44348 * 21 8 6 44 44 H 1.09000 * 109.47240 * 270.02288 * 26 25 24 45 45 H 1.09006 * 109.47520 * 30.02551 * 26 25 24 46 46 H 1.09000 * 109.47172 * 150.02552 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6643 -1.3670 7 8 -0.3701 2.5647 -0.4614 8 7 0.1103 3.3417 -2.4860 9 6 -1.1698 4.0564 -2.5835 10 6 -1.9014 3.5968 -3.8433 11 6 -0.9862 3.7774 -5.0566 12 6 -1.7175 3.3533 -6.3042 13 1 -1.3268 2.5514 -6.9129 14 6 -2.8854 3.9891 -6.6686 15 7 -3.3615 4.9654 -5.9271 16 14 -3.7921 3.4630 -8.2146 17 1 -4.7698 2.3975 -7.8768 18 1 -4.5099 4.6294 -8.7887 19 1 -2.8176 2.9438 -9.2075 20 6 0.2682 2.9180 -4.8839 21 6 1.0270 3.3745 -3.6338 22 6 3.5418 1.4443 0.1239 23 7 4.3910 1.1395 -0.8113 24 8 5.5265 1.2416 -0.3971 25 6 5.5087 1.6245 0.8833 26 6 6.7069 1.8593 1.7665 27 7 4.2494 1.7562 1.2243 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.2719 2.1231 -1.9978 34 1 -1.7793 3.8352 -1.7074 35 1 -0.9859 5.1291 -2.6420 36 1 -2.8053 4.1909 -3.9777 37 1 -2.1690 2.5449 -3.7429 38 1 -0.6996 4.8255 -5.1423 39 1 -4.1833 5.4125 -6.1832 40 1 0.9085 3.0291 -5.7589 41 1 -0.0189 1.8723 -4.7736 42 1 1.3937 4.3906 -3.7796 43 1 1.8675 2.7057 -3.4494 44 1 6.9724 0.9315 2.2731 45 1 7.5470 2.1942 1.1578 46 1 6.4683 2.6223 2.5074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434780369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:31 Heat of formation + Delta-G solvation = 17.125036 kcal Electronic energy + Delta-G solvation = -27987.991701 eV Core-core repulsion = 24108.225367 eV Total energy + Delta-G solvation = -3879.766334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.73604 -41.64977 -39.05265 -37.68910 -36.32365 -35.45601 -34.20425 -33.65041 -32.61304 -31.62330 -29.76542 -28.70559 -27.75954 -24.86300 -24.80300 -23.95292 -23.47112 -22.27260 -21.39147 -20.61201 -19.34224 -19.25689 -18.47348 -18.20956 -17.63088 -16.88521 -16.57400 -16.22410 -15.76617 -15.48009 -15.15112 -14.99094 -14.89913 -14.55076 -14.29366 -14.15951 -14.10814 -13.88550 -13.75041 -13.41666 -13.06820 -13.02837 -12.95031 -12.82198 -12.58894 -12.47880 -12.43968 -12.18924 -12.17837 -11.97130 -11.89970 -11.44179 -11.30179 -10.99623 -10.94101 -10.80069 -10.41571 -10.31241 -9.47101 -8.08009 -6.21760 0.08945 0.97190 1.40540 1.42289 1.51166 1.56292 1.88457 2.05506 2.42813 2.44443 2.72994 3.06221 3.18613 3.71046 3.82859 3.98633 4.05360 4.20298 4.27498 4.31474 4.44312 4.47833 4.52175 4.55061 4.62547 4.68652 4.71275 4.75768 4.86567 4.92745 4.94739 4.96257 5.05119 5.15999 5.17142 5.19693 5.30508 5.41391 5.44340 5.47600 5.63871 5.92850 5.98690 6.11414 6.37984 6.85848 6.89192 7.08041 7.46127 7.46649 8.95516 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.002746 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.527426 B =10196.009291 C =10609.382977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.261 3.739 4 H 0.103 0.897 5 N -0.733 5.733 6 C 0.710 3.290 7 O -0.613 6.613 8 N -0.620 5.620 9 C 0.141 3.859 10 C -0.111 4.111 11 C 0.047 3.953 12 C -0.532 4.532 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.915 5.915 16 Si 0.950 3.050 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.268 1.268 20 C -0.114 4.114 21 C 0.118 3.882 22 C 0.157 3.843 23 N -0.389 5.389 24 O 0.083 5.917 25 C 0.194 3.806 26 C -0.062 4.062 27 N -0.504 5.504 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.020 0.980 38 H 0.005 0.995 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.852 -7.173 15.060 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C 0.154 3.846 4 H 0.121 0.879 5 N -0.393 5.393 6 C 0.411 3.589 7 O -0.493 6.493 8 N -0.356 5.356 9 C 0.018 3.982 10 C -0.150 4.150 11 C 0.028 3.972 12 C -0.570 4.570 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.554 5.554 16 Si 0.776 3.224 17 H -0.206 1.206 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.152 4.152 21 C -0.005 4.005 22 C -0.116 4.116 23 N -0.096 5.096 24 O 0.022 5.978 25 C -0.025 4.025 26 C -0.119 4.119 27 N -0.238 5.238 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.039 0.961 38 H 0.023 0.977 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 20.549 -7.234 15.191 26.559 hybrid contribution -0.704 -0.008 -1.364 1.535 sum 19.845 -7.242 13.827 25.248 Atomic orbital electron populations 1.21688 0.94324 1.01010 1.02142 1.21882 0.97026 0.93512 1.03268 1.18854 0.82303 0.95595 0.87892 0.87876 1.45116 1.16119 1.61322 1.16704 1.15741 0.82198 0.78187 0.82735 1.90873 1.50503 1.66523 1.41441 1.47396 1.20823 1.53304 1.14101 1.21363 0.83233 0.94755 0.98873 1.21705 1.00830 0.98591 0.93907 1.18591 0.91678 0.94228 0.92701 1.21562 1.08316 1.18086 1.09053 0.93053 1.25697 0.98202 0.95051 0.99574 1.69969 1.21970 1.24104 1.39378 0.85680 0.78729 0.77680 0.80297 1.20620 1.20924 1.19269 1.21849 0.97716 0.99221 0.96447 1.21762 0.91372 1.02100 0.85226 1.25686 0.99331 1.00379 0.86249 1.74587 0.90451 1.21126 1.23455 1.85279 1.23366 1.62227 1.26968 1.29932 0.96607 0.91981 0.84022 1.20816 0.88227 1.06493 0.96395 1.71890 1.02612 1.22386 1.26936 0.94313 0.92863 0.91939 0.89378 0.91263 0.75733 0.90928 0.92083 0.90712 0.96065 0.97695 0.93022 0.90949 0.93685 0.90675 0.89285 0.85628 0.85777 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.47 71.98 0.61 -3.17 16 2 C -0.12 -2.82 5.59 30.60 0.17 -2.65 16 3 C 0.26 6.87 2.80 44.25 0.12 7.00 16 4 H 0.10 3.02 7.64 -2.39 -0.02 3.00 16 5 N -0.73 -21.15 4.93 -461.40 -2.28 -23.42 16 6 C 0.71 25.28 7.02 179.05 1.26 26.54 16 7 O -0.61 -24.97 12.57 -4.00 -0.05 -25.02 16 8 N -0.62 -22.63 2.98 -837.75 -2.50 -25.13 16 9 C 0.14 5.80 6.41 86.22 0.55 6.35 16 10 C -0.11 -5.36 5.14 30.53 0.16 -5.20 16 11 C 0.05 2.26 2.07 -11.51 -0.02 2.24 16 12 C -0.53 -28.90 8.56 25.60 0.22 -28.68 16 13 H 0.05 2.75 7.74 -2.92 -0.02 2.72 16 14 C 0.01 0.74 5.30 84.65 0.45 1.19 16 15 N -0.91 -52.28 11.30 21.45 0.24 -52.04 16 16 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 C -0.11 -4.42 5.30 30.67 0.16 -4.26 16 21 C 0.12 3.77 6.39 86.36 0.55 4.33 16 22 C 0.16 3.76 7.01 138.46 0.97 4.73 16 23 N -0.39 -8.93 11.87 -60.30 -0.72 -9.65 16 24 O 0.08 1.48 11.31 74.75 0.85 2.32 16 25 C 0.19 2.75 8.51 88.38 0.75 3.50 16 26 C -0.06 -0.12 10.51 71.23 0.75 0.63 16 27 N -0.50 -10.78 11.55 -303.17 -3.50 -14.28 16 28 H 0.04 1.33 5.55 -2.39 -0.01 1.32 16 29 H 0.05 1.58 7.80 -2.39 -0.02 1.56 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.40 10.63 5.85 -92.71 -0.54 10.09 16 34 H 0.07 3.06 6.99 -2.39 -0.02 3.05 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 4.04 6.03 -2.39 -0.01 4.03 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.09 2.31 5.65 -2.39 -0.01 2.30 16 44 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 45 H 0.12 -0.32 8.14 -2.38 -0.02 -0.34 16 46 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -69.26 365.70 1.23 -68.03 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.46 Total: 21.00 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 6.70 Total: 12.54 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -8.75 Total: -124.51 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.79 Total: -22.69 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -69.26 1.23 -68.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434780369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.155 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds