Wall clock time and date at job start Tue Mar 31 2020 12:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46724 * 2 1 4 4 H 1.09006 * 109.47004 * 55.00464 * 3 2 1 5 5 N 1.46490 * 109.47526 * 294.99992 * 3 2 1 6 6 C 1.34786 * 119.99946 * 84.99810 * 5 3 2 7 7 O 1.21586 * 119.99832 * 355.70018 * 6 5 3 8 8 N 1.34773 * 120.00092 * 175.69577 * 6 5 3 9 9 C 1.46929 * 120.62981 * 4.96072 * 8 6 5 10 10 C 1.53624 * 108.54084 * 126.36723 * 9 8 6 11 11 C 1.53040 * 109.24451 * 54.85832 * 10 9 8 12 12 C 1.53039 * 109.53424 * 298.50881 * 11 10 9 13 13 H 1.08997 * 109.50341 * 301.41571 * 12 11 10 14 14 C 1.50697 * 109.52264 * 181.33068 * 12 11 10 15 15 H 1.08006 * 120.00039 * 0.14467 * 14 12 11 16 16 C 1.37879 * 120.00379 * 180.15031 * 14 12 11 17 17 N 1.31515 * 119.99732 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00350 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47062 * 59.99485 * 18 16 14 20 20 H 1.48495 * 109.46996 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46750 * 299.99587 * 18 16 14 22 22 C 1.46920 * 120.63214 * 185.23724 * 8 6 5 23 23 C 1.50701 * 109.46908 * 175.00112 * 3 2 1 24 24 N 1.29948 * 126.28874 * 74.97193 * 23 3 2 25 25 O 1.21301 * 110.24888 * 179.97438 * 24 23 3 26 26 C 1.33631 * 109.81470 * 0.02562 * 25 24 23 27 27 C 1.50707 * 126.55403 * 179.97438 * 26 25 24 28 28 N 1.31133 * 106.90138 * 0.22446 * 26 25 24 29 29 H 1.08997 * 109.47436 * 59.99813 * 1 2 3 30 30 H 1.09006 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46971 * 299.99768 * 1 2 3 32 32 H 1.08993 * 109.47048 * 240.00341 * 2 1 3 33 33 H 1.08997 * 109.46962 * 119.99952 * 2 1 3 34 34 H 0.96997 * 120.00410 * 265.00678 * 5 3 2 35 35 H 1.08997 * 109.58680 * 246.20028 * 9 8 6 36 36 H 1.09003 * 109.58703 * 6.62871 * 9 8 6 37 37 H 1.09001 * 109.63824 * 294.86476 * 10 9 8 38 38 H 1.09006 * 109.43458 * 174.72727 * 10 9 8 39 39 H 1.08998 * 109.46216 * 178.49234 * 11 10 9 40 40 H 1.08997 * 109.44779 * 58.52581 * 11 10 9 41 41 H 0.97001 * 120.00422 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.58804 * 353.38118 * 22 8 6 43 43 H 1.09007 * 109.58487 * 113.80122 * 22 8 6 44 44 H 1.09001 * 109.46881 * 0.02591 * 27 26 25 45 45 H 1.08994 * 109.47165 * 240.02896 * 27 26 25 46 46 H 1.08994 * 109.47262 * 120.02340 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 7 1.6524 2.0976 -1.2517 6 6 0.4350 2.6644 -1.3668 7 8 -0.3702 2.5646 -0.4613 8 7 0.1102 3.3419 -2.4857 9 6 1.0295 3.3800 -3.6312 10 6 0.2686 2.9199 -4.8839 11 6 -0.9858 3.7796 -5.0563 12 6 -1.9012 3.5982 -3.8433 13 1 -2.1685 2.5463 -3.7433 14 6 -3.1510 4.4195 -4.0284 15 1 -3.2814 5.0104 -4.9231 16 6 -4.1281 4.4168 -3.0556 17 7 -3.9695 3.6971 -1.9664 18 14 -5.6778 5.4343 -3.2853 19 1 -6.3885 4.9843 -4.5089 20 1 -6.5637 5.2600 -2.1064 21 1 -5.3130 6.8672 -3.4234 22 6 -1.1672 4.0614 -2.5810 23 6 3.5419 1.4444 0.1238 24 7 4.3912 1.1445 -0.8129 25 8 5.5265 1.2427 -0.3973 26 6 5.5088 1.6256 0.8828 27 6 6.7071 1.8615 1.7658 28 7 4.2494 1.7518 1.2256 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2718 2.1232 -1.9977 35 1 1.3930 4.3976 -3.7743 36 1 1.8708 2.7118 -3.4470 37 1 -0.0193 1.8743 -4.7742 38 1 0.9091 3.0314 -5.7588 39 1 -1.5144 3.4737 -5.9591 40 1 -0.6986 4.8276 -5.1411 41 1 -4.6570 3.6948 -1.2821 42 1 -1.7759 3.8431 -1.7035 43 1 -0.9792 5.1335 -2.6402 44 1 7.6188 1.6714 1.1994 45 1 6.6650 1.1892 2.6227 46 1 6.7043 2.8944 2.1139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469225260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:35 Heat of formation + Delta-G solvation = 39.583642 kcal Electronic energy + Delta-G solvation = -28292.983489 eV Core-core repulsion = 24414.191033 eV Total energy + Delta-G solvation = -3878.792456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.85120 -39.98247 -37.51618 -36.33205 -35.19296 -33.54717 -33.25407 -32.16597 -31.24687 -29.68394 -29.20223 -27.36871 -25.03471 -24.30536 -23.86526 -22.45484 -21.81391 -20.94301 -19.89856 -19.00569 -18.37940 -17.88225 -17.22870 -16.30632 -16.10100 -15.29212 -15.00123 -14.66774 -14.54449 -14.17656 -13.86782 -13.72003 -13.62583 -13.50889 -13.17303 -12.86201 -12.65626 -12.53611 -12.35464 -12.13761 -11.89302 -11.83729 -11.42265 -11.29529 -11.23834 -10.95699 -10.87658 -10.63665 -10.50604 -10.38955 -10.19746 -10.13514 -9.84459 -9.40193 -9.06942 -8.93322 -8.79823 -8.38725 -7.63657 -5.95023 -4.04129 0.88940 1.92503 2.54973 2.97744 3.34406 3.40425 3.41562 3.45653 3.78074 3.85680 4.36383 4.47699 4.63464 4.81752 4.85676 5.04346 5.12399 5.23606 5.29352 5.34553 5.44951 5.50597 5.52833 5.62753 5.74449 5.77141 5.96605 5.99747 6.18285 6.20415 6.33415 6.41058 6.60152 6.68118 6.69096 6.82050 6.86656 7.01206 7.05298 7.36325 7.50042 7.76471 7.92502 7.95601 8.08779 8.44040 8.55483 8.98894 9.22165 9.61057 11.09748 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021303 B = 0.003095 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.078747 B = 9045.164451 C = 9607.175007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.259 3.741 4 H 0.117 0.883 5 N -0.751 5.751 6 C 0.703 3.297 7 O -0.570 6.570 8 N -0.620 5.620 9 C 0.114 3.886 10 C -0.132 4.132 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.877 5.877 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.129 3.871 23 C 0.172 3.828 24 N -0.376 5.376 25 O 0.078 5.922 26 C 0.175 3.825 27 C -0.060 4.060 28 N -0.474 5.474 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.394 0.606 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.125 0.875 43 H 0.039 0.961 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.931 -5.349 4.624 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.151 3.849 4 H 0.135 0.865 5 N -0.411 5.411 6 C 0.405 3.595 7 O -0.446 6.446 8 N -0.357 5.357 9 C -0.010 4.010 10 C -0.170 4.170 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.515 5.515 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.009 3.991 23 C -0.102 4.102 24 N -0.083 5.083 25 O 0.019 5.981 26 C -0.046 4.046 27 C -0.119 4.119 28 N -0.208 5.208 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.231 0.769 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.057 0.943 44 H 0.115 0.885 45 H 0.122 0.878 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.617 -5.578 4.951 21.924 hybrid contribution -0.226 0.558 -0.501 0.783 sum 20.391 -5.021 4.450 21.466 Atomic orbital electron populations 1.21804 0.92731 1.00599 1.04729 1.21952 0.98615 0.93882 1.01969 1.18904 0.80939 0.95519 0.89585 0.86508 1.45320 1.17463 1.62710 1.15633 1.15804 0.81363 0.78598 0.83713 1.90954 1.48958 1.64581 1.40151 1.47792 1.21803 1.53442 1.12624 1.21596 0.91697 1.00292 0.87430 1.22010 0.98303 1.00745 0.95976 1.21618 0.94745 0.97918 1.00478 1.18971 0.92237 0.97628 0.89052 0.95290 1.21030 1.01891 1.28637 1.04525 0.92499 1.25050 0.98244 0.95379 0.95313 1.69883 1.34308 1.39279 1.07995 0.86672 0.83196 0.80714 0.77494 1.20345 1.21275 1.20301 1.22213 0.79776 0.92246 1.04888 1.26010 0.99983 0.98972 0.85187 1.74592 0.89841 1.20910 1.22990 1.85298 1.24468 1.62218 1.26158 1.28892 0.96104 0.94933 0.84631 1.20391 0.89707 1.05136 0.96616 1.71886 1.01273 1.20669 1.26949 0.90905 0.93659 0.91719 0.91748 0.91457 0.76949 0.92142 0.92291 0.92126 0.92381 0.93058 0.93234 0.92620 0.85731 0.94297 0.88485 0.87806 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.47 37.16 0.31 -2.02 16 2 C -0.12 -1.76 5.59 -26.73 -0.15 -1.90 16 3 C 0.26 3.90 2.80 -69.09 -0.19 3.71 16 4 H 0.12 1.94 7.64 -51.93 -0.40 1.55 16 5 N -0.75 -12.27 4.93 -59.81 -0.29 -12.56 16 6 C 0.70 14.38 7.02 -86.91 -0.61 13.77 16 7 O -0.57 -13.63 12.57 5.29 0.07 -13.57 16 8 N -0.62 -12.69 2.97 -178.23 -0.53 -13.22 16 9 C 0.11 1.86 6.42 -3.48 -0.02 1.83 16 10 C -0.13 -2.19 6.10 -26.39 -0.16 -2.35 16 11 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 12 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.52 -14.22 8.57 -34.44 -0.29 -14.51 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -25.66 11.39 55.43 0.63 -25.03 16 18 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.13 3.15 5.41 -3.71 -0.02 3.13 16 23 C 0.17 2.36 7.01 -156.37 -1.10 1.26 16 24 N -0.38 -4.89 11.86 30.90 0.37 -4.52 16 25 O 0.08 0.83 11.31 18.13 0.20 1.04 16 26 C 0.17 1.59 8.51 -13.05 -0.11 1.47 16 27 C -0.06 -0.20 10.51 36.01 0.38 0.17 16 28 N -0.47 -5.92 11.55 -9.87 -0.11 -6.03 16 29 H 0.07 1.45 5.55 -51.93 -0.29 1.16 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.14 7.80 -51.93 -0.40 0.73 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.39 5.84 5.84 -40.82 -0.24 5.60 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.82 5.65 -51.93 -0.29 0.52 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.12 3.54 5.11 -51.93 -0.27 3.28 16 43 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 44 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -32.57 365.97 -8.50 -41.07 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.92 Total: 6.24 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.40 Total: 4.68 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.06 Total: -61.37 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.27 Total: -12.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.57 -8.50 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469225260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.658 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds