Wall clock time and date at job start Tue Mar 31 2020 12:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46931 * 2 1 4 4 H 1.09003 * 109.47082 * 305.00175 * 3 2 1 5 5 N 1.46500 * 109.46658 * 65.00139 * 3 2 1 6 6 C 1.34775 * 120.00118 * 274.99282 * 5 3 2 7 7 O 1.21587 * 119.99896 * 354.67964 * 6 5 3 8 8 N 1.34772 * 120.00327 * 174.66967 * 6 5 3 9 9 C 1.46928 * 120.62821 * 5.03603 * 8 6 5 10 10 C 1.53189 * 108.77865 * 233.58465 * 9 8 6 11 11 C 1.53044 * 109.30843 * 305.36340 * 10 9 8 12 12 C 1.53041 * 109.53694 * 61.36716 * 11 10 9 13 13 H 1.08993 * 109.50282 * 58.58799 * 12 11 10 14 14 C 1.50702 * 109.49784 * 178.68236 * 12 11 10 15 15 H 1.08007 * 119.99567 * 35.03175 * 14 12 11 16 16 C 1.37870 * 120.00302 * 215.03738 * 14 12 11 17 17 N 1.31516 * 120.00760 * 174.98784 * 16 14 12 18 18 Si 1.86800 * 119.99772 * 354.98589 * 16 14 12 19 19 H 1.48505 * 109.47424 * 94.97326 * 18 16 14 20 20 H 1.48501 * 109.47383 * 214.97026 * 18 16 14 21 21 H 1.48497 * 109.47426 * 334.97264 * 18 16 14 22 22 C 1.46919 * 120.63580 * 184.75247 * 8 6 5 23 23 C 1.50696 * 109.47221 * 185.00013 * 3 2 1 24 24 N 1.29945 * 126.29180 * 285.02638 * 23 3 2 25 25 O 1.21298 * 110.25266 * 179.73057 * 24 23 3 26 26 C 1.33642 * 109.81036 * 0.02562 * 25 24 23 27 27 C 1.50706 * 126.54791 * 179.97438 * 26 25 24 28 28 N 1.31129 * 106.89878 * 359.97438 * 26 25 24 29 29 H 1.09006 * 109.46845 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47097 * 299.99212 * 1 2 3 31 31 H 1.08992 * 109.47571 * 60.00076 * 1 2 3 32 32 H 1.09001 * 109.47097 * 240.00788 * 2 1 3 33 33 H 1.08992 * 109.47571 * 119.99924 * 2 1 3 34 34 H 0.96997 * 119.99737 * 95.00843 * 5 3 2 35 35 H 1.08999 * 109.58545 * 353.37210 * 9 8 6 36 36 H 1.08998 * 109.58608 * 113.64897 * 9 8 6 37 37 H 1.08997 * 109.49986 * 65.31067 * 10 9 8 38 38 H 1.09003 * 109.49935 * 185.41470 * 10 9 8 39 39 H 1.09007 * 109.45995 * 181.38063 * 11 10 9 40 40 H 1.08996 * 109.46489 * 301.35696 * 11 10 9 41 41 H 0.96993 * 120.00804 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.59266 * 246.20403 * 22 8 6 43 43 H 1.09003 * 109.58543 * 6.62916 * 22 8 6 44 44 H 1.09005 * 109.46734 * 359.97196 * 27 26 25 45 45 H 1.08994 * 109.46999 * 119.97642 * 27 26 25 46 46 H 1.09003 * 109.46884 * 239.97639 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4351 2.6644 1.3670 7 8 -0.3042 2.7181 0.4032 8 7 0.0372 3.1717 2.5505 9 6 0.9581 3.2138 3.6946 10 6 0.2889 2.5315 4.8918 11 6 -1.0691 3.1868 5.1536 12 6 -1.9693 3.0059 3.9293 13 1 -2.0908 1.9430 3.7208 14 6 -3.3171 3.6232 4.2003 15 1 -3.3901 4.5193 4.7988 16 6 -4.4569 3.0440 3.6844 17 7 -5.6397 3.5240 4.0011 18 14 -4.3214 1.5774 2.5355 19 1 -4.4634 0.3221 3.3161 20 1 -5.3959 1.6485 1.5130 21 1 -2.9971 1.5954 1.8639 22 6 -1.3238 3.6987 2.7196 23 6 3.5418 1.4445 -0.1238 24 7 4.3912 1.1446 0.8128 25 8 5.5264 1.2372 0.3955 26 6 5.5085 1.6170 -0.8857 27 6 6.7066 1.8468 -1.7704 28 7 4.2492 1.7514 -1.2258 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.2719 2.1232 1.9977 35 1 1.8789 2.6879 3.4420 36 1 1.1858 4.2505 3.9424 37 1 0.1461 1.4730 4.6742 38 1 0.9213 2.6403 5.7729 39 1 -1.5367 2.7194 6.0203 40 1 -0.9280 4.2502 5.3465 41 1 -6.4416 3.1163 3.6385 42 1 -1.2805 4.7743 2.8912 43 1 -1.9092 3.4929 1.8235 44 1 7.6183 1.6553 -1.2044 45 1 6.6615 1.1725 -2.6256 46 1 6.7067 2.8789 -2.1211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469225267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:39 Heat of formation + Delta-G solvation = 37.809160 kcal Electronic energy + Delta-G solvation = -28392.970107 eV Core-core repulsion = 24514.100703 eV Total energy + Delta-G solvation = -3878.869403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.94906 -40.25434 -37.72683 -36.51804 -35.37992 -33.62982 -33.35151 -32.26126 -31.49448 -30.38175 -29.29855 -27.56712 -25.21366 -24.50051 -23.97407 -22.60219 -21.88377 -21.06983 -20.03766 -19.10300 -18.47534 -18.14823 -17.40339 -16.75059 -16.45032 -15.55291 -15.12522 -14.82291 -14.58687 -14.19079 -13.93953 -13.85280 -13.76894 -13.69774 -13.50832 -13.04947 -12.85711 -12.59879 -12.49509 -12.41098 -12.24648 -12.00762 -11.59355 -11.45320 -11.37309 -11.28451 -11.05558 -10.85312 -10.61264 -10.53552 -10.24715 -10.03386 -9.75626 -9.68309 -9.34499 -9.09565 -9.04884 -8.60569 -7.95459 -6.09659 -4.10322 0.79407 1.81698 2.46010 2.77663 3.28120 3.33357 3.44076 3.54694 3.55029 3.69825 4.12367 4.45225 4.52588 4.73945 4.78899 4.86658 5.01612 5.08001 5.13027 5.22020 5.33863 5.35680 5.39778 5.48201 5.58353 5.63877 5.79921 5.83941 5.99423 6.00130 6.15842 6.18083 6.26451 6.42079 6.47129 6.56813 6.63055 6.66742 6.76776 6.93987 7.21724 7.32279 7.42402 7.76104 7.82474 8.23295 8.49899 8.90615 8.96082 9.53903 11.02720 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.003410 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.378835 B = 8208.974883 C = 8932.470214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.257 3.743 4 H 0.120 0.880 5 N -0.748 5.748 6 C 0.707 3.293 7 O -0.583 6.583 8 N -0.623 5.623 9 C 0.115 3.885 10 C -0.136 4.136 11 C -0.103 4.103 12 C 0.007 3.993 13 H 0.035 0.965 14 C -0.513 4.513 15 H 0.075 0.925 16 C 0.075 3.925 17 N -0.896 5.896 18 Si 0.869 3.131 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.252 1.252 22 C 0.129 3.871 23 C 0.171 3.829 24 N -0.376 5.376 25 O 0.079 5.921 26 C 0.177 3.823 27 C -0.061 4.061 28 N -0.474 5.474 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.397 0.603 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.264 0.736 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.058 -5.538 -8.206 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.149 3.851 4 H 0.138 0.862 5 N -0.408 5.408 6 C 0.409 3.591 7 O -0.461 6.461 8 N -0.359 5.359 9 C -0.009 4.009 10 C -0.174 4.174 11 C -0.141 4.141 12 C -0.013 4.013 13 H 0.053 0.947 14 C -0.551 4.551 15 H 0.093 0.907 16 C -0.128 4.128 17 N -0.533 5.533 18 Si 0.695 3.305 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.176 1.176 22 C 0.008 3.992 23 C -0.103 4.103 24 N -0.083 5.083 25 O 0.019 5.981 26 C -0.044 4.044 27 C -0.119 4.119 28 N -0.208 5.208 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 24.684 -5.638 -8.402 26.677 hybrid contribution 0.473 -0.758 -0.223 0.921 sum 25.157 -6.396 -8.625 27.353 Atomic orbital electron populations 1.21765 0.93240 1.01140 1.04015 1.21948 0.98197 0.93987 1.02377 1.18922 0.81237 0.95391 0.89578 0.86229 1.45273 1.17322 1.62334 1.15891 1.15772 0.81179 0.78158 0.83972 1.90913 1.54199 1.63976 1.37017 1.47766 1.15558 1.63919 1.08653 1.21554 0.91508 1.00578 0.87231 1.21999 0.98652 1.00245 0.96548 1.21553 0.92986 0.99609 0.99940 1.19564 0.94772 0.96487 0.90486 0.94727 1.20893 0.88138 1.12913 1.33177 0.90720 1.25070 0.95263 0.96845 0.95577 1.69901 0.97660 1.41741 1.44022 0.86964 0.79086 0.82970 0.81435 1.20664 1.21391 1.17567 1.22503 0.77731 0.97351 1.01614 1.25937 0.99849 0.99190 0.85309 1.74591 0.89872 1.20819 1.22979 1.85305 1.24411 1.62280 1.26057 1.28906 0.96093 0.94734 0.84631 1.20406 0.89702 1.05205 0.96595 1.71882 1.01301 1.20669 1.26930 0.93053 0.91712 0.91662 0.91069 0.91474 0.76643 0.92037 0.91629 0.92125 0.91820 0.92174 0.92764 0.92582 0.92346 0.89771 0.88421 0.87760 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.58 37.16 0.32 -1.90 16 2 C -0.13 -1.64 5.59 -26.73 -0.15 -1.79 16 3 C 0.26 3.58 2.80 -69.08 -0.19 3.39 16 4 H 0.12 1.85 7.51 -51.93 -0.39 1.46 16 5 N -0.75 -11.24 4.93 -59.81 -0.30 -11.54 16 6 C 0.71 13.22 6.66 -86.92 -0.58 12.64 16 7 O -0.58 -12.81 13.35 5.29 0.07 -12.74 16 8 N -0.62 -11.50 2.97 -178.24 -0.53 -12.03 16 9 C 0.12 1.68 6.43 -3.71 -0.02 1.65 16 10 C -0.14 -2.05 6.08 -26.61 -0.16 -2.22 16 11 C -0.10 -1.95 5.15 -26.69 -0.14 -2.09 16 12 C 0.01 0.16 1.80 -91.43 -0.16 -0.01 16 13 H 0.03 0.84 5.59 -51.93 -0.29 0.55 16 14 C -0.51 -14.07 8.86 -34.44 -0.31 -14.37 16 15 H 0.07 2.20 8.06 -52.48 -0.42 1.78 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 17 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 18 Si 0.87 22.15 26.64 -169.99 -4.53 17.63 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.25 -6.41 6.00 56.52 0.34 -6.07 16 22 C 0.13 2.82 5.53 -3.49 -0.02 2.80 16 23 C 0.17 2.17 7.01 -156.37 -1.10 1.08 16 24 N -0.38 -4.55 11.86 30.90 0.37 -4.19 16 25 O 0.08 0.78 11.31 18.10 0.20 0.99 16 26 C 0.18 1.47 8.51 -13.06 -0.11 1.36 16 27 C -0.06 -0.17 10.51 36.01 0.38 0.21 16 28 N -0.47 -5.52 11.55 -9.87 -0.11 -5.63 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.20 5.76 -51.93 -0.30 0.90 16 31 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 5.34 5.82 -40.82 -0.24 5.10 16 35 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 2.07 5.96 -51.93 -0.31 1.76 16 44 H 0.10 0.06 8.14 -51.93 -0.42 -0.37 16 45 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -33.95 363.97 -7.83 -41.78 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.92 Total: 3.99 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.34 Total: 2.82 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.20 Total: -59.95 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.28 Total: -11.75 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.53 Total: 17.63 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.95 -7.83 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469225267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.585 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds