Wall clock time and date at job start Tue Mar 31 2020 12:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46931 * 2 1 4 4 H 1.09003 * 109.47082 * 305.00175 * 3 2 1 5 5 N 1.46500 * 109.46658 * 65.00139 * 3 2 1 6 6 C 1.34775 * 120.00118 * 274.99282 * 5 3 2 7 7 O 1.21587 * 119.99896 * 354.67964 * 6 5 3 8 8 N 1.34772 * 120.00327 * 174.66967 * 6 5 3 9 9 C 1.46928 * 120.62821 * 5.03603 * 8 6 5 10 10 C 1.53189 * 108.77865 * 233.58465 * 9 8 6 11 11 C 1.53044 * 109.30843 * 305.36340 * 10 9 8 12 12 C 1.53041 * 109.53694 * 61.36716 * 11 10 9 13 13 H 1.08993 * 109.50282 * 58.58799 * 12 11 10 14 14 C 1.50702 * 109.49784 * 178.68236 * 12 11 10 15 15 H 1.08007 * 119.99567 * 35.03175 * 14 12 11 16 16 C 1.37870 * 120.00302 * 215.03738 * 14 12 11 17 17 N 1.31516 * 120.00760 * 174.98784 * 16 14 12 18 18 Si 1.86800 * 119.99772 * 354.98589 * 16 14 12 19 19 H 1.48505 * 109.47424 * 94.97326 * 18 16 14 20 20 H 1.48501 * 109.47383 * 214.97026 * 18 16 14 21 21 H 1.48497 * 109.47426 * 334.97264 * 18 16 14 22 22 C 1.46919 * 120.63580 * 184.75247 * 8 6 5 23 23 C 1.50696 * 109.47221 * 185.00013 * 3 2 1 24 24 N 1.29945 * 126.29180 * 285.02638 * 23 3 2 25 25 O 1.21298 * 110.25266 * 179.73057 * 24 23 3 26 26 C 1.33642 * 109.81036 * 0.02562 * 25 24 23 27 27 C 1.50706 * 126.54791 * 179.97438 * 26 25 24 28 28 N 1.31129 * 106.89878 * 359.97438 * 26 25 24 29 29 H 1.09006 * 109.46845 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47097 * 299.99212 * 1 2 3 31 31 H 1.08992 * 109.47571 * 60.00076 * 1 2 3 32 32 H 1.09001 * 109.47097 * 240.00788 * 2 1 3 33 33 H 1.08992 * 109.47571 * 119.99924 * 2 1 3 34 34 H 0.96997 * 119.99737 * 95.00843 * 5 3 2 35 35 H 1.08999 * 109.58545 * 353.37210 * 9 8 6 36 36 H 1.08998 * 109.58608 * 113.64897 * 9 8 6 37 37 H 1.08997 * 109.49986 * 65.31067 * 10 9 8 38 38 H 1.09003 * 109.49935 * 185.41470 * 10 9 8 39 39 H 1.09007 * 109.45995 * 181.38063 * 11 10 9 40 40 H 1.08996 * 109.46489 * 301.35696 * 11 10 9 41 41 H 0.96993 * 120.00804 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.59266 * 246.20403 * 22 8 6 43 43 H 1.09003 * 109.58543 * 6.62916 * 22 8 6 44 44 H 1.09005 * 109.46734 * 359.97196 * 27 26 25 45 45 H 1.08994 * 109.46999 * 119.97642 * 27 26 25 46 46 H 1.09003 * 109.46884 * 239.97639 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4351 2.6644 1.3670 7 8 -0.3042 2.7181 0.4032 8 7 0.0372 3.1717 2.5505 9 6 0.9581 3.2138 3.6946 10 6 0.2889 2.5315 4.8918 11 6 -1.0691 3.1868 5.1536 12 6 -1.9693 3.0059 3.9293 13 1 -2.0908 1.9430 3.7208 14 6 -3.3171 3.6232 4.2003 15 1 -3.3901 4.5193 4.7988 16 6 -4.4569 3.0440 3.6844 17 7 -5.6397 3.5240 4.0011 18 14 -4.3214 1.5774 2.5355 19 1 -4.4634 0.3221 3.3161 20 1 -5.3959 1.6485 1.5130 21 1 -2.9971 1.5954 1.8639 22 6 -1.3238 3.6987 2.7196 23 6 3.5418 1.4445 -0.1238 24 7 4.3912 1.1446 0.8128 25 8 5.5264 1.2372 0.3955 26 6 5.5085 1.6170 -0.8857 27 6 6.7066 1.8468 -1.7704 28 7 4.2492 1.7514 -1.2258 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.2719 2.1232 1.9977 35 1 1.8789 2.6879 3.4420 36 1 1.1858 4.2505 3.9424 37 1 0.1461 1.4730 4.6742 38 1 0.9213 2.6403 5.7729 39 1 -1.5367 2.7194 6.0203 40 1 -0.9280 4.2502 5.3465 41 1 -6.4416 3.1163 3.6385 42 1 -1.2805 4.7743 2.8912 43 1 -1.9092 3.4929 1.8235 44 1 7.6183 1.6553 -1.2044 45 1 6.6615 1.1725 -2.6256 46 1 6.7067 2.8789 -2.1211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469225267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:38 Heat of formation + Delta-G solvation = 12.594254 kcal Electronic energy + Delta-G solvation = -28394.063507 eV Core-core repulsion = 24514.100703 eV Total energy + Delta-G solvation = -3879.962804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.75191 -41.67239 -39.09346 -37.71153 -36.35813 -35.37213 -34.22083 -33.91674 -32.87723 -32.05670 -29.78792 -28.72949 -27.05394 -26.01847 -24.83983 -23.51538 -23.42224 -22.27038 -21.40152 -20.61893 -19.52515 -19.27254 -18.83498 -18.31046 -17.68592 -16.92495 -16.60222 -15.97480 -15.77698 -15.53080 -15.29683 -15.25552 -15.00532 -14.75607 -14.34350 -14.22324 -14.19232 -14.01310 -13.87098 -13.69780 -13.10802 -13.08289 -12.97085 -12.82244 -12.70232 -12.55376 -12.45744 -12.20672 -12.09471 -11.97838 -11.77135 -11.63638 -11.33765 -11.12144 -11.02574 -10.94154 -10.78321 -10.37087 -9.47818 -8.34975 -6.36766 0.07045 0.95553 1.24647 1.33005 1.46969 1.53325 1.86786 2.05765 2.29251 2.41237 2.72514 3.03094 3.05458 3.68554 3.77410 3.91720 4.00312 4.08886 4.13122 4.24930 4.39426 4.43964 4.46869 4.55714 4.61919 4.64752 4.66510 4.69908 4.73688 4.83607 4.90973 4.94948 4.97771 5.00322 5.07590 5.14694 5.20250 5.26637 5.30563 5.41947 5.56721 5.62651 5.68310 5.92031 6.29143 6.71713 6.87985 7.06421 7.29735 7.46822 8.81381 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.003410 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.378835 B = 8208.974883 C = 8932.470214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.258 3.742 4 H 0.099 0.901 5 N -0.731 5.731 6 C 0.706 3.294 7 O -0.622 6.622 8 N -0.626 5.626 9 C 0.111 3.889 10 C -0.126 4.126 11 C -0.100 4.100 12 C 0.007 3.993 13 H 0.023 0.977 14 C -0.508 4.508 15 H 0.044 0.956 16 C 0.022 3.978 17 N -0.942 5.942 18 Si 0.929 3.071 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.256 1.256 22 C 0.143 3.857 23 C 0.158 3.842 24 N -0.386 5.386 25 O 0.084 5.916 26 C 0.195 3.805 27 C -0.061 4.061 28 N -0.506 5.506 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.407 0.593 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.266 0.734 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.330 -6.833 -8.415 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C 0.151 3.849 4 H 0.117 0.883 5 N -0.391 5.391 6 C 0.407 3.593 7 O -0.502 6.502 8 N -0.362 5.362 9 C -0.011 4.011 10 C -0.164 4.164 11 C -0.138 4.138 12 C -0.013 4.013 13 H 0.041 0.959 14 C -0.546 4.546 15 H 0.062 0.938 16 C -0.176 4.176 17 N -0.582 5.582 18 Si 0.755 3.245 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.180 1.180 22 C 0.020 3.980 23 C -0.115 4.115 24 N -0.093 5.093 25 O 0.023 5.977 26 C -0.024 4.024 27 C -0.119 4.119 28 N -0.241 5.241 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.245 0.755 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 29.019 -6.950 -8.593 31.053 hybrid contribution -0.723 -0.280 -0.175 0.795 sum 28.296 -7.229 -8.768 30.493 Atomic orbital electron populations 1.21682 0.95068 1.01370 1.01560 1.21865 0.96287 0.93677 1.03651 1.18821 0.82552 0.95399 0.88164 0.88275 1.45066 1.16036 1.61324 1.16715 1.15864 0.81850 0.78082 0.83464 1.90887 1.55586 1.65323 1.38446 1.47634 1.14806 1.63802 1.09992 1.21861 0.91550 1.02231 0.85488 1.21932 0.96679 0.99411 0.98380 1.21451 0.94565 1.00393 0.97415 1.19513 0.93586 0.95211 0.92980 0.95897 1.21203 0.90446 1.11567 1.31427 0.93785 1.25770 0.95111 0.99518 0.97171 1.70016 0.98423 1.43685 1.46032 0.86007 0.78441 0.80525 0.79573 1.19446 1.21665 1.18014 1.21928 0.79552 0.97203 0.99345 1.25594 0.99129 1.00572 0.86195 1.74563 0.90399 1.21117 1.23238 1.85278 1.23365 1.62205 1.26840 1.29920 0.96525 0.91882 0.84096 1.20814 0.88363 1.06282 0.96428 1.71882 1.02736 1.22381 1.27065 0.91423 0.95024 0.93191 0.89160 0.90659 0.75460 0.89016 0.89841 0.92509 0.87771 0.92792 0.92399 0.92507 0.92335 0.93152 0.85630 0.86143 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.58 71.98 0.62 -3.65 16 2 C -0.12 -2.87 5.59 30.60 0.17 -2.69 16 3 C 0.26 7.01 2.80 44.25 0.12 7.13 16 4 H 0.10 3.12 7.51 -2.39 -0.02 3.10 16 5 N -0.73 -21.09 4.93 -461.41 -2.28 -23.37 16 6 C 0.71 26.22 6.66 179.06 1.19 27.41 16 7 O -0.62 -28.05 13.35 -3.99 -0.05 -28.11 16 8 N -0.63 -22.61 2.97 -836.09 -2.48 -25.09 16 9 C 0.11 2.88 6.43 86.36 0.56 3.44 16 10 C -0.13 -3.39 6.08 30.67 0.19 -3.21 16 11 C -0.10 -3.68 5.15 30.62 0.16 -3.52 16 12 C 0.01 0.32 1.80 -11.32 -0.02 0.30 16 13 H 0.02 1.11 5.59 -2.39 -0.01 1.10 16 14 C -0.51 -28.74 8.86 25.60 0.23 -28.51 16 15 H 0.04 2.71 8.06 -2.91 -0.02 2.68 16 16 C 0.02 1.33 5.47 84.65 0.46 1.80 16 17 N -0.94 -59.47 13.96 21.44 0.30 -59.17 16 18 Si 0.93 47.49 26.64 68.60 1.83 49.32 16 19 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 21 H -0.26 -13.18 6.00 99.48 0.60 -12.58 16 22 C 0.14 6.31 5.53 86.51 0.48 6.79 16 23 C 0.16 3.77 7.01 138.46 0.97 4.74 16 24 N -0.39 -8.42 11.86 -60.33 -0.72 -9.14 16 25 O 0.08 1.42 11.31 74.84 0.85 2.27 16 26 C 0.19 2.67 8.51 88.38 0.75 3.43 16 27 C -0.06 -0.10 10.51 71.24 0.75 0.65 16 28 N -0.51 -10.87 11.55 -303.20 -3.50 -14.38 16 29 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.03 1.17 5.76 -2.39 -0.01 1.15 16 31 H 0.05 1.65 7.92 -2.39 -0.02 1.63 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 9.94 5.82 -92.71 -0.54 9.40 16 35 H 0.09 1.87 5.57 -2.39 -0.01 1.86 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.05 2.56 5.96 -2.39 -0.01 2.55 16 44 H 0.13 -0.45 8.14 -2.38 -0.02 -0.47 16 45 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -78.15 363.97 0.92 -77.22 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.35 Total: 16.33 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.63 Total: 14.11 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -8.68 Total: -131.14 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.79 Total: -25.84 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.83 Total: 49.32 kcal Total: -78.15 0.92 -77.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469225267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.819 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds