Wall clock time and date at job start Tue Mar 31 2020 12:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 H 1.08992 * 109.47341 * 54.99816 * 3 2 1 5 5 N 1.46505 * 109.46935 * 294.99869 * 3 2 1 6 6 C 1.34771 * 120.00058 * 85.00307 * 5 3 2 7 7 O 1.21586 * 119.99994 * 355.60676 * 6 5 3 8 8 N 1.34779 * 120.00155 * 175.88214 * 6 5 3 9 9 C 1.46921 * 120.62708 * 4.74964 * 8 6 5 10 10 C 1.53193 * 108.77707 * 233.58211 * 9 8 6 11 11 C 1.53041 * 109.31330 * 305.37092 * 10 9 8 12 12 C 1.53043 * 109.53798 * 61.36053 * 11 10 9 13 13 H 1.09001 * 109.49730 * 58.62144 * 12 11 10 14 14 C 1.50705 * 109.49287 * 178.68566 * 12 11 10 15 15 H 1.07995 * 120.00180 * 359.97438 * 14 12 11 16 16 C 1.37881 * 119.99309 * 180.02562 * 14 12 11 17 17 N 1.31516 * 120.00488 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99755 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47055 * 89.99747 * 18 16 14 20 20 H 1.48494 * 109.47342 * 210.00281 * 18 16 14 21 21 H 1.48504 * 109.47299 * 330.00293 * 18 16 14 22 22 C 1.46923 * 120.62997 * 184.46762 * 8 6 5 23 23 C 1.50702 * 109.47325 * 174.99904 * 3 2 1 24 24 N 1.29945 * 126.28761 * 74.68517 * 23 3 2 25 25 O 1.21296 * 110.25615 * 179.84623 * 24 23 3 26 26 C 1.33650 * 109.80648 * 0.42505 * 25 24 23 27 27 C 1.50702 * 126.55181 * 179.71681 * 26 25 24 28 28 N 1.31128 * 106.89525 * 359.73978 * 26 25 24 29 29 H 1.09000 * 109.47832 * 299.99963 * 1 2 3 30 30 H 1.09005 * 109.47226 * 60.00484 * 1 2 3 31 31 H 1.09007 * 109.46952 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47475 * 240.00446 * 2 1 3 33 33 H 1.09005 * 109.47226 * 119.99516 * 2 1 3 34 34 H 0.97001 * 119.99897 * 264.99500 * 5 3 2 35 35 H 1.08997 * 109.59156 * 353.37611 * 9 8 6 36 36 H 1.09003 * 109.58364 * 113.65500 * 9 8 6 37 37 H 1.09001 * 109.49344 * 65.31569 * 10 9 8 38 38 H 1.08995 * 109.50126 * 185.41737 * 10 9 8 39 39 H 1.08998 * 109.46063 * 181.38204 * 11 10 9 40 40 H 1.08999 * 109.45846 * 301.35798 * 11 10 9 41 41 H 0.96991 * 120.00091 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58947 * 246.19888 * 22 8 6 43 43 H 1.09002 * 109.59007 * 6.62862 * 22 8 6 44 44 H 1.08999 * 109.46892 * 270.02929 * 27 26 25 45 45 H 1.09001 * 109.46799 * 30.02460 * 27 26 25 46 46 H 1.09001 * 109.46708 * 150.02391 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8417 5 7 1.6523 2.0975 -1.2519 6 6 0.4350 2.6643 -1.3670 7 8 -0.3708 2.5633 -0.4621 8 7 0.1088 3.3385 -2.4876 9 6 1.0286 3.3766 -3.6327 10 6 1.2755 4.8385 -4.0183 11 6 -0.0669 5.5301 -4.2670 12 6 -0.9018 5.5032 -2.9846 13 1 -0.3561 6.0035 -2.1846 14 6 -2.2101 6.2127 -3.2214 15 1 -2.4249 6.6406 -4.1894 16 6 -3.1323 6.3164 -2.2017 17 7 -2.8701 5.7966 -1.0224 18 14 -4.7538 7.1965 -2.4948 19 1 -5.7658 6.2222 -2.9764 20 1 -5.2211 7.8090 -1.2253 21 1 -4.5634 8.2579 -3.5158 22 6 -1.1758 4.0441 -2.5895 23 6 3.5418 1.4445 0.1239 24 7 4.3910 1.1396 -0.8113 25 8 5.5264 1.2418 -0.3971 26 6 5.5087 1.6247 0.8833 27 6 6.7069 1.8596 1.7665 28 7 4.2494 1.7563 1.2242 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.2718 2.1232 -1.9978 35 1 1.9730 2.9064 -3.3587 36 1 0.5861 2.8442 -4.4746 37 1 1.8009 5.3446 -3.2084 38 1 1.8789 4.8787 -4.9251 39 1 0.1070 6.5639 -4.5655 40 1 -0.6027 5.0084 -5.0599 41 1 -3.5191 5.8693 -0.3052 42 1 -1.7955 3.5673 -3.3489 43 1 -1.6864 4.0146 -1.6269 44 1 6.9724 0.9317 2.2731 45 1 7.5469 2.1944 1.1578 46 1 6.4681 2.6227 2.5073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469225270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:42 Heat of formation + Delta-G solvation = 39.502368 kcal Electronic energy + Delta-G solvation = -28304.591849 eV Core-core repulsion = 24425.795869 eV Total energy + Delta-G solvation = -3878.795980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.82766 -39.99031 -37.52092 -36.32979 -35.19120 -33.54305 -33.24356 -32.17925 -31.28474 -29.69670 -29.17890 -27.38537 -25.04454 -24.30560 -23.85604 -22.47617 -21.82322 -20.95415 -19.90971 -18.99436 -18.35750 -17.87819 -17.22717 -16.37694 -16.03963 -15.36442 -14.95265 -14.63780 -14.54971 -14.18070 -13.83954 -13.73055 -13.71623 -13.48808 -13.26494 -12.79941 -12.62279 -12.53194 -12.34654 -12.12714 -11.95025 -11.85908 -11.44353 -11.31677 -11.24099 -10.98301 -10.89986 -10.69407 -10.50148 -10.36748 -10.21785 -10.12210 -9.86067 -9.41851 -9.08920 -8.93346 -8.79869 -8.40430 -7.64220 -5.96511 -4.05223 0.90933 1.94926 2.57228 2.98620 3.33056 3.40260 3.42377 3.47175 3.77045 3.88731 4.35652 4.46995 4.65178 4.84828 4.86624 5.01686 5.13752 5.21616 5.28839 5.33591 5.45971 5.50756 5.53081 5.61469 5.72970 5.76541 5.93663 5.99593 6.10815 6.17087 6.32046 6.33144 6.59037 6.66797 6.67449 6.75244 6.81588 6.99867 7.06461 7.33826 7.49094 7.75774 7.93772 7.94827 8.07302 8.42723 8.55082 8.98025 9.21549 9.60120 11.08685 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.003215 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.873202 B = 8707.636617 C = 9173.980916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.258 3.742 4 H 0.118 0.882 5 N -0.750 5.750 6 C 0.705 3.295 7 O -0.572 6.572 8 N -0.620 5.620 9 C 0.115 3.885 10 C -0.133 4.133 11 C -0.109 4.109 12 C 0.040 3.960 13 H 0.028 0.972 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.878 5.878 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.130 3.870 23 C 0.172 3.828 24 N -0.377 5.377 25 O 0.078 5.922 26 C 0.176 3.824 27 C -0.061 4.061 28 N -0.472 5.472 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.394 0.606 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.263 0.737 42 H 0.040 0.960 43 H 0.123 0.877 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.078 -10.842 2.127 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C 0.150 3.850 4 H 0.136 0.864 5 N -0.411 5.411 6 C 0.407 3.593 7 O -0.449 6.449 8 N -0.356 5.356 9 C -0.010 4.010 10 C -0.171 4.171 11 C -0.147 4.147 12 C 0.021 3.979 13 H 0.046 0.954 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.516 5.516 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.010 3.990 23 C -0.102 4.102 24 N -0.084 5.084 25 O 0.018 5.982 26 C -0.045 4.045 27 C -0.119 4.119 28 N -0.207 5.207 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.141 0.859 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.776 -11.048 2.456 21.073 hybrid contribution -0.248 0.509 -0.507 0.760 sum 17.528 -10.539 1.949 20.545 Atomic orbital electron populations 1.21802 0.93039 1.00415 1.04571 1.21939 0.98423 0.93999 1.02015 1.18904 0.81039 0.95373 0.89681 0.86433 1.45309 1.17438 1.62670 1.15668 1.15784 0.81445 0.78552 0.83558 1.90940 1.49253 1.64696 1.40008 1.47794 1.21512 1.53447 1.12895 1.21505 0.92385 0.97447 0.89626 1.21942 0.99380 0.95420 1.00385 1.21615 0.93936 0.98763 1.00396 1.19066 0.94851 0.92025 0.91993 0.95351 1.21070 1.01252 1.36000 0.97677 0.92412 1.25053 0.98442 0.95385 0.95123 1.69891 1.35351 1.44192 1.02145 0.86603 0.84025 0.79871 0.77550 1.20649 1.21232 1.19995 1.22293 0.80138 0.91774 1.04811 1.25984 0.99957 0.98883 0.85335 1.74576 0.89844 1.20937 1.23039 1.85289 1.24422 1.62329 1.26147 1.28891 0.96111 0.94929 0.84571 1.20402 0.89796 1.05004 0.96722 1.71901 1.01270 1.20504 1.26985 0.91605 0.91228 0.93706 0.91751 0.91377 0.76917 0.92367 0.91975 0.92300 0.92340 0.93071 0.93159 0.92668 0.94201 0.85884 0.88019 0.88381 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.46 37.15 0.31 -1.85 16 2 C -0.12 -1.68 5.59 -26.73 -0.15 -1.83 16 3 C 0.26 3.92 2.80 -69.08 -0.19 3.73 16 4 H 0.12 2.02 7.64 -51.93 -0.40 1.62 16 5 N -0.75 -12.34 4.94 -59.81 -0.30 -12.63 16 6 C 0.70 14.44 7.03 -86.92 -0.61 13.83 16 7 O -0.57 -13.65 12.58 5.29 0.07 -13.58 16 8 N -0.62 -12.70 2.97 -178.24 -0.53 -13.23 16 9 C 0.11 1.86 6.43 -3.71 -0.02 1.84 16 10 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 11 C -0.11 -2.20 5.10 -26.69 -0.14 -2.34 16 12 C 0.04 0.99 2.26 -91.42 -0.21 0.79 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 14 C -0.52 -14.20 8.56 -34.44 -0.29 -14.50 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -25.74 11.41 55.43 0.63 -25.11 16 18 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 C 0.13 3.18 5.41 -3.49 -0.02 3.16 16 23 C 0.17 2.41 7.01 -156.38 -1.10 1.31 16 24 N -0.38 -4.96 11.87 30.90 0.37 -4.59 16 25 O 0.08 0.85 11.31 18.08 0.20 1.05 16 26 C 0.18 1.66 8.51 -13.06 -0.11 1.55 16 27 C -0.06 -0.23 10.51 36.01 0.38 0.15 16 28 N -0.47 -6.12 11.55 -9.87 -0.11 -6.24 16 29 H 0.06 1.10 7.80 -51.93 -0.40 0.69 16 30 H 0.07 1.26 5.54 -51.93 -0.29 0.97 16 31 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.39 5.88 5.82 -40.82 -0.24 5.64 16 35 H 0.06 0.81 5.56 -51.93 -0.29 0.52 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.12 3.50 5.18 -51.93 -0.27 3.24 16 44 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -32.70 365.98 -8.50 -41.20 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.92 Total: 6.12 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.40 Total: 5.12 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.06 Total: -61.80 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.27 Total: -12.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.70 -8.50 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469225270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.703 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds