Wall clock time and date at job start Tue Mar 31 2020 12:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 H 1.08992 * 109.47341 * 54.99816 * 3 2 1 5 5 N 1.46505 * 109.46935 * 294.99869 * 3 2 1 6 6 C 1.34771 * 120.00058 * 85.00307 * 5 3 2 7 7 O 1.21586 * 119.99994 * 355.60676 * 6 5 3 8 8 N 1.34779 * 120.00155 * 175.88214 * 6 5 3 9 9 C 1.46921 * 120.62708 * 4.74964 * 8 6 5 10 10 C 1.53193 * 108.77707 * 233.58211 * 9 8 6 11 11 C 1.53041 * 109.31330 * 305.37092 * 10 9 8 12 12 C 1.53043 * 109.53798 * 61.36053 * 11 10 9 13 13 H 1.09001 * 109.49730 * 58.62144 * 12 11 10 14 14 C 1.50705 * 109.49287 * 178.68566 * 12 11 10 15 15 H 1.07995 * 120.00180 * 359.97438 * 14 12 11 16 16 C 1.37881 * 119.99309 * 180.02562 * 14 12 11 17 17 N 1.31516 * 120.00488 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99755 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47055 * 89.99747 * 18 16 14 20 20 H 1.48494 * 109.47342 * 210.00281 * 18 16 14 21 21 H 1.48504 * 109.47299 * 330.00293 * 18 16 14 22 22 C 1.46923 * 120.62997 * 184.46762 * 8 6 5 23 23 C 1.50702 * 109.47325 * 174.99904 * 3 2 1 24 24 N 1.29945 * 126.28761 * 74.68517 * 23 3 2 25 25 O 1.21296 * 110.25615 * 179.84623 * 24 23 3 26 26 C 1.33650 * 109.80648 * 0.42505 * 25 24 23 27 27 C 1.50702 * 126.55181 * 179.71681 * 26 25 24 28 28 N 1.31128 * 106.89525 * 359.73978 * 26 25 24 29 29 H 1.09000 * 109.47832 * 299.99963 * 1 2 3 30 30 H 1.09005 * 109.47226 * 60.00484 * 1 2 3 31 31 H 1.09007 * 109.46952 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47475 * 240.00446 * 2 1 3 33 33 H 1.09005 * 109.47226 * 119.99516 * 2 1 3 34 34 H 0.97001 * 119.99897 * 264.99500 * 5 3 2 35 35 H 1.08997 * 109.59156 * 353.37611 * 9 8 6 36 36 H 1.09003 * 109.58364 * 113.65500 * 9 8 6 37 37 H 1.09001 * 109.49344 * 65.31569 * 10 9 8 38 38 H 1.08995 * 109.50126 * 185.41737 * 10 9 8 39 39 H 1.08998 * 109.46063 * 181.38204 * 11 10 9 40 40 H 1.08999 * 109.45846 * 301.35798 * 11 10 9 41 41 H 0.96991 * 120.00091 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58947 * 246.19888 * 22 8 6 43 43 H 1.09002 * 109.59007 * 6.62862 * 22 8 6 44 44 H 1.08999 * 109.46892 * 270.02929 * 27 26 25 45 45 H 1.09001 * 109.46799 * 30.02460 * 27 26 25 46 46 H 1.09001 * 109.46708 * 150.02391 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8417 5 7 1.6523 2.0975 -1.2519 6 6 0.4350 2.6643 -1.3670 7 8 -0.3708 2.5633 -0.4621 8 7 0.1088 3.3385 -2.4876 9 6 1.0286 3.3766 -3.6327 10 6 1.2755 4.8385 -4.0183 11 6 -0.0669 5.5301 -4.2670 12 6 -0.9018 5.5032 -2.9846 13 1 -0.3561 6.0035 -2.1846 14 6 -2.2101 6.2127 -3.2214 15 1 -2.4249 6.6406 -4.1894 16 6 -3.1323 6.3164 -2.2017 17 7 -2.8701 5.7966 -1.0224 18 14 -4.7538 7.1965 -2.4948 19 1 -5.7658 6.2222 -2.9764 20 1 -5.2211 7.8090 -1.2253 21 1 -4.5634 8.2579 -3.5158 22 6 -1.1758 4.0441 -2.5895 23 6 3.5418 1.4445 0.1239 24 7 4.3910 1.1396 -0.8113 25 8 5.5264 1.2418 -0.3971 26 6 5.5087 1.6247 0.8833 27 6 6.7069 1.8596 1.7665 28 7 4.2494 1.7563 1.2242 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.2718 2.1232 -1.9978 35 1 1.9730 2.9064 -3.3587 36 1 0.5861 2.8442 -4.4746 37 1 1.8009 5.3446 -3.2084 38 1 1.8789 4.8787 -4.9251 39 1 0.1070 6.5639 -4.5655 40 1 -0.6027 5.0084 -5.0599 41 1 -3.5191 5.8693 -0.3052 42 1 -1.7955 3.5673 -3.3489 43 1 -1.6864 4.0146 -1.6269 44 1 6.9724 0.9317 2.2731 45 1 7.5469 2.1944 1.1578 46 1 6.4681 2.6227 2.5073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469225270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:41 Heat of formation + Delta-G solvation = 16.171521 kcal Electronic energy + Delta-G solvation = -28305.603551 eV Core-core repulsion = 24425.795869 eV Total energy + Delta-G solvation = -3879.807682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.74405 -41.55208 -39.00244 -37.63541 -36.30742 -35.39286 -34.16932 -33.82634 -32.76822 -31.47903 -29.77706 -28.64918 -26.99214 -25.93069 -24.82934 -23.49632 -23.47135 -22.28007 -21.37414 -20.57023 -19.29547 -19.26665 -18.46452 -18.13667 -17.58681 -16.89763 -16.52853 -16.02903 -15.68982 -15.50180 -15.25179 -15.15624 -14.92399 -14.39356 -14.29714 -14.16833 -14.13670 -13.87964 -13.73256 -13.55294 -13.06754 -12.97007 -12.88648 -12.69141 -12.57594 -12.44281 -12.30932 -12.24147 -12.18756 -11.96833 -11.84866 -11.63992 -11.19858 -10.99923 -10.95305 -10.83058 -10.51834 -10.26267 -9.32361 -8.09694 -6.26636 0.07722 0.97308 1.41172 1.41640 1.52454 1.63595 1.87367 2.17645 2.41665 2.44930 2.81477 3.08002 3.19585 3.70420 3.83518 3.95678 4.04792 4.10831 4.23147 4.30226 4.43778 4.50036 4.56893 4.61099 4.67771 4.69468 4.75688 4.76729 4.81430 4.91037 4.96422 5.04345 5.07009 5.14920 5.22644 5.24379 5.29389 5.34879 5.43828 5.56640 5.60754 5.84949 5.94736 6.09777 6.35316 6.85552 7.00403 7.07865 7.43021 7.60511 8.93716 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.003215 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.873202 B = 8707.636617 C = 9173.980916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C 0.259 3.741 4 H 0.090 0.910 5 N -0.732 5.732 6 C 0.701 3.299 7 O -0.614 6.614 8 N -0.626 5.626 9 C 0.110 3.890 10 C -0.125 4.125 11 C -0.104 4.104 12 C 0.039 3.961 13 H -0.015 1.015 14 C -0.536 4.536 15 H 0.062 0.938 16 C 0.010 3.990 17 N -0.913 5.913 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.263 1.263 22 C 0.146 3.854 23 C 0.157 3.843 24 N -0.385 5.385 25 O 0.085 5.915 26 C 0.194 3.806 27 C -0.061 4.061 28 N -0.509 5.509 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.404 0.596 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.259 0.741 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.766 -11.640 0.683 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 C 0.151 3.849 4 H 0.108 0.892 5 N -0.393 5.393 6 C 0.403 3.597 7 O -0.494 6.494 8 N -0.362 5.362 9 C -0.012 4.012 10 C -0.163 4.163 11 C -0.141 4.141 12 C 0.020 3.980 13 H 0.003 0.997 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.189 4.189 17 N -0.552 5.552 18 Si 0.783 3.217 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.187 1.187 22 C 0.024 3.976 23 C -0.116 4.116 24 N -0.092 5.092 25 O 0.024 5.976 26 C -0.025 4.025 27 C -0.119 4.119 28 N -0.243 5.243 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.243 0.757 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 20.519 -11.854 0.982 23.717 hybrid contribution -0.955 0.757 -0.004 1.219 sum 19.563 -11.097 0.977 22.513 Atomic orbital electron populations 1.21682 0.94538 1.00965 1.01948 1.21851 0.96804 0.93134 1.03439 1.18815 0.82436 0.95747 0.87894 0.89242 1.45067 1.15951 1.61726 1.16531 1.15920 0.82183 0.78583 0.83026 1.90912 1.50816 1.66150 1.41499 1.47688 1.21109 1.53048 1.14359 1.21820 0.92837 0.97923 0.88644 1.21893 0.97602 0.94759 1.02011 1.21498 0.95231 0.99671 0.97726 1.18990 0.94434 0.91485 0.93130 0.99718 1.21501 1.02280 1.35908 0.97732 0.91953 1.25894 1.02045 0.96172 0.94838 1.70092 1.36384 1.45661 1.03040 0.85564 0.79756 0.78933 0.77459 1.20025 1.21386 1.18741 1.21689 0.81777 0.92113 1.02047 1.25627 0.99223 1.00441 0.86296 1.74543 0.90346 1.21132 1.23155 1.85262 1.23313 1.62201 1.26862 1.29930 0.96509 0.92008 0.84053 1.20820 0.88191 1.06489 0.96376 1.71897 1.02826 1.22335 1.27218 0.93841 0.94229 0.91433 0.90517 0.89512 0.75723 0.89446 0.89937 0.93552 0.87847 0.92933 0.92218 0.93172 0.94636 0.90387 0.85477 0.85590 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.46 71.98 0.61 -3.63 16 2 C -0.11 -3.03 5.59 30.59 0.17 -2.86 16 3 C 0.26 8.01 2.80 44.25 0.12 8.13 16 4 H 0.09 3.28 7.64 -2.39 -0.02 3.26 16 5 N -0.73 -24.26 4.94 -461.41 -2.28 -26.53 16 6 C 0.70 29.85 7.03 179.06 1.26 31.11 16 7 O -0.61 -31.35 12.58 -3.99 -0.05 -31.40 16 8 N -0.63 -26.14 2.97 -836.08 -2.48 -28.62 16 9 C 0.11 3.36 6.43 86.36 0.56 3.92 16 10 C -0.12 -3.86 6.08 30.67 0.19 -3.67 16 11 C -0.10 -4.08 5.10 30.62 0.16 -3.92 16 12 C 0.04 2.01 2.26 -11.31 -0.03 1.98 16 13 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 14 C -0.54 -29.88 8.56 25.60 0.22 -29.66 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 16 C 0.01 0.57 5.30 84.66 0.45 1.02 16 17 N -0.91 -56.27 11.41 21.45 0.24 -56.03 16 18 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.15 7.46 5.41 86.51 0.47 7.93 16 23 C 0.16 4.29 7.01 138.46 0.97 5.26 16 24 N -0.38 -9.46 11.87 -60.32 -0.72 -10.18 16 25 O 0.09 1.65 11.31 74.77 0.85 2.49 16 26 C 0.19 3.22 8.51 88.38 0.75 3.97 16 27 C -0.06 -0.25 10.51 71.24 0.75 0.50 16 28 N -0.51 -12.72 11.55 -303.19 -3.50 -16.22 16 29 H 0.04 1.54 7.80 -2.39 -0.02 1.52 16 30 H 0.04 1.49 5.54 -2.38 -0.01 1.47 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.40 11.56 5.82 -92.71 -0.54 11.02 16 35 H 0.09 2.17 5.56 -2.39 -0.01 2.16 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 4.75 5.18 -2.39 -0.01 4.73 16 44 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -77.13 365.98 1.19 -75.94 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.46 Total: 23.59 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 6.64 Total: 20.09 kcal Atomic # 7 Polarization: -128.85 SS G_CDS: -8.73 Total: -137.58 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: 0.80 Total: -28.91 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -77.13 1.19 -75.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469225270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.109 kcal (2) G-P(sol) polarization free energy of solvation -77.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds