Wall clock time and date at job start Tue Mar 31 2020 12:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47556 * 2 1 4 4 H 1.08995 * 109.47291 * 305.00753 * 3 2 1 5 5 N 1.46509 * 109.46639 * 65.00281 * 3 2 1 6 6 C 1.34773 * 119.99810 * 275.00160 * 5 3 2 7 7 O 1.21594 * 119.99971 * 354.72683 * 6 5 3 8 8 N 1.34775 * 120.00055 * 174.73149 * 6 5 3 9 9 C 1.46928 * 120.63136 * 4.91573 * 8 6 5 10 10 C 1.53625 * 108.54101 * 126.37052 * 9 8 6 11 11 C 1.53037 * 109.23952 * 54.86058 * 10 9 8 12 12 C 1.53045 * 109.53922 * 298.50711 * 11 10 9 13 13 H 1.08999 * 109.49487 * 301.41530 * 12 11 10 14 14 C 1.50696 * 109.52351 * 181.33583 * 12 11 10 15 15 H 1.08008 * 120.00379 * 0.14685 * 14 12 11 16 16 C 1.37876 * 120.00168 * 180.14780 * 14 12 11 17 17 N 1.31516 * 119.99872 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00341 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47413 * 59.99631 * 18 16 14 20 20 H 1.48502 * 109.47318 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.46902 * 299.99648 * 18 16 14 22 22 C 1.46930 * 120.63289 * 185.20529 * 8 6 5 23 23 C 1.50700 * 109.47463 * 184.99835 * 3 2 1 24 24 N 1.29942 * 126.28842 * 284.69485 * 23 3 2 25 25 O 1.21303 * 110.25035 * 179.83939 * 24 23 3 26 26 C 1.33643 * 109.80817 * 0.42540 * 25 24 23 27 27 C 1.50700 * 126.54708 * 179.71679 * 26 25 24 28 28 N 1.31124 * 106.89862 * 359.73913 * 26 25 24 29 29 H 1.08997 * 109.47716 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47137 * 299.99609 * 1 2 3 31 31 H 1.09006 * 109.47281 * 59.99466 * 1 2 3 32 32 H 1.09004 * 109.47137 * 240.00391 * 2 1 3 33 33 H 1.09006 * 109.47281 * 120.00534 * 2 1 3 34 34 H 0.97001 * 120.00084 * 95.00082 * 5 3 2 35 35 H 1.08997 * 109.58879 * 246.20954 * 9 8 6 36 36 H 1.09005 * 109.58320 * 6.63157 * 9 8 6 37 37 H 1.08997 * 109.63374 * 294.86935 * 10 9 8 38 38 H 1.09000 * 109.42573 * 174.72764 * 10 9 8 39 39 H 1.09000 * 109.46102 * 178.49047 * 11 10 9 40 40 H 1.09001 * 109.45093 * 58.52535 * 11 10 9 41 41 H 0.97001 * 120.00408 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.58091 * 353.36272 * 22 8 6 43 43 H 1.08993 * 109.59343 * 113.79186 * 22 8 6 44 44 H 1.09003 * 109.46784 * 270.01923 * 27 26 25 45 45 H 1.09000 * 109.47196 * 30.02088 * 27 26 25 46 46 H 1.08999 * 109.47371 * 150.02491 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 0.4352 2.6643 1.3671 7 8 -0.3045 2.7171 0.4035 8 7 0.0379 3.1727 2.5504 9 6 0.9586 3.2137 3.6947 10 6 1.0153 4.6546 4.2246 11 6 -0.4038 5.1311 4.5428 12 6 -1.2457 5.1212 3.2648 13 1 -0.7827 5.7676 2.5192 14 6 -2.6336 5.6215 3.5721 15 1 -2.8898 5.9196 4.5781 16 6 -3.5764 5.6988 2.5691 17 7 -3.2643 5.3363 1.3440 18 14 -5.2965 6.3197 2.9498 19 1 -5.2173 7.7063 3.4752 20 1 -6.1136 6.3055 1.7099 21 1 -5.9264 5.4400 3.9671 22 6 -1.3263 3.6908 2.7224 23 6 3.5419 1.4443 -0.1238 24 7 4.3913 1.1502 0.8146 25 8 5.5266 1.2429 0.3975 26 6 5.5088 1.6252 -0.8830 27 6 6.7071 1.8613 -1.7658 28 7 4.2495 1.7562 -1.2242 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2720 2.1230 1.9979 35 1 0.5978 2.5472 4.4780 36 1 1.9527 2.9010 3.3751 37 1 1.4569 5.3053 3.4699 38 1 1.6207 4.6840 5.1305 39 1 -0.3653 6.1436 4.9444 40 1 -0.8537 4.4652 5.2793 41 1 -3.9277 5.3902 0.6383 42 1 -1.8402 3.6930 1.7611 43 1 -1.8696 3.0624 3.4281 44 1 7.0186 2.9027 -1.6846 45 1 7.5240 1.2121 -1.4507 46 1 6.4455 1.6400 -2.8005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469225272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:46 Heat of formation + Delta-G solvation = 38.224594 kcal Electronic energy + Delta-G solvation = -28271.997518 eV Core-core repulsion = 24393.146129 eV Total energy + Delta-G solvation = -3878.851389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.83678 -39.97435 -37.51541 -36.32335 -35.20781 -33.53606 -33.25374 -32.15573 -31.31647 -29.68028 -29.18840 -27.41057 -25.03650 -24.29783 -23.86379 -22.49502 -21.82128 -20.95152 -19.90993 -19.00526 -18.36840 -17.87121 -17.21812 -16.39076 -16.04943 -15.34826 -14.92614 -14.60913 -14.55869 -14.17710 -13.84619 -13.79123 -13.69177 -13.48996 -13.19574 -12.80021 -12.68533 -12.54191 -12.37625 -12.13371 -11.94187 -11.84594 -11.47152 -11.33568 -11.25088 -10.96922 -10.91179 -10.73697 -10.50697 -10.38092 -10.20311 -10.13491 -9.85027 -9.42251 -9.06985 -8.93588 -8.82979 -8.38774 -7.64292 -5.94874 -4.04202 0.90048 1.94164 2.56282 2.98614 3.34516 3.40430 3.41614 3.46170 3.77368 3.87100 4.36652 4.47724 4.64458 4.83002 4.87078 4.99186 5.12376 5.20157 5.28987 5.34563 5.44189 5.50008 5.51722 5.62028 5.70968 5.75155 5.91833 5.99291 6.07142 6.17826 6.27517 6.33092 6.59752 6.64346 6.68072 6.69869 6.81722 7.00992 7.05194 7.36000 7.50058 7.76457 7.93550 7.95662 8.08859 8.43959 8.55492 8.98928 9.22453 9.61034 11.09888 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.003150 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.343556 B = 8886.974779 C = 9439.516249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.256 3.744 4 H 0.120 0.880 5 N -0.751 5.751 6 C 0.705 3.295 7 O -0.572 6.572 8 N -0.620 5.620 9 C 0.114 3.886 10 C -0.133 4.133 11 C -0.109 4.109 12 C 0.040 3.960 13 H 0.028 0.972 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.878 5.878 18 Si 0.892 3.108 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.129 3.871 23 C 0.172 3.828 24 N -0.377 5.377 25 O 0.078 5.922 26 C 0.175 3.825 27 C -0.061 4.061 28 N -0.473 5.473 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.125 0.875 43 H 0.039 0.961 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.936 -10.134 -2.880 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.148 3.852 4 H 0.138 0.862 5 N -0.411 5.411 6 C 0.407 3.593 7 O -0.449 6.449 8 N -0.357 5.357 9 C -0.010 4.010 10 C -0.171 4.171 11 C -0.147 4.147 12 C 0.021 3.979 13 H 0.046 0.954 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.515 5.515 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.009 3.991 23 C -0.101 4.101 24 N -0.084 5.084 25 O 0.018 5.982 26 C -0.045 4.045 27 C -0.119 4.119 28 N -0.207 5.207 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.058 0.942 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.667 -10.240 -3.245 21.537 hybrid contribution -0.306 0.389 0.588 0.769 sum 18.361 -9.851 -2.657 21.005 Atomic orbital electron populations 1.21745 0.93244 1.00801 1.04143 1.21936 0.98240 0.94088 1.02152 1.18905 0.81087 0.95268 0.89900 0.86249 1.45321 1.17471 1.62681 1.15671 1.15793 0.81087 0.78296 0.84146 1.90951 1.53981 1.63335 1.36634 1.47794 1.15748 1.63577 1.08544 1.21595 0.92255 0.97705 0.89434 1.22014 0.99389 0.95758 0.99932 1.21616 0.93173 0.99669 1.00260 1.18974 0.94715 0.92542 0.91700 0.95354 1.21029 0.95768 1.44093 0.95201 0.92480 1.25054 0.98729 0.95142 0.95077 1.69888 1.34511 1.46617 1.00462 0.86670 0.84451 0.79350 0.77583 1.20344 1.21271 1.20283 1.22211 0.77314 0.94789 1.04800 1.25982 0.99948 0.99023 0.85189 1.74581 0.89845 1.21078 1.22882 1.85290 1.24450 1.62325 1.26122 1.28888 0.96116 0.94838 0.84673 1.20401 0.89765 1.04759 0.96996 1.71901 1.01261 1.20396 1.27110 0.93296 0.91704 0.91562 0.91231 0.91657 0.76939 0.91977 0.92359 0.92259 0.92364 0.93076 0.93179 0.92612 0.85744 0.94222 0.87958 0.88412 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.58 37.15 0.32 -1.84 16 2 C -0.12 -1.67 5.59 -26.73 -0.15 -1.82 16 3 C 0.26 3.88 2.80 -69.08 -0.19 3.68 16 4 H 0.12 2.04 7.51 -51.93 -0.39 1.65 16 5 N -0.75 -12.34 4.93 -59.81 -0.29 -12.63 16 6 C 0.71 14.50 6.67 -86.92 -0.58 13.92 16 7 O -0.57 -13.87 13.33 5.28 0.07 -13.80 16 8 N -0.62 -12.73 2.97 -178.23 -0.53 -13.26 16 9 C 0.11 1.86 6.42 -3.48 -0.02 1.84 16 10 C -0.13 -2.22 6.10 -26.39 -0.16 -2.38 16 11 C -0.11 -2.22 5.11 -26.69 -0.14 -2.35 16 12 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.52 -14.27 8.57 -34.44 -0.30 -14.56 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -25.80 11.39 55.43 0.63 -25.17 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.13 3.16 5.41 -3.71 -0.02 3.14 16 23 C 0.17 2.39 7.01 -156.38 -1.10 1.29 16 24 N -0.38 -4.92 11.85 30.90 0.37 -4.56 16 25 O 0.08 0.84 11.31 18.10 0.20 1.04 16 26 C 0.18 1.64 8.51 -13.06 -0.11 1.52 16 27 C -0.06 -0.22 10.51 36.01 0.38 0.15 16 28 N -0.47 -6.06 11.55 -9.87 -0.11 -6.17 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.17 5.76 -51.93 -0.30 0.87 16 31 H 0.07 1.09 7.92 -51.93 -0.41 0.68 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.39 5.87 5.84 -40.82 -0.24 5.63 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.81 5.64 -51.93 -0.29 0.52 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.12 3.55 5.11 -51.93 -0.27 3.28 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -32.97 366.68 -8.46 -41.44 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.93 Total: 6.11 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.37 Total: 5.06 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.06 Total: -61.79 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.28 Total: -12.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.97 -8.46 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469225272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.661 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds