Wall clock time and date at job start Tue Mar 31 2020 12:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47556 * 2 1 4 4 H 1.08995 * 109.47291 * 305.00753 * 3 2 1 5 5 N 1.46509 * 109.46639 * 65.00281 * 3 2 1 6 6 C 1.34773 * 119.99810 * 275.00160 * 5 3 2 7 7 O 1.21594 * 119.99971 * 354.72683 * 6 5 3 8 8 N 1.34775 * 120.00055 * 174.73149 * 6 5 3 9 9 C 1.46928 * 120.63136 * 4.91573 * 8 6 5 10 10 C 1.53625 * 108.54101 * 126.37052 * 9 8 6 11 11 C 1.53037 * 109.23952 * 54.86058 * 10 9 8 12 12 C 1.53045 * 109.53922 * 298.50711 * 11 10 9 13 13 H 1.08999 * 109.49487 * 301.41530 * 12 11 10 14 14 C 1.50696 * 109.52351 * 181.33583 * 12 11 10 15 15 H 1.08008 * 120.00379 * 0.14685 * 14 12 11 16 16 C 1.37876 * 120.00168 * 180.14780 * 14 12 11 17 17 N 1.31516 * 119.99872 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00341 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47413 * 59.99631 * 18 16 14 20 20 H 1.48502 * 109.47318 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.46902 * 299.99648 * 18 16 14 22 22 C 1.46930 * 120.63289 * 185.20529 * 8 6 5 23 23 C 1.50700 * 109.47463 * 184.99835 * 3 2 1 24 24 N 1.29942 * 126.28842 * 284.69485 * 23 3 2 25 25 O 1.21303 * 110.25035 * 179.83939 * 24 23 3 26 26 C 1.33643 * 109.80817 * 0.42540 * 25 24 23 27 27 C 1.50700 * 126.54708 * 179.71679 * 26 25 24 28 28 N 1.31124 * 106.89862 * 359.73913 * 26 25 24 29 29 H 1.08997 * 109.47716 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47137 * 299.99609 * 1 2 3 31 31 H 1.09006 * 109.47281 * 59.99466 * 1 2 3 32 32 H 1.09004 * 109.47137 * 240.00391 * 2 1 3 33 33 H 1.09006 * 109.47281 * 120.00534 * 2 1 3 34 34 H 0.97001 * 120.00084 * 95.00082 * 5 3 2 35 35 H 1.08997 * 109.58879 * 246.20954 * 9 8 6 36 36 H 1.09005 * 109.58320 * 6.63157 * 9 8 6 37 37 H 1.08997 * 109.63374 * 294.86935 * 10 9 8 38 38 H 1.09000 * 109.42573 * 174.72764 * 10 9 8 39 39 H 1.09000 * 109.46102 * 178.49047 * 11 10 9 40 40 H 1.09001 * 109.45093 * 58.52535 * 11 10 9 41 41 H 0.97001 * 120.00408 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.58091 * 353.36272 * 22 8 6 43 43 H 1.08993 * 109.59343 * 113.79186 * 22 8 6 44 44 H 1.09003 * 109.46784 * 270.01923 * 27 26 25 45 45 H 1.09000 * 109.47196 * 30.02088 * 27 26 25 46 46 H 1.08999 * 109.47371 * 150.02491 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 0.4352 2.6643 1.3671 7 8 -0.3045 2.7171 0.4035 8 7 0.0379 3.1727 2.5504 9 6 0.9586 3.2137 3.6947 10 6 1.0153 4.6546 4.2246 11 6 -0.4038 5.1311 4.5428 12 6 -1.2457 5.1212 3.2648 13 1 -0.7827 5.7676 2.5192 14 6 -2.6336 5.6215 3.5721 15 1 -2.8898 5.9196 4.5781 16 6 -3.5764 5.6988 2.5691 17 7 -3.2643 5.3363 1.3440 18 14 -5.2965 6.3197 2.9498 19 1 -5.2173 7.7063 3.4752 20 1 -6.1136 6.3055 1.7099 21 1 -5.9264 5.4400 3.9671 22 6 -1.3263 3.6908 2.7224 23 6 3.5419 1.4443 -0.1238 24 7 4.3913 1.1502 0.8146 25 8 5.5266 1.2429 0.3975 26 6 5.5088 1.6252 -0.8830 27 6 6.7071 1.8613 -1.7658 28 7 4.2495 1.7562 -1.2242 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2720 2.1230 1.9979 35 1 0.5978 2.5472 4.4780 36 1 1.9527 2.9010 3.3751 37 1 1.4569 5.3053 3.4699 38 1 1.6207 4.6840 5.1305 39 1 -0.3653 6.1436 4.9444 40 1 -0.8537 4.4652 5.2793 41 1 -3.9277 5.3902 0.6383 42 1 -1.8402 3.6930 1.7611 43 1 -1.8696 3.0624 3.4281 44 1 7.0186 2.9027 -1.6846 45 1 7.5240 1.2121 -1.4507 46 1 6.4455 1.6400 -2.8005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469225272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:45 Heat of formation + Delta-G solvation = 14.484220 kcal Electronic energy + Delta-G solvation = -28273.026978 eV Core-core repulsion = 24393.146129 eV Total energy + Delta-G solvation = -3879.880849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.74384 -41.54275 -38.99437 -37.63852 -36.32030 -35.38529 -34.17715 -33.80333 -32.80217 -31.46646 -29.77747 -28.66852 -26.99139 -25.91939 -24.83076 -23.50848 -23.47134 -22.26944 -21.38106 -20.58545 -19.27915 -19.26883 -18.46558 -18.13475 -17.59487 -16.90486 -16.50575 -15.96038 -15.71762 -15.50135 -15.25234 -15.19863 -14.85778 -14.41002 -14.29215 -14.17625 -14.15312 -13.90551 -13.77144 -13.53936 -13.06355 -12.96175 -12.85052 -12.71620 -12.60381 -12.43673 -12.29533 -12.25651 -12.19232 -12.01226 -11.86272 -11.63996 -11.21245 -11.00717 -10.94886 -10.84096 -10.50451 -10.29607 -9.33007 -8.08529 -6.26289 0.07765 0.97579 1.41386 1.42905 1.51353 1.63907 1.87468 2.16478 2.41830 2.44704 2.81885 3.08567 3.19848 3.70824 3.81939 3.95837 4.03802 4.09539 4.23800 4.28767 4.43420 4.48839 4.56655 4.61319 4.67214 4.69068 4.74417 4.76998 4.82151 4.88586 4.95376 5.02080 5.07223 5.14968 5.21851 5.24783 5.28915 5.34139 5.37772 5.56493 5.61234 5.85781 5.95279 6.10421 6.35770 6.86047 7.00297 7.07941 7.43373 7.60815 8.94261 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.003150 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.343556 B = 8886.974779 C = 9439.516249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C 0.257 3.743 4 H 0.092 0.908 5 N -0.732 5.732 6 C 0.703 3.297 7 O -0.618 6.618 8 N -0.626 5.626 9 C 0.110 3.890 10 C -0.125 4.125 11 C -0.104 4.104 12 C 0.039 3.961 13 H -0.017 1.017 14 C -0.537 4.537 15 H 0.062 0.938 16 C 0.010 3.990 17 N -0.913 5.913 18 Si 0.957 3.043 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.266 1.266 22 C 0.145 3.855 23 C 0.158 3.842 24 N -0.385 5.385 25 O 0.085 5.915 26 C 0.194 3.806 27 C -0.061 4.061 28 N -0.508 5.508 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.404 0.596 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.259 0.741 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.121 0.879 45 H 0.128 0.872 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.634 -11.060 -1.398 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 C 0.149 3.851 4 H 0.110 0.890 5 N -0.393 5.393 6 C 0.404 3.596 7 O -0.498 6.498 8 N -0.362 5.362 9 C -0.012 4.012 10 C -0.163 4.163 11 C -0.141 4.141 12 C 0.019 3.981 13 H 0.001 0.999 14 C -0.576 4.576 15 H 0.081 0.919 16 C -0.190 4.190 17 N -0.551 5.551 18 Si 0.783 3.217 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.191 1.191 22 C 0.023 3.977 23 C -0.116 4.116 24 N -0.092 5.092 25 O 0.024 5.976 26 C -0.025 4.025 27 C -0.119 4.119 28 N -0.242 5.242 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.243 0.757 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.055 0.945 44 H 0.139 0.861 45 H 0.147 0.853 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 21.421 -11.177 -1.729 24.224 hybrid contribution -1.011 0.690 0.074 1.226 sum 20.410 -10.487 -1.655 23.006 Atomic orbital electron populations 1.21645 0.94755 1.01382 1.01508 1.21853 0.96610 0.93195 1.03614 1.18825 0.82498 0.95655 0.88078 0.89043 1.45073 1.15964 1.61663 1.16587 1.15911 0.81842 0.78237 0.83564 1.90920 1.55601 1.64954 1.38274 1.47687 1.15154 1.63365 1.09967 1.21916 0.92754 0.98138 0.88428 1.21969 0.97426 0.95341 1.01550 1.21499 0.94674 1.00336 0.97620 1.18906 0.94480 0.91699 0.92997 0.99899 1.21469 0.97012 1.43719 0.95353 0.91935 1.25903 1.02853 0.95386 0.94827 1.70098 1.35549 1.48003 1.01450 0.85622 0.79570 0.79168 0.77369 1.19405 1.21515 1.19125 1.21609 0.79295 0.94722 1.02108 1.25623 0.99202 1.00591 0.86150 1.74548 0.90355 1.21277 1.23018 1.85262 1.23335 1.62184 1.26862 1.29928 0.96518 0.91915 0.84147 1.20819 0.88249 1.06535 0.96275 1.71898 1.02810 1.22202 1.27321 0.90976 0.94800 0.93731 0.89291 0.90426 0.75724 0.89815 0.89454 0.93614 0.87834 0.92958 0.92154 0.93176 0.90242 0.94517 0.86123 0.85331 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 8.58 71.98 0.62 -3.63 16 2 C -0.11 -3.00 5.59 30.59 0.17 -2.83 16 3 C 0.26 7.90 2.80 44.24 0.12 8.02 16 4 H 0.09 3.34 7.51 -2.39 -0.02 3.32 16 5 N -0.73 -24.23 4.93 -461.39 -2.28 -26.50 16 6 C 0.70 30.05 6.67 179.06 1.19 31.24 16 7 O -0.62 -32.08 13.33 -4.01 -0.05 -32.14 16 8 N -0.63 -26.20 2.97 -836.05 -2.48 -28.68 16 9 C 0.11 3.37 6.42 86.51 0.56 3.92 16 10 C -0.12 -3.90 6.10 30.82 0.19 -3.71 16 11 C -0.10 -4.10 5.11 30.62 0.16 -3.95 16 12 C 0.04 2.00 2.25 -11.46 -0.03 1.97 16 13 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 14 C -0.54 -30.05 8.57 25.60 0.22 -29.83 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.01 0.57 5.30 84.65 0.45 1.02 16 17 N -0.91 -56.50 11.39 21.45 0.24 -56.26 16 18 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 C 0.15 7.42 5.41 86.36 0.47 7.89 16 23 C 0.16 4.26 7.01 138.46 0.97 5.23 16 24 N -0.38 -9.38 11.85 -60.33 -0.72 -10.10 16 25 O 0.08 1.63 11.31 74.83 0.85 2.47 16 26 C 0.19 3.16 8.51 88.38 0.75 3.92 16 27 C -0.06 -0.23 10.51 71.24 0.75 0.52 16 28 N -0.51 -12.54 11.55 -303.22 -3.50 -16.04 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.03 1.26 5.76 -2.38 -0.01 1.25 16 31 H 0.04 1.56 7.92 -2.38 -0.02 1.54 16 32 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.40 11.54 5.84 -92.71 -0.54 10.99 16 35 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.09 2.17 5.64 -2.38 -0.01 2.16 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.08 4.85 5.11 -2.38 -0.01 4.83 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -77.98 366.68 1.14 -76.84 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.46 Total: 23.70 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.59 Total: 19.77 kcal Atomic # 7 Polarization: -128.85 SS G_CDS: -8.73 Total: -137.58 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: 0.79 Total: -29.67 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -77.98 1.14 -76.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469225272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.329 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds