Wall clock time and date at job start Tue Mar 31 2020 14:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47242 * 2 1 4 4 O 1.42908 * 109.46954 * 240.00147 * 2 1 3 5 5 C 1.35680 * 116.99878 * 270.00332 * 4 2 1 6 6 C 1.39002 * 120.01997 * 179.72219 * 5 4 2 7 7 N 1.32071 * 120.07363 * 179.73317 * 6 5 4 8 8 C 1.32064 * 120.13957 * 0.56416 * 7 6 5 9 9 C 1.39047 * 120.05132 * 359.69024 * 8 7 6 10 10 N 1.39403 * 120.03874 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99668 * 174.92447 * 10 9 8 12 12 O 1.21276 * 120.00093 * 5.08238 * 11 10 9 13 13 C 1.50700 * 119.99765 * 185.08631 * 11 10 9 14 14 H 1.08995 * 109.47119 * 319.99839 * 13 11 10 15 15 N 1.46901 * 109.46962 * 199.99382 * 13 11 10 16 16 C 1.52999 * 109.47184 * 79.99479 * 13 11 10 17 17 C 1.52999 * 109.47061 * 184.99887 * 16 13 11 18 18 C 1.53000 * 109.47015 * 180.02562 * 17 16 13 19 19 C 1.50700 * 109.47119 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99901 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00041 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00152 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00032 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46879 * 59.99740 * 23 21 19 25 25 H 1.48500 * 109.47304 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47100 * 300.00406 * 23 21 19 27 27 N 1.32545 * 120.02247 * 359.97438 * 5 4 2 28 28 H 1.09001 * 109.46688 * 59.99946 * 1 2 3 29 29 H 1.08997 * 109.47603 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47005 * 300.00096 * 1 2 3 31 31 H 1.08997 * 109.47133 * 120.00635 * 2 1 3 32 32 H 1.08994 * 109.46876 * 60.00037 * 3 2 1 33 33 H 1.09005 * 109.46851 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47114 * 300.00097 * 3 2 1 35 35 H 1.07999 * 119.96132 * 0.02562 * 6 5 4 36 36 H 1.08002 * 119.97424 * 179.71062 * 8 7 6 37 37 H 0.96994 * 120.00265 * 354.91901 * 10 9 8 38 38 H 1.00900 * 111.00273 * 300.00281 * 15 13 11 39 39 H 1.00909 * 110.99325 * 63.95609 * 15 13 11 40 40 H 1.08998 * 109.47305 * 305.00072 * 16 13 11 41 41 H 1.09007 * 109.47127 * 65.00135 * 16 13 11 42 42 H 1.09005 * 109.47022 * 299.99917 * 17 16 13 43 43 H 1.08997 * 109.47411 * 60.00312 * 17 16 13 44 44 H 1.08998 * 109.47007 * 299.99973 * 18 17 16 45 45 H 1.08998 * 109.47602 * 59.99849 * 18 17 16 46 46 H 0.97000 * 120.00461 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.2116 -2.0110 -1.0654 6 6 2.6687 -2.7297 -2.1638 7 7 2.8739 -4.0306 -2.0647 8 6 2.6350 -4.6547 -0.9256 9 6 2.1726 -3.9421 0.1751 10 7 1.9200 -4.6012 1.3773 11 6 1.5704 -3.8964 2.4717 12 8 1.3857 -2.7007 2.3894 13 6 1.4091 -4.5944 3.7975 14 1 0.9197 -5.5562 3.6447 15 7 0.5902 -3.7646 4.6913 16 6 2.7856 -4.8171 4.4274 17 6 2.6326 -5.6347 5.7115 18 6 4.0090 -5.8568 6.3417 19 6 3.8583 -6.6627 7.6062 20 1 2.8788 -6.9838 7.9284 21 6 4.9710 -6.9899 8.3518 22 7 6.1638 -6.5993 7.9592 23 14 4.7842 -7.9882 9.9196 24 1 4.1676 -9.3008 9.6001 25 1 6.1202 -8.2050 10.5305 26 1 3.9162 -7.2529 10.8741 27 7 1.9715 -2.6338 0.0798 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 2.8609 -2.2230 -3.0980 36 1 2.7992 -5.7194 -0.8489 37 1 1.9957 -5.5670 1.4261 38 1 1.0229 -2.8668 4.8487 39 1 -0.3451 -3.6565 4.3281 40 1 3.4227 -5.3568 3.7268 41 1 3.2381 -3.8535 4.6619 42 1 1.9954 -5.0949 6.4121 43 1 2.1801 -6.5982 5.4771 44 1 4.6464 -6.3964 5.6412 45 1 4.4611 -4.8932 6.5762 46 1 6.9467 -6.8298 8.4835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575813453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:05 Heat of formation + Delta-G solvation = -58.597307 kcal Electronic energy + Delta-G solvation = -26981.689655 eV Core-core repulsion = 23098.639754 eV Total energy + Delta-G solvation = -3883.049901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.61830 -41.09986 -39.77311 -37.29068 -36.45664 -35.25775 -34.84946 -33.94091 -33.12346 -31.01616 -29.56244 -28.26078 -27.23754 -25.98613 -25.08798 -23.83403 -22.67648 -21.76010 -21.28586 -19.99751 -18.94598 -18.43800 -18.08009 -17.80055 -17.58018 -17.22780 -16.87813 -16.46836 -16.27631 -15.82744 -15.59229 -15.39957 -15.13555 -14.61293 -14.50316 -14.27754 -14.01227 -13.66934 -13.50274 -13.29360 -13.14587 -13.07552 -12.87694 -12.74023 -12.68179 -12.48444 -12.39341 -12.20863 -12.16725 -11.76860 -11.62226 -11.38141 -11.23997 -11.01052 -10.96366 -10.51146 -10.37087 -9.67374 -9.32857 -8.16428 -6.26770 -0.29549 0.05724 1.40448 1.42437 1.44995 1.52771 1.59013 1.82191 2.43927 2.65840 2.92857 3.16890 3.30512 3.37435 3.49318 3.77222 3.85211 3.94614 3.96943 4.07461 4.13929 4.23347 4.30958 4.51661 4.60818 4.66804 4.68618 4.75094 4.79871 4.90087 4.92214 5.09663 5.14131 5.16585 5.27617 5.31310 5.35813 5.61905 5.73407 5.85719 5.95293 6.02328 6.04894 6.31059 6.32436 6.44414 6.68129 6.91527 7.00603 7.42459 8.95114 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.002369 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.405577 B =11818.989964 C =12396.451378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.075 3.925 3 C -0.144 4.144 4 O -0.298 6.298 5 C 0.292 3.708 6 C -0.002 4.002 7 N -0.390 5.390 8 C -0.014 4.014 9 C 0.342 3.658 10 N -0.639 5.639 11 C 0.478 3.522 12 O -0.511 6.511 13 C 0.095 3.905 14 H 0.134 0.866 15 N -0.815 5.815 16 C -0.095 4.095 17 C -0.083 4.083 18 C 0.021 3.979 19 C -0.539 4.539 20 H 0.061 0.939 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.962 3.038 24 H -0.264 1.264 25 H -0.286 1.286 26 H -0.269 1.269 27 N -0.518 5.518 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.197 0.803 36 H 0.209 0.791 37 H 0.442 0.558 38 H 0.346 0.654 39 H 0.351 0.649 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.060 0.940 44 H -0.007 1.007 45 H -0.018 1.018 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 8.789 -21.254 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.019 3.981 3 C -0.201 4.201 4 O -0.204 6.204 5 C 0.109 3.891 6 C -0.164 4.164 7 N -0.103 5.103 8 C -0.178 4.178 9 C 0.107 3.893 10 N -0.289 5.289 11 C 0.263 3.737 12 O -0.382 6.382 13 C -0.022 4.022 14 H 0.151 0.849 15 N -0.344 5.344 16 C -0.134 4.134 17 C -0.121 4.121 18 C -0.016 4.016 19 C -0.577 4.577 20 H 0.079 0.921 21 C -0.200 4.200 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.189 1.189 25 H -0.211 1.211 26 H -0.194 1.194 27 N -0.254 5.254 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.214 0.786 36 H 0.225 0.775 37 H 0.284 0.716 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.011 0.989 45 H 0.000 1.000 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.253 9.283 -20.800 25.864 hybrid contribution 0.328 -0.086 0.432 0.550 sum -11.925 9.196 -20.367 25.330 Atomic orbital electron populations 1.22065 0.94051 1.01537 1.03409 1.22535 0.95133 0.93689 0.86731 1.21894 1.01761 0.92215 1.04207 1.86306 1.79714 1.14963 1.39424 1.21072 0.91703 0.86196 0.90142 1.23055 1.04062 0.90005 0.99294 1.68440 1.09609 1.08240 1.24042 1.23559 1.03501 1.03157 0.87539 1.19589 0.92964 0.88280 0.88426 1.43825 1.66308 1.12474 1.06338 1.23041 0.75144 0.88389 0.87151 1.90748 1.46296 1.15755 1.85388 1.21680 0.96733 0.98683 0.85063 0.84882 1.59047 1.06169 1.21845 1.47383 1.21482 0.93782 1.00181 0.97923 1.21277 0.96975 0.98683 0.95147 1.19055 0.93708 0.94303 0.94533 1.21720 0.93346 1.33695 1.08942 0.92074 1.25982 0.95022 0.97428 1.01598 1.70092 0.98908 1.47857 1.40826 0.85546 0.77214 0.79390 0.79181 1.18877 1.21122 1.19377 1.67846 1.22097 1.10002 1.25449 0.90915 0.94452 0.90132 0.91131 0.89113 0.92199 0.90403 0.78622 0.77483 0.71630 0.84007 0.83562 0.90587 0.93798 0.92520 0.92132 0.98888 1.00001 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.53 71.98 0.69 -2.27 16 2 C 0.08 1.63 3.12 30.60 0.10 1.72 16 3 C -0.14 -2.27 9.56 71.98 0.69 -1.58 16 4 O -0.30 -6.87 9.77 -89.97 -0.88 -7.75 16 5 C 0.29 7.03 7.46 84.77 0.63 7.66 16 6 C 0.00 -0.04 11.17 84.84 0.95 0.91 16 7 N -0.39 -7.86 10.48 -194.27 -2.04 -9.90 16 8 C -0.01 -0.24 11.07 84.85 0.94 0.70 16 9 C 0.34 7.44 7.42 132.81 0.99 8.43 16 10 N -0.64 -11.54 5.39 -308.20 -1.66 -13.20 16 11 C 0.48 11.14 7.03 87.66 0.62 11.76 16 12 O -0.51 -15.28 14.45 -3.02 -0.04 -15.32 16 13 C 0.09 2.09 3.15 44.17 0.14 2.23 16 14 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 15 N -0.82 -19.04 8.44 -171.80 -1.45 -20.49 16 16 C -0.10 -2.83 4.84 30.59 0.15 -2.68 16 17 C -0.08 -3.16 5.04 30.59 0.15 -3.00 16 18 C 0.02 1.09 4.97 29.85 0.15 1.24 16 19 C -0.54 -30.39 9.11 25.60 0.23 -30.15 16 20 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 21 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 22 N -0.94 -57.19 13.29 21.45 0.28 -56.90 16 23 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 N -0.52 -13.69 6.39 -305.36 -1.95 -15.64 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.97 6.91 -2.39 -0.02 1.95 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.44 4.40 8.71 -92.71 -0.81 3.59 16 38 H 0.35 8.84 8.58 -89.69 -0.77 8.07 16 39 H 0.35 6.84 9.06 -89.69 -0.81 6.03 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.06 2.24 7.75 -2.38 -0.02 2.22 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 45 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -74.74 388.88 -0.21 -74.96 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -1.38 Total: 22.87 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 6.88 Total: -4.73 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -6.81 Total: -116.14 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.92 Total: -23.08 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.74 -0.21 -74.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575813453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.359 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds