Wall clock time and date at job start Tue Mar 31 2020 14:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 O 1.42907 * 109.47088 * 120.00232 * 2 1 3 5 5 C 1.35667 * 117.00072 * 149.99893 * 4 2 1 6 6 C 1.38999 * 120.02599 * 179.97438 * 5 4 2 7 7 N 1.32066 * 120.08370 * 179.97438 * 6 5 4 8 8 C 1.32069 * 120.13733 * 359.97438 * 7 6 5 9 9 C 1.39044 * 120.04881 * 359.97438 * 8 7 6 10 10 N 1.39402 * 120.03623 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99738 * 185.03746 * 10 9 8 12 12 O 1.21282 * 119.99944 * 354.78470 * 11 10 9 13 13 C 1.50697 * 120.00086 * 175.05673 * 11 10 9 14 14 H 1.09004 * 109.47040 * 39.72712 * 13 11 10 15 15 N 1.46900 * 109.47559 * 159.72578 * 13 11 10 16 16 C 1.52996 * 109.47399 * 279.73106 * 13 11 10 17 17 C 1.52998 * 109.47440 * 175.00150 * 16 13 11 18 18 C 1.53002 * 109.46959 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46877 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00171 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99741 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00231 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46809 * 59.99885 * 23 21 19 25 25 H 1.48498 * 109.47330 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46703 * 300.00146 * 23 21 19 27 27 N 1.32553 * 120.02601 * 0.20793 * 5 4 2 28 28 H 1.08997 * 109.47515 * 299.99989 * 1 2 3 29 29 H 1.08998 * 109.47198 * 60.00022 * 1 2 3 30 30 H 1.09006 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47158 * 239.99729 * 2 1 3 32 32 H 1.09000 * 109.47228 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47562 * 300.00099 * 3 2 1 34 34 H 1.09001 * 109.47147 * 60.00340 * 3 2 1 35 35 H 1.08001 * 119.95908 * 0.02562 * 6 5 4 36 36 H 1.08005 * 119.97108 * 179.97438 * 8 7 6 37 37 H 0.96995 * 120.00210 * 5.04855 * 10 9 8 38 38 H 1.00900 * 110.99341 * 59.99736 * 15 13 11 39 39 H 1.00897 * 111.00422 * 183.95603 * 15 13 11 40 40 H 1.09007 * 109.46944 * 295.00137 * 16 13 11 41 41 H 1.08998 * 109.47361 * 54.99264 * 16 13 11 42 42 H 1.08998 * 109.46634 * 299.99472 * 17 16 13 43 43 H 1.08995 * 109.47623 * 59.99756 * 17 16 13 44 44 H 1.08998 * 109.47038 * 299.99250 * 18 17 16 45 45 H 1.08994 * 109.47842 * 59.99708 * 18 17 16 46 46 H 0.97008 * 119.99491 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1986 -1.3130 1.0653 6 6 3.7214 -1.9881 2.1621 7 7 4.8817 -2.6113 2.0644 8 6 5.5489 -2.5957 0.9247 9 6 5.0306 -1.9230 -0.1763 10 7 5.7352 -1.9063 -1.3790 11 6 5.2837 -1.1710 -2.4144 12 8 4.2168 -0.6000 -2.3329 13 6 6.1015 -1.0634 -3.6755 14 1 6.5475 -2.0317 -3.9031 15 7 5.2350 -0.6500 -4.7874 16 6 7.2085 -0.0259 -3.4786 17 6 8.1140 -0.0058 -4.7118 18 6 9.2206 1.0323 -4.5150 19 6 10.1128 1.0516 -5.7294 20 1 9.9111 0.3894 -6.5583 21 6 11.1868 1.9147 -5.7821 22 7 11.4328 2.7207 -4.7724 23 14 12.2932 1.9382 -7.2870 24 1 11.4907 2.2903 -8.4859 25 1 13.3672 2.9458 -7.0962 26 1 12.9015 0.5966 -7.4751 27 7 3.8680 -1.2905 -0.0785 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1777 -2.0038 3.0951 36 1 6.4977 -3.1059 0.8479 37 1 6.5504 -2.4239 -1.4708 38 1 4.8094 0.2455 -4.6004 39 1 5.7461 -0.6330 -5.6572 40 1 6.7627 0.9590 -3.3391 41 1 7.7978 -0.2857 -2.5993 42 1 8.5598 -0.9906 -4.8511 43 1 7.5247 0.2541 -5.5911 44 1 8.7745 2.0170 -4.3759 45 1 9.8101 0.7730 -3.6356 46 1 12.1882 3.3282 -4.8097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575813454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:09 Heat of formation + Delta-G solvation = -32.978967 kcal Electronic energy + Delta-G solvation = -27007.529520 eV Core-core repulsion = 23125.590514 eV Total energy + Delta-G solvation = -3881.939007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71299 -40.04221 -38.86703 -36.33381 -35.39180 -33.98797 -33.45168 -33.04242 -31.33590 -30.13576 -28.01498 -27.46066 -26.04995 -24.96236 -23.93160 -22.54829 -21.77414 -20.40744 -20.24159 -19.06980 -18.02898 -17.17444 -17.00866 -16.71098 -16.42040 -16.21916 -15.30024 -15.02711 -14.85957 -14.74571 -14.57209 -14.36396 -13.87707 -13.76747 -13.40088 -13.22171 -12.74186 -12.60548 -12.53514 -12.24624 -12.17669 -12.00454 -11.75769 -11.68875 -11.32989 -11.32074 -10.88250 -10.87235 -10.83992 -10.64395 -10.25120 -10.01389 -9.86952 -9.52658 -9.25770 -9.19426 -8.61506 -8.46227 -8.43078 -6.08122 -4.11585 0.60587 0.95555 2.39816 2.51581 2.68399 3.27381 3.32555 3.34286 3.54509 3.81530 4.15324 4.18836 4.38366 4.62854 4.67827 4.68655 4.77784 4.92246 5.03496 5.05092 5.11158 5.15533 5.27722 5.35807 5.45677 5.54645 5.62248 5.63161 5.73346 5.82146 5.87777 6.03789 6.13178 6.17650 6.46032 6.59273 6.62832 6.92793 6.93467 7.03911 7.22150 7.45745 7.55638 7.58619 7.67744 7.90186 7.98939 8.31630 8.95289 9.53274 11.02987 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.002386 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.282300 B =11731.759051 C =12298.396603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.162 4.162 4 O -0.294 6.294 5 C 0.313 3.687 6 C -0.007 4.007 7 N -0.376 5.376 8 C -0.029 4.029 9 C 0.367 3.633 10 N -0.655 5.655 11 C 0.515 3.485 12 O -0.464 6.464 13 C 0.079 3.921 14 H 0.103 0.897 15 N -0.829 5.829 16 C -0.148 4.148 17 C -0.108 4.108 18 C 0.022 3.978 19 C -0.524 4.524 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 N -0.494 5.494 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.424 0.576 38 H 0.350 0.650 39 H 0.355 0.645 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.014 0.986 45 H 0.016 0.984 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.812 -9.905 11.391 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 C -0.220 4.220 4 O -0.200 6.200 5 C 0.130 3.870 6 C -0.170 4.170 7 N -0.090 5.090 8 C -0.193 4.193 9 C 0.132 3.868 10 N -0.304 5.304 11 C 0.301 3.699 12 O -0.330 6.330 13 C -0.036 4.036 14 H 0.121 0.879 15 N -0.362 5.362 16 C -0.187 4.187 17 C -0.146 4.146 18 C -0.015 4.015 19 C -0.563 4.563 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 N -0.230 5.230 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.191 0.809 36 H 0.190 0.810 37 H 0.262 0.738 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.095 -9.890 11.759 24.510 hybrid contribution 1.930 0.785 -1.166 2.387 sum -17.166 -9.105 10.593 22.131 Atomic orbital electron populations 1.21901 0.92809 1.02860 1.03008 1.22502 0.94305 0.93142 0.87896 1.22137 1.02270 0.95254 1.02327 1.86316 1.30608 1.63760 1.39276 1.20830 0.86681 0.89651 0.89860 1.22668 0.94749 1.00704 0.98930 1.68337 1.04677 1.12542 1.23442 1.22995 1.02887 1.05010 0.88397 1.19228 0.88711 0.91547 0.87336 1.43810 1.27785 1.48519 1.10253 1.21146 0.86619 0.77905 0.84251 1.90738 1.20510 1.41724 1.80076 1.21439 0.91810 1.01281 0.89111 0.87874 1.58686 1.35669 1.37846 1.04012 1.22436 0.96541 0.98273 1.01495 1.21655 0.97289 1.01262 0.94395 1.19072 0.92066 0.93186 0.97146 1.21191 1.11338 1.20944 1.02780 0.92713 1.25035 0.97686 0.95475 0.96239 1.69953 1.29372 1.23298 1.30769 0.86650 0.80275 0.77804 0.83235 1.20204 1.21256 1.20193 1.67930 1.07788 1.22600 1.24645 0.91719 0.90334 0.91944 0.88165 0.92029 0.90922 0.92344 0.80856 0.80987 0.73812 0.83640 0.82958 0.91645 0.91480 0.92898 0.93255 0.96732 0.96611 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.56 37.16 0.36 -0.87 16 2 C 0.08 0.86 3.11 -26.73 -0.08 0.78 16 3 C -0.16 -1.76 9.53 37.16 0.35 -1.41 16 4 O -0.29 -3.47 9.77 -18.70 -0.18 -3.65 16 5 C 0.31 3.88 7.46 -16.96 -0.13 3.75 16 6 C -0.01 -0.08 11.17 -17.17 -0.19 -0.27 16 7 N -0.38 -4.18 10.48 -12.76 -0.13 -4.31 16 8 C -0.03 -0.29 11.07 -17.15 -0.19 -0.48 16 9 C 0.37 4.32 7.42 -154.40 -1.15 3.17 16 10 N -0.66 -6.77 5.39 -11.35 -0.06 -6.83 16 11 C 0.52 6.71 7.04 -10.99 -0.08 6.64 16 12 O -0.46 -7.43 14.54 5.56 0.08 -7.35 16 13 C 0.08 0.96 3.21 -68.87 -0.22 0.74 16 14 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 15 N -0.83 -10.44 8.94 -5.66 -0.05 -10.49 16 16 C -0.15 -2.15 4.84 -26.73 -0.13 -2.28 16 17 C -0.11 -1.93 4.92 -26.73 -0.13 -2.07 16 18 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 19 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 23 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 N -0.49 -6.72 6.39 -12.24 -0.08 -6.80 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 1.35 7.00 -51.93 -0.36 0.99 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.42 2.81 8.71 -40.82 -0.36 2.46 16 38 H 0.35 4.60 8.58 -39.29 -0.34 4.26 16 39 H 0.35 4.20 7.55 -39.29 -0.30 3.91 16 40 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.85 6.87 -51.93 -0.36 0.50 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -33.21 387.10 -8.18 -41.39 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.17 Total: 6.71 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.14 Total: -4.95 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.41 Total: -54.08 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.10 Total: -10.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.21 -8.18 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575813454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.412 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds