Wall clock time and date at job start Tue Mar 31 2020 14:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 O 1.42907 * 109.47088 * 120.00232 * 2 1 3 5 5 C 1.35667 * 117.00072 * 149.99893 * 4 2 1 6 6 C 1.38999 * 120.02599 * 179.97438 * 5 4 2 7 7 N 1.32066 * 120.08370 * 179.97438 * 6 5 4 8 8 C 1.32069 * 120.13733 * 359.97438 * 7 6 5 9 9 C 1.39044 * 120.04881 * 359.97438 * 8 7 6 10 10 N 1.39402 * 120.03623 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99738 * 185.03746 * 10 9 8 12 12 O 1.21282 * 119.99944 * 354.78470 * 11 10 9 13 13 C 1.50697 * 120.00086 * 175.05673 * 11 10 9 14 14 H 1.09004 * 109.47040 * 39.72712 * 13 11 10 15 15 N 1.46900 * 109.47559 * 159.72578 * 13 11 10 16 16 C 1.52996 * 109.47399 * 279.73106 * 13 11 10 17 17 C 1.52998 * 109.47440 * 175.00150 * 16 13 11 18 18 C 1.53002 * 109.46959 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46877 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00171 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99741 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00231 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46809 * 59.99885 * 23 21 19 25 25 H 1.48498 * 109.47330 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46703 * 300.00146 * 23 21 19 27 27 N 1.32553 * 120.02601 * 0.20793 * 5 4 2 28 28 H 1.08997 * 109.47515 * 299.99989 * 1 2 3 29 29 H 1.08998 * 109.47198 * 60.00022 * 1 2 3 30 30 H 1.09006 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47158 * 239.99729 * 2 1 3 32 32 H 1.09000 * 109.47228 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47562 * 300.00099 * 3 2 1 34 34 H 1.09001 * 109.47147 * 60.00340 * 3 2 1 35 35 H 1.08001 * 119.95908 * 0.02562 * 6 5 4 36 36 H 1.08005 * 119.97108 * 179.97438 * 8 7 6 37 37 H 0.96995 * 120.00210 * 5.04855 * 10 9 8 38 38 H 1.00900 * 110.99341 * 59.99736 * 15 13 11 39 39 H 1.00897 * 111.00422 * 183.95603 * 15 13 11 40 40 H 1.09007 * 109.46944 * 295.00137 * 16 13 11 41 41 H 1.08998 * 109.47361 * 54.99264 * 16 13 11 42 42 H 1.08998 * 109.46634 * 299.99472 * 17 16 13 43 43 H 1.08995 * 109.47623 * 59.99756 * 17 16 13 44 44 H 1.08998 * 109.47038 * 299.99250 * 18 17 16 45 45 H 1.08994 * 109.47842 * 59.99708 * 18 17 16 46 46 H 0.97008 * 119.99491 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1986 -1.3130 1.0653 6 6 3.7214 -1.9881 2.1621 7 7 4.8817 -2.6113 2.0644 8 6 5.5489 -2.5957 0.9247 9 6 5.0306 -1.9230 -0.1763 10 7 5.7352 -1.9063 -1.3790 11 6 5.2837 -1.1710 -2.4144 12 8 4.2168 -0.6000 -2.3329 13 6 6.1015 -1.0634 -3.6755 14 1 6.5475 -2.0317 -3.9031 15 7 5.2350 -0.6500 -4.7874 16 6 7.2085 -0.0259 -3.4786 17 6 8.1140 -0.0058 -4.7118 18 6 9.2206 1.0323 -4.5150 19 6 10.1128 1.0516 -5.7294 20 1 9.9111 0.3894 -6.5583 21 6 11.1868 1.9147 -5.7821 22 7 11.4328 2.7207 -4.7724 23 14 12.2932 1.9382 -7.2870 24 1 11.4907 2.2903 -8.4859 25 1 13.3672 2.9458 -7.0962 26 1 12.9015 0.5966 -7.4751 27 7 3.8680 -1.2905 -0.0785 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1777 -2.0038 3.0951 36 1 6.4977 -3.1059 0.8479 37 1 6.5504 -2.4239 -1.4708 38 1 4.8094 0.2455 -4.6004 39 1 5.7461 -0.6330 -5.6572 40 1 6.7627 0.9590 -3.3391 41 1 7.7978 -0.2857 -2.5993 42 1 8.5598 -0.9906 -4.8511 43 1 7.5247 0.2541 -5.5911 44 1 8.7745 2.0170 -4.3759 45 1 9.8101 0.7730 -3.6356 46 1 12.1882 3.3282 -4.8097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575813454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:08 Heat of formation + Delta-G solvation = -57.557843 kcal Electronic energy + Delta-G solvation = -27008.595340 eV Core-core repulsion = 23125.590514 eV Total energy + Delta-G solvation = -3883.004827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.58617 -41.01873 -39.73924 -37.54374 -36.39415 -35.28968 -34.83044 -33.92513 -32.99637 -31.00489 -29.44166 -28.23567 -27.39208 -25.98830 -25.07125 -23.93888 -22.67051 -21.87766 -21.26190 -19.96207 -18.99378 -18.46757 -18.09165 -17.78879 -17.61263 -17.14922 -16.54453 -16.30846 -16.12564 -15.97724 -15.61716 -15.37576 -15.02185 -14.75520 -14.48864 -14.27004 -13.98659 -13.70373 -13.68002 -13.45856 -13.26678 -13.06089 -12.92709 -12.71383 -12.64847 -12.55900 -12.44455 -12.35809 -12.16313 -11.73955 -11.50465 -11.46810 -11.33080 -11.05862 -10.92182 -10.55638 -10.14517 -9.68931 -9.30293 -8.20677 -6.31846 -0.26076 0.08550 1.40568 1.42778 1.50089 1.51322 1.56456 1.84184 2.40501 2.68646 2.92569 3.13091 3.33637 3.40074 3.62413 3.75665 3.87499 3.94932 3.97231 4.05822 4.10089 4.25727 4.33360 4.38815 4.54290 4.62789 4.71552 4.75286 4.77336 4.82975 4.93074 5.00295 5.12367 5.18013 5.19492 5.23966 5.33814 5.52133 5.73199 5.76543 5.85355 6.04018 6.07896 6.23344 6.37318 6.45738 6.71957 6.86586 7.07944 7.38170 8.90713 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.002386 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.282300 B =11731.759051 C =12298.396603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 C -0.156 4.156 4 O -0.298 6.298 5 C 0.292 3.708 6 C -0.002 4.002 7 N -0.389 5.389 8 C -0.013 4.013 9 C 0.346 3.654 10 N -0.641 5.641 11 C 0.514 3.486 12 O -0.499 6.499 13 C 0.091 3.909 14 H 0.132 0.868 15 N -0.831 5.831 16 C -0.135 4.135 17 C -0.094 4.094 18 C 0.023 3.977 19 C -0.541 4.541 20 H 0.065 0.935 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.264 1.264 27 N -0.519 5.519 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.198 0.802 36 H 0.209 0.791 37 H 0.441 0.559 38 H 0.345 0.655 39 H 0.360 0.640 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.056 0.944 44 H -0.018 1.018 45 H -0.008 1.008 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -11.616 11.066 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.021 3.979 3 C -0.213 4.213 4 O -0.204 6.204 5 C 0.109 3.891 6 C -0.164 4.164 7 N -0.103 5.103 8 C -0.177 4.177 9 C 0.111 3.889 10 N -0.291 5.291 11 C 0.300 3.700 12 O -0.368 6.368 13 C -0.024 4.024 14 H 0.150 0.850 15 N -0.364 5.364 16 C -0.175 4.175 17 C -0.131 4.131 18 C -0.014 4.014 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.200 4.200 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.192 1.192 25 H -0.213 1.213 26 H -0.189 1.189 27 N -0.255 5.255 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.214 0.786 36 H 0.226 0.774 37 H 0.283 0.717 38 H 0.158 0.842 39 H 0.176 0.824 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.001 0.999 45 H 0.011 0.989 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.080 -11.643 11.441 25.110 hybrid contribution 1.940 1.313 -1.012 2.552 sum -17.140 -10.330 10.429 22.567 Atomic orbital electron populations 1.21885 0.90477 1.03386 1.04145 1.22513 0.96000 0.92568 0.86780 1.22081 1.00296 0.95666 1.03294 1.86299 1.30630 1.63981 1.39451 1.21076 0.87077 0.90715 0.90192 1.23050 0.94628 0.99505 0.99233 1.68443 1.04947 1.13032 1.23848 1.23541 1.03499 1.03447 0.87237 1.19518 0.88771 0.92375 0.88249 1.43615 1.28135 1.48075 1.09318 1.21272 0.86256 0.77681 0.84807 1.90738 1.22097 1.43257 1.80713 1.21370 0.90660 1.01576 0.88796 0.84993 1.58705 1.35723 1.37599 1.04375 1.22245 0.96760 0.98307 1.00208 1.21427 0.95832 0.99715 0.96172 1.19007 0.93420 0.93571 0.95440 1.21712 1.11663 1.20763 1.03774 0.91724 1.25994 0.99512 0.95155 0.99368 1.70098 1.30165 1.24289 1.33062 0.85537 0.78143 0.78215 0.79391 1.19233 1.21277 1.18873 1.67856 1.08796 1.23227 1.25639 0.90575 0.89144 0.91728 0.90915 0.94916 0.90235 0.91016 0.78570 0.77426 0.71686 0.84164 0.82418 0.93639 0.90757 0.91305 0.92577 0.99945 0.98925 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.56 71.98 0.69 -1.54 16 2 C 0.08 1.75 3.11 30.59 0.10 1.85 16 3 C -0.16 -3.47 9.53 71.98 0.69 -2.79 16 4 O -0.30 -7.06 9.77 -89.83 -0.88 -7.94 16 5 C 0.29 7.25 7.46 84.77 0.63 7.88 16 6 C 0.00 -0.04 11.17 84.84 0.95 0.91 16 7 N -0.39 -8.00 10.48 -194.28 -2.04 -10.03 16 8 C -0.01 -0.24 11.07 84.85 0.94 0.70 16 9 C 0.35 7.83 7.42 132.81 0.99 8.82 16 10 N -0.64 -12.35 5.39 -308.20 -1.66 -14.02 16 11 C 0.51 13.02 7.04 87.66 0.62 13.63 16 12 O -0.50 -16.23 14.54 -3.04 -0.04 -16.28 16 13 C 0.09 2.08 3.21 44.17 0.14 2.22 16 14 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 15 N -0.83 -20.06 8.94 -171.81 -1.54 -21.59 16 16 C -0.14 -3.84 4.84 30.59 0.15 -3.69 16 17 C -0.09 -3.26 4.92 30.59 0.15 -3.11 16 18 C 0.02 1.12 4.97 29.85 0.15 1.27 16 19 C -0.54 -29.37 9.11 25.60 0.23 -29.13 16 20 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 21 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 22 N -0.94 -56.19 13.29 21.45 0.28 -55.90 16 23 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 27 N -0.52 -14.29 6.39 -305.37 -1.95 -16.24 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.97 16 31 H 0.07 2.06 7.00 -2.39 -0.02 2.04 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.20 2.90 8.06 -2.91 -0.02 2.87 16 36 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.44 4.77 8.71 -92.71 -0.81 3.96 16 38 H 0.35 9.05 8.58 -89.69 -0.77 8.28 16 39 H 0.36 7.96 7.55 -89.70 -0.68 7.28 16 40 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 1.87 6.87 -2.39 -0.02 1.85 16 44 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 45 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -73.66 387.10 -0.16 -73.82 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -1.24 Total: 25.81 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 6.88 Total: -2.67 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -6.90 Total: -117.78 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.92 Total: -24.22 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -73.66 -0.16 -73.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575813454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.266 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds