Wall clock time and date at job start Tue Mar 31 2020 14:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.52517 * 2 1 4 4 C 1.53120 * 109.51993 * 239.87239 * 2 1 3 5 5 C 1.53039 * 109.27441 * 182.37963 * 4 2 1 6 6 N 1.46845 * 109.52506 * 59.17908 * 5 4 2 7 7 C 1.38586 * 111.00189 * 174.16050 * 6 5 4 8 8 N 1.31220 * 126.47226 * 236.21585 * 7 6 5 9 9 N 1.28522 * 109.85762 * 180.25702 * 8 7 6 10 10 C 1.30301 * 110.05317 * 359.74409 * 9 8 7 11 11 C 1.50705 * 126.34569 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47019 * 269.96031 * 11 10 9 13 13 C 1.50696 * 109.47023 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00239 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99676 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99607 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00280 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46720 * 90.00106 * 17 15 13 19 19 H 1.48498 * 109.46827 * 209.99760 * 17 15 13 20 20 H 1.48496 * 109.46818 * 330.00012 * 17 15 13 21 21 N 1.36446 * 126.47158 * 56.04334 * 7 6 5 22 22 C 1.46506 * 127.13855 * 0.02562 * 21 7 6 23 23 C 1.46847 * 111.19887 * 298.25975 * 6 5 4 24 24 C 1.53033 * 109.52364 * 61.74016 * 23 6 5 25 25 H 1.09002 * 109.53776 * 60.78437 * 24 23 6 26 26 C 1.50707 * 109.50026 * 180.88288 * 24 23 6 27 27 O 1.20831 * 119.99812 * 119.80590 * 26 24 23 28 28 O 1.34223 * 119.99945 * 299.79757 * 26 24 23 29 29 H 1.09002 * 109.47027 * 180.12501 * 1 2 3 30 30 H 1.09003 * 109.47472 * 300.12832 * 1 2 3 31 31 H 1.09001 * 109.46904 * 60.12911 * 1 2 3 32 32 H 1.08995 * 109.50827 * 62.44045 * 4 2 1 33 33 H 1.09005 * 109.53680 * 302.33615 * 4 2 1 34 34 H 1.09002 * 109.46154 * 299.16396 * 5 4 2 35 35 H 1.09005 * 109.45552 * 179.18730 * 5 4 2 36 36 H 1.09006 * 109.47108 * 29.95783 * 11 10 9 37 37 H 1.08997 * 109.47207 * 149.96327 * 11 10 9 38 38 H 1.08999 * 109.47059 * 300.00224 * 12 11 10 39 39 H 1.08997 * 109.46889 * 60.00102 * 12 11 10 40 40 H 0.97003 * 119.99793 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.46871 * 269.70572 * 22 21 7 42 42 H 1.08994 * 109.46947 * 29.70280 * 22 21 7 43 43 H 1.08997 * 109.47271 * 149.70797 * 22 21 7 44 44 H 1.09002 * 109.46623 * 181.75825 * 23 6 5 45 45 H 1.09006 * 109.45868 * 301.72121 * 23 6 5 46 46 H 0.96702 * 117.00202 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7244 -1.2482 5 6 3.5708 -0.7732 -1.2128 6 7 4.0115 -1.4767 -0.0015 7 6 5.3860 -1.6537 -0.0022 8 7 6.0257 -2.7944 0.1055 9 7 7.2939 -2.5885 0.0726 10 6 7.5365 -1.3155 -0.0624 11 6 8.8954 -0.6689 -0.1427 12 6 9.3684 -0.2995 1.2648 13 6 10.7270 0.3476 1.1845 14 1 11.2054 0.4817 0.2256 15 6 11.3591 0.7686 2.3352 16 7 12.5449 1.3329 2.2652 17 14 10.5319 0.5361 3.9939 18 1 10.9190 -0.7813 4.5596 19 1 10.9616 1.6169 4.9171 20 1 9.0576 0.5877 3.8232 21 7 6.3297 -0.6751 -0.1184 22 6 6.0982 0.7640 -0.2659 23 6 3.5721 -0.7736 1.2105 24 6 2.0430 -0.7249 1.2474 25 1 1.6462 -1.7399 1.2674 26 6 1.5929 0.0157 2.4804 27 8 0.9298 1.0201 2.3735 28 8 1.9285 -0.4406 3.6972 29 1 -0.3633 -1.0277 0.0022 30 1 -0.3634 0.5158 0.8888 31 1 -0.3633 0.5118 -0.8912 32 1 1.7152 -0.1885 -2.1395 33 1 1.6455 -1.7397 -1.2685 34 1 3.9666 0.2425 -1.2071 35 1 3.9377 -1.3010 -2.0931 36 1 9.6031 -1.3651 -0.5928 37 1 8.8337 0.2319 -0.7532 38 1 8.6607 0.3967 1.7149 39 1 9.4302 -1.2003 1.8753 40 1 12.9899 1.6287 3.0748 41 1 6.0313 1.0145 -1.3246 42 1 5.1667 1.0349 0.2311 43 1 6.9242 1.3131 0.1859 44 1 3.9399 -1.3016 2.0903 45 1 3.9679 0.2420 1.2048 46 1 1.6171 0.0683 4.4583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589362360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:02 Heat of formation + Delta-G solvation = -12.328989 kcal Electronic energy + Delta-G solvation = -28159.887313 eV Core-core repulsion = 24278.843757 eV Total energy + Delta-G solvation = -3881.043557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.87476 -41.15732 -39.19709 -36.69052 -35.32410 -34.92391 -33.66495 -31.96973 -31.86183 -29.68600 -28.19429 -27.40819 -25.61341 -25.07349 -23.05479 -22.39405 -21.67877 -21.02568 -20.27071 -19.96520 -18.45676 -17.77525 -16.99833 -16.70146 -16.55894 -16.02320 -15.77202 -15.31660 -14.91007 -14.70167 -14.37099 -14.24459 -13.84466 -13.50527 -13.44269 -13.31500 -13.11222 -12.87302 -12.67790 -12.54740 -12.39577 -11.98884 -11.82659 -11.66232 -11.37353 -11.31286 -11.26111 -11.14143 -10.96107 -10.61005 -10.48347 -10.39162 -10.04989 -9.98458 -9.90648 -9.36076 -9.12855 -8.64275 -8.63949 -6.14900 -4.14829 1.68989 1.88740 2.40372 2.59347 3.10360 3.16897 3.25089 3.32541 3.34993 3.99074 4.11773 4.27983 4.36176 4.39449 4.53493 4.68373 4.81682 4.88717 4.91100 4.93360 4.94510 5.00683 5.17127 5.18776 5.23101 5.27555 5.29938 5.34846 5.43432 5.55313 5.60414 5.78912 5.86315 5.91061 6.00309 6.10715 6.17488 6.21055 6.32248 6.40087 6.65700 7.05790 7.17050 7.25021 7.48106 7.63307 8.38849 8.88120 9.03519 9.46575 10.97936 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.003385 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.058437 B = 8270.920833 C = 9282.223822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.079 4.079 3 H 0.079 0.921 4 C -0.109 4.109 5 C 0.047 3.953 6 N -0.432 5.432 7 C 0.315 3.685 8 N -0.260 5.260 9 N -0.297 5.297 10 C 0.217 3.783 11 C -0.025 4.025 12 C -0.003 4.003 13 C -0.525 4.525 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.878 3.122 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.269 1.269 21 N -0.502 5.502 22 C 0.065 3.935 23 C 0.064 3.936 24 C -0.072 4.072 25 H 0.125 0.875 26 C 0.487 3.513 27 O -0.507 6.507 28 O -0.512 6.512 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.012 0.988 39 H 0.022 0.978 40 H 0.265 0.735 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.048 0.952 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.900 0.045 -4.731 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.098 4.098 3 H 0.098 0.902 4 C -0.146 4.146 5 C -0.081 4.081 6 N -0.156 5.156 7 C -0.040 4.040 8 N -0.101 5.101 9 N -0.136 5.136 10 C -0.051 4.051 11 C -0.065 4.065 12 C -0.042 4.042 13 C -0.562 4.562 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.705 3.295 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.194 1.194 21 N -0.199 5.199 22 C -0.078 4.078 23 C -0.064 4.064 24 C -0.091 4.091 25 H 0.143 0.857 26 C 0.328 3.672 27 O -0.395 6.395 28 O -0.323 6.323 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.066 0.934 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -25.808 -1.776 -4.854 26.320 hybrid contribution -0.457 2.493 1.394 2.893 sum -26.265 0.717 -3.460 26.501 Atomic orbital electron populations 1.22000 0.93784 1.02120 1.03448 1.21128 0.97104 0.99429 0.92118 0.90230 1.21683 0.93288 1.02203 0.97471 1.22433 0.96692 0.97100 0.91833 1.58826 1.03464 1.50230 1.03089 1.22680 0.86950 0.85969 1.08392 1.74442 0.99044 1.19355 1.17295 1.74250 1.06625 1.12924 1.19846 1.25632 0.89381 0.89968 1.00084 1.20273 0.85153 0.99193 1.01853 1.19543 0.97183 0.96675 0.90798 1.20998 1.00559 1.39211 0.95472 0.90561 1.24964 0.94603 0.94417 0.99045 1.69897 1.14169 1.40666 1.28917 0.86812 0.80202 0.78251 0.84211 1.19929 1.21267 1.19410 1.47219 1.07921 1.09057 1.55712 1.22285 1.04371 0.77650 1.03515 1.22182 0.92951 0.97877 0.93402 1.21140 0.96303 1.01891 0.89786 0.85716 1.23277 0.76347 0.82801 0.84762 1.90693 1.36602 1.25056 1.87180 1.84572 1.73232 1.57656 1.16886 0.92658 0.90658 0.92185 0.89893 0.89945 0.93553 0.89328 0.88525 0.90584 0.96999 0.95967 0.92534 0.90012 0.90098 0.87830 0.88190 0.93367 0.72892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 8.91 37.16 0.33 -0.72 16 2 C -0.08 -0.56 1.92 -90.50 -0.17 -0.74 16 3 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 4 C -0.11 -0.70 5.38 -26.65 -0.14 -0.84 16 5 C 0.05 0.40 5.13 -3.83 -0.02 0.38 16 6 N -0.43 -5.00 4.70 -174.55 -0.82 -5.82 16 7 C 0.31 4.84 6.65 -318.87 -2.12 2.72 16 8 N -0.26 -4.95 12.23 30.31 0.37 -4.58 16 9 N -0.30 -6.04 12.18 32.99 0.40 -5.64 16 10 C 0.22 3.96 7.32 -154.01 -1.13 2.83 16 11 C -0.02 -0.47 5.36 -27.88 -0.15 -0.62 16 12 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 13 C -0.52 -14.21 9.66 -34.44 -0.33 -14.55 16 14 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 17 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 N -0.50 -7.51 3.21 -121.46 -0.39 -7.90 16 22 C 0.07 0.70 9.21 59.85 0.55 1.25 16 23 C 0.06 0.64 4.46 -3.84 -0.02 0.63 16 24 C -0.07 -0.58 2.30 -91.69 -0.21 -0.79 16 25 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 26 C 0.49 4.30 7.34 36.01 0.26 4.56 16 27 O -0.51 -5.51 14.59 -18.75 -0.27 -5.78 16 28 O -0.51 -3.87 13.35 -39.24 -0.52 -4.39 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.64 5.75 -51.93 -0.30 0.34 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.37 5.66 -51.93 -0.29 0.07 16 35 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 37 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 38 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 39 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 0.70 7.97 -51.93 -0.41 0.28 16 42 H 0.08 0.72 4.94 -51.93 -0.26 0.47 16 43 H 0.10 1.19 7.88 -51.93 -0.41 0.78 16 44 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 45 H 0.05 0.48 5.74 -51.93 -0.30 0.18 16 46 H 0.41 1.44 9.10 45.56 0.41 1.85 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -34.80 364.72 -9.11 -43.90 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -6.12 Total: -1.78 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -3.36 Total: -4.14 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.34 Total: -50.04 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.80 Total: -10.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.80 -9.11 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589362360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.575 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds