Wall clock time and date at job start Tue Mar 31 2020 14:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.52517 * 2 1 4 4 C 1.53120 * 109.51993 * 239.87239 * 2 1 3 5 5 C 1.53039 * 109.27441 * 182.37963 * 4 2 1 6 6 N 1.46845 * 109.52506 * 59.17908 * 5 4 2 7 7 C 1.38586 * 111.00189 * 174.16050 * 6 5 4 8 8 N 1.31220 * 126.47226 * 236.21585 * 7 6 5 9 9 N 1.28522 * 109.85762 * 180.25702 * 8 7 6 10 10 C 1.30301 * 110.05317 * 359.74409 * 9 8 7 11 11 C 1.50705 * 126.34569 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47019 * 269.96031 * 11 10 9 13 13 C 1.50696 * 109.47023 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00239 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99676 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99607 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00280 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46720 * 90.00106 * 17 15 13 19 19 H 1.48498 * 109.46827 * 209.99760 * 17 15 13 20 20 H 1.48496 * 109.46818 * 330.00012 * 17 15 13 21 21 N 1.36446 * 126.47158 * 56.04334 * 7 6 5 22 22 C 1.46506 * 127.13855 * 0.02562 * 21 7 6 23 23 C 1.46847 * 111.19887 * 298.25975 * 6 5 4 24 24 C 1.53033 * 109.52364 * 61.74016 * 23 6 5 25 25 H 1.09002 * 109.53776 * 60.78437 * 24 23 6 26 26 C 1.50707 * 109.50026 * 180.88288 * 24 23 6 27 27 O 1.20831 * 119.99812 * 119.80590 * 26 24 23 28 28 O 1.34223 * 119.99945 * 299.79757 * 26 24 23 29 29 H 1.09002 * 109.47027 * 180.12501 * 1 2 3 30 30 H 1.09003 * 109.47472 * 300.12832 * 1 2 3 31 31 H 1.09001 * 109.46904 * 60.12911 * 1 2 3 32 32 H 1.08995 * 109.50827 * 62.44045 * 4 2 1 33 33 H 1.09005 * 109.53680 * 302.33615 * 4 2 1 34 34 H 1.09002 * 109.46154 * 299.16396 * 5 4 2 35 35 H 1.09005 * 109.45552 * 179.18730 * 5 4 2 36 36 H 1.09006 * 109.47108 * 29.95783 * 11 10 9 37 37 H 1.08997 * 109.47207 * 149.96327 * 11 10 9 38 38 H 1.08999 * 109.47059 * 300.00224 * 12 11 10 39 39 H 1.08997 * 109.46889 * 60.00102 * 12 11 10 40 40 H 0.97003 * 119.99793 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.46871 * 269.70572 * 22 21 7 42 42 H 1.08994 * 109.46947 * 29.70280 * 22 21 7 43 43 H 1.08997 * 109.47271 * 149.70797 * 22 21 7 44 44 H 1.09002 * 109.46623 * 181.75825 * 23 6 5 45 45 H 1.09006 * 109.45868 * 301.72121 * 23 6 5 46 46 H 0.96702 * 117.00202 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7244 -1.2482 5 6 3.5708 -0.7732 -1.2128 6 7 4.0115 -1.4767 -0.0015 7 6 5.3860 -1.6537 -0.0022 8 7 6.0257 -2.7944 0.1055 9 7 7.2939 -2.5885 0.0726 10 6 7.5365 -1.3155 -0.0624 11 6 8.8954 -0.6689 -0.1427 12 6 9.3684 -0.2995 1.2648 13 6 10.7270 0.3476 1.1845 14 1 11.2054 0.4817 0.2256 15 6 11.3591 0.7686 2.3352 16 7 12.5449 1.3329 2.2652 17 14 10.5319 0.5361 3.9939 18 1 10.9190 -0.7813 4.5596 19 1 10.9616 1.6169 4.9171 20 1 9.0576 0.5877 3.8232 21 7 6.3297 -0.6751 -0.1184 22 6 6.0982 0.7640 -0.2659 23 6 3.5721 -0.7736 1.2105 24 6 2.0430 -0.7249 1.2474 25 1 1.6462 -1.7399 1.2674 26 6 1.5929 0.0157 2.4804 27 8 0.9298 1.0201 2.3735 28 8 1.9285 -0.4406 3.6972 29 1 -0.3633 -1.0277 0.0022 30 1 -0.3634 0.5158 0.8888 31 1 -0.3633 0.5118 -0.8912 32 1 1.7152 -0.1885 -2.1395 33 1 1.6455 -1.7397 -1.2685 34 1 3.9666 0.2425 -1.2071 35 1 3.9377 -1.3010 -2.0931 36 1 9.6031 -1.3651 -0.5928 37 1 8.8337 0.2319 -0.7532 38 1 8.6607 0.3967 1.7149 39 1 9.4302 -1.2003 1.8753 40 1 12.9899 1.6287 3.0748 41 1 6.0313 1.0145 -1.3246 42 1 5.1667 1.0349 0.2311 43 1 6.9242 1.3131 0.1859 44 1 3.9399 -1.3016 2.0903 45 1 3.9679 0.2420 1.2048 46 1 1.6171 0.0683 4.4583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589362360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:01 Heat of formation + Delta-G solvation = -34.520332 kcal Electronic energy + Delta-G solvation = -28160.849602 eV Core-core repulsion = 24278.843757 eV Total energy + Delta-G solvation = -3882.005845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.13087 -41.85557 -39.97477 -37.36304 -36.46671 -36.17780 -35.12075 -33.67724 -32.62211 -30.92135 -29.30537 -28.31080 -27.29127 -25.81497 -23.81765 -23.40345 -23.07134 -22.10029 -21.59175 -20.73347 -19.15536 -19.04830 -18.57348 -17.66328 -17.52343 -17.02729 -16.75376 -16.33925 -16.06958 -15.78125 -15.33330 -15.18617 -14.99883 -14.89032 -14.66326 -14.39727 -14.29054 -13.82885 -13.70027 -13.45088 -13.16888 -13.01358 -12.95476 -12.69565 -12.59568 -12.47686 -12.27102 -12.10584 -11.99214 -11.84897 -11.81730 -11.57281 -11.48721 -11.40307 -11.21514 -11.14388 -10.80068 -10.12840 -9.95205 -8.32047 -6.36050 0.60960 1.04662 1.31337 1.32054 1.35001 1.43357 1.73067 1.94130 2.31714 2.32122 3.03485 3.33956 3.38977 3.43862 3.54202 3.74020 3.86226 3.89398 3.98571 4.13625 4.23065 4.27230 4.34271 4.38774 4.47423 4.49520 4.55189 4.61015 4.66242 4.71389 4.76720 4.80124 4.83505 4.96419 5.06374 5.12177 5.23732 5.30630 5.35669 5.39399 5.41103 5.55510 5.58880 5.63937 6.11314 6.22506 6.71460 6.92329 7.28715 7.71281 8.83949 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.003385 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.058437 B = 8270.920833 C = 9282.223822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.075 4.075 3 H 0.077 0.923 4 C -0.099 4.099 5 C 0.043 3.957 6 N -0.436 5.436 7 C 0.339 3.661 8 N -0.305 5.305 9 N -0.331 5.331 10 C 0.204 3.796 11 C -0.012 4.012 12 C 0.005 3.995 13 C -0.527 4.527 14 H 0.048 0.952 15 C 0.015 3.985 16 N -0.943 5.943 17 Si 0.939 3.061 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.254 1.254 21 N -0.495 5.495 22 C 0.055 3.945 23 C 0.066 3.934 24 C -0.066 4.066 25 H 0.132 0.868 26 C 0.491 3.509 27 O -0.529 6.529 28 O -0.516 6.516 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.021 0.979 39 H 0.008 0.992 40 H 0.267 0.733 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.777 0.846 -4.895 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.093 4.093 3 H 0.095 0.905 4 C -0.136 4.136 5 C -0.083 4.083 6 N -0.161 5.161 7 C -0.017 4.017 8 N -0.146 5.146 9 N -0.170 5.170 10 C -0.065 4.065 11 C -0.052 4.052 12 C -0.034 4.034 13 C -0.565 4.565 14 H 0.067 0.933 15 C -0.183 4.183 16 N -0.584 5.584 17 Si 0.764 3.236 18 H -0.200 1.200 19 H -0.205 1.205 20 H -0.178 1.178 21 N -0.191 5.191 22 C -0.086 4.086 23 C -0.061 4.061 24 C -0.086 4.086 25 H 0.150 0.850 26 C 0.333 3.667 27 O -0.418 6.418 28 O -0.329 6.329 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.039 0.961 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -28.711 -0.961 -5.017 29.162 hybrid contribution 0.375 2.257 1.402 2.683 sum -28.336 1.295 -3.615 28.595 Atomic orbital electron populations 1.21943 0.93340 1.02532 1.03119 1.21113 0.97358 0.99155 0.91714 0.90476 1.21662 0.91316 1.02629 0.98029 1.22600 0.98302 0.97306 0.90121 1.59015 1.00859 1.51471 1.04790 1.23010 0.88282 0.85304 1.05119 1.74337 0.98863 1.21464 1.19910 1.74138 1.07746 1.14366 1.20793 1.25250 0.89978 0.89865 1.01423 1.19986 0.85659 0.99962 0.99588 1.19377 0.95119 0.95651 0.93245 1.21303 1.02206 1.38621 0.94334 0.93338 1.25803 0.95168 0.94335 1.02963 1.70026 1.15895 1.42357 1.30083 0.85826 0.79974 0.78133 0.79683 1.19964 1.20505 1.17768 1.47392 1.06661 1.10568 1.54524 1.22655 1.05207 0.75008 1.05765 1.22139 0.94346 0.97568 0.92040 1.21140 0.94688 1.02500 0.90249 0.85023 1.23331 0.75825 0.82333 0.85188 1.90695 1.37641 1.25951 1.87526 1.84546 1.73066 1.58020 1.17319 0.91890 0.92423 0.91061 0.87561 0.89776 0.92178 0.89798 0.89366 0.88486 0.96108 0.97357 0.92351 0.87160 0.87962 0.88336 0.89991 0.92752 0.70958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.91 71.98 0.64 -1.00 16 2 C -0.07 -0.84 1.92 -10.71 -0.02 -0.86 16 3 H 0.08 0.94 8.04 -2.39 -0.02 0.92 16 4 C -0.10 -0.92 5.38 30.65 0.16 -0.75 16 5 C 0.04 0.61 5.13 86.33 0.44 1.06 16 6 N -0.44 -9.17 4.70 -706.14 -3.32 -12.49 16 7 C 0.34 9.93 6.65 260.11 1.73 11.66 16 8 N -0.30 -11.55 12.23 -58.00 -0.71 -12.26 16 9 N -0.33 -13.53 12.18 -49.53 -0.60 -14.13 16 10 C 0.20 7.31 7.32 137.64 1.01 8.32 16 11 C -0.01 -0.45 5.36 29.85 0.16 -0.29 16 12 C 0.00 0.21 4.02 29.85 0.12 0.33 16 13 C -0.53 -28.83 9.66 25.60 0.25 -28.59 16 14 H 0.05 2.85 7.99 -2.91 -0.02 2.83 16 15 C 0.02 0.86 5.47 84.65 0.46 1.33 16 16 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 17 Si 0.94 43.86 27.47 68.60 1.88 45.74 16 18 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 21 N -0.49 -13.91 3.21 -538.17 -1.73 -15.64 16 22 C 0.06 1.02 9.21 127.77 1.18 2.19 16 23 C 0.07 1.21 4.46 86.32 0.39 1.59 16 24 C -0.07 -0.92 2.30 -11.49 -0.03 -0.95 16 25 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 26 C 0.49 7.72 7.34 71.24 0.52 8.25 16 27 O -0.53 -10.53 14.59 21.95 0.32 -10.21 16 28 O -0.52 -6.87 13.35 -51.34 -0.69 -7.56 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.86 5.75 -2.39 -0.01 0.85 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.06 0.71 5.66 -2.39 -0.01 0.69 16 35 H 0.08 1.32 8.10 -2.38 -0.02 1.30 16 36 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 37 H 0.10 3.15 7.93 -2.39 -0.02 3.13 16 38 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 39 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.11 1.45 7.97 -2.39 -0.02 1.43 16 42 H 0.10 1.45 4.94 -2.39 -0.01 1.44 16 43 H 0.10 1.99 7.88 -2.39 -0.02 1.97 16 44 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 45 H 0.05 0.92 5.74 -2.38 -0.01 0.90 16 46 H 0.43 2.23 9.10 -74.06 -0.67 1.55 16 Total: -1.00 -76.42 364.72 2.75 -73.67 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.28 Total: 7.63 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 7.01 Total: 2.29 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -6.06 Total: -111.56 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.37 Total: -17.77 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Total: -76.42 2.75 -73.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589362360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.148 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds