Wall clock time and date at job start Tue Mar 31 2020 14:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.52289 * 2 1 4 4 C 1.53116 * 109.52425 * 239.87202 * 2 1 3 5 5 C 1.53031 * 109.27956 * 297.74723 * 4 2 1 6 6 N 1.46846 * 109.52376 * 300.81992 * 5 4 2 7 7 C 1.38582 * 111.00098 * 185.83559 * 6 5 4 8 8 N 1.31219 * 126.47501 * 272.16622 * 7 6 5 9 9 N 1.28527 * 109.86071 * 179.97438 * 8 7 6 10 10 C 1.30293 * 110.05332 * 0.02562 * 9 8 7 11 11 C 1.50705 * 126.34886 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47000 * 89.96946 * 11 10 9 13 13 C 1.50697 * 109.47406 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99610 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00615 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99928 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00324 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46705 * 60.00467 * 17 15 13 19 19 H 1.48500 * 109.47133 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47488 * 300.00233 * 17 15 13 21 21 N 1.36454 * 126.47212 * 91.85504 * 7 6 5 22 22 C 1.46500 * 127.13485 * 0.03802 * 21 7 6 23 23 C 1.46856 * 111.19816 * 61.74406 * 6 5 4 24 24 C 1.53041 * 109.51704 * 298.25674 * 23 6 5 25 25 H 1.08993 * 109.50343 * 299.23425 * 24 23 6 26 26 C 1.50709 * 109.50057 * 179.11967 * 24 23 6 27 27 O 1.20822 * 120.00106 * 240.00237 * 26 24 23 28 28 O 1.34223 * 119.99806 * 59.99643 * 26 24 23 29 29 H 1.09000 * 109.46658 * 180.12750 * 1 2 3 30 30 H 1.08996 * 109.47024 * 300.12402 * 1 2 3 31 31 H 1.09001 * 109.46888 * 60.13107 * 1 2 3 32 32 H 1.09000 * 109.50306 * 177.80633 * 4 2 1 33 33 H 1.09003 * 109.53371 * 57.71173 * 4 2 1 34 34 H 1.08998 * 109.46563 * 180.80222 * 5 4 2 35 35 H 1.08998 * 109.45510 * 60.82894 * 5 4 2 36 36 H 1.08992 * 109.47166 * 209.97230 * 11 10 9 37 37 H 1.09000 * 109.47097 * 329.97585 * 11 10 9 38 38 H 1.09004 * 109.47591 * 300.00584 * 12 11 10 39 39 H 1.09006 * 109.47075 * 60.00258 * 12 11 10 40 40 H 0.96994 * 120.00296 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.47110 * 95.46957 * 22 21 7 42 42 H 1.09000 * 109.47261 * 215.46810 * 22 21 7 43 43 H 1.08996 * 109.47310 * 335.47100 * 22 21 7 44 44 H 1.08994 * 109.46069 * 58.26739 * 23 6 5 45 45 H 1.08999 * 109.46330 * 178.24322 * 23 6 5 46 46 H 0.96703 * 116.99865 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0418 -0.7243 -1.2482 5 6 1.5768 -2.1819 -1.2128 6 7 2.0927 -2.8323 -0.0015 7 6 1.8001 -4.1869 -0.0022 8 7 0.7063 -4.7489 0.4556 9 7 0.7697 -6.0225 0.2950 10 6 1.8985 -6.3460 -0.2697 11 6 2.3519 -7.7382 -0.6268 12 6 1.8931 -8.0754 -2.0469 13 6 2.3460 -9.4677 -2.4038 14 1 2.9048 -10.0536 -1.6890 15 6 2.0470 -9.9936 -3.6427 16 7 1.3669 -9.2799 -4.5134 17 14 2.6090 -11.7192 -4.0854 18 1 2.0190 -12.6919 -3.1309 19 1 2.1636 -12.0465 -5.4637 20 1 4.0904 -11.7911 -4.0132 21 7 2.5925 -5.1876 -0.4844 22 6 3.9144 -5.0498 -1.1007 23 6 1.5767 -2.1832 1.2106 24 6 2.0418 -0.7256 1.2474 25 1 3.1310 -0.6916 1.2671 26 6 1.4942 -0.0539 2.4804 27 8 0.7720 0.9088 2.3736 28 8 1.8089 -0.5251 3.6972 29 1 -0.3632 -1.0277 0.0023 30 1 -0.3633 0.5157 0.8888 31 1 -0.3633 0.5118 -0.8912 32 1 3.1310 -0.6903 -1.2678 33 1 1.6464 -0.2377 -2.1398 34 1 1.9515 -2.7041 -2.0931 35 1 0.4873 -2.2153 -1.2070 36 1 3.4393 -7.7908 -0.5742 37 1 1.9192 -8.4522 0.0739 38 1 0.8056 -8.0227 -2.0996 39 1 2.3258 -7.3614 -2.7477 40 1 1.1569 -9.6497 -5.3851 41 1 4.6852 -5.2085 -0.3465 42 1 4.0245 -5.7894 -1.8938 43 1 4.0172 -4.0491 -1.5203 44 1 0.4873 -2.2167 1.2048 45 1 1.9515 -2.7064 2.0903 46 1 1.4340 -0.0609 4.4582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589362361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:05 Heat of formation + Delta-G solvation = -14.709793 kcal Electronic energy + Delta-G solvation = -27888.517821 eV Core-core repulsion = 24007.371025 eV Total energy + Delta-G solvation = -3881.146796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.66813 -41.15471 -39.13316 -36.58565 -34.87078 -34.85174 -33.66236 -31.79993 -31.65715 -28.97700 -27.77345 -27.19505 -25.27572 -24.88161 -24.23149 -22.21469 -21.87608 -20.78241 -20.03051 -18.82871 -18.39107 -17.56100 -16.64375 -16.60251 -16.16206 -16.00766 -15.82976 -15.33553 -14.83598 -14.52812 -14.32024 -14.17739 -13.73213 -13.53238 -13.19362 -13.10200 -12.88402 -12.56286 -12.37235 -12.23795 -12.08006 -11.89614 -11.60467 -11.39389 -11.25534 -11.19648 -11.08306 -10.99058 -10.82252 -10.73088 -10.38653 -10.35236 -9.99911 -9.90823 -9.76778 -9.27678 -9.04540 -8.43570 -8.26604 -6.08140 -4.12557 1.79501 2.04085 2.41533 2.72638 3.20826 3.29119 3.34343 3.36464 3.66684 4.14842 4.32842 4.38871 4.52007 4.68472 4.86376 4.88192 4.99626 5.01303 5.06920 5.13279 5.26024 5.27075 5.28084 5.32378 5.43128 5.50683 5.51325 5.56966 5.63325 5.74056 5.79996 5.83000 5.93634 6.06556 6.24316 6.30205 6.36610 6.42453 6.52716 6.64069 6.89186 7.38825 7.51315 7.55859 7.65355 7.88913 8.26360 8.93362 9.12187 9.52291 11.02927 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.002563 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.443164 B =10921.169154 C =11284.200787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 H 0.083 0.917 4 C -0.109 4.109 5 C 0.054 3.946 6 N -0.454 5.454 7 C 0.321 3.679 8 N -0.314 5.314 9 N -0.296 5.296 10 C 0.218 3.782 11 C -0.032 4.032 12 C 0.032 3.968 13 C -0.525 4.525 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.469 5.469 22 C 0.080 3.920 23 C 0.081 3.919 24 C -0.074 4.074 25 H 0.119 0.881 26 C 0.488 3.512 27 O -0.506 6.506 28 O -0.513 6.513 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.025 0.975 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 20.671 10.226 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.095 4.095 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.073 4.073 6 N -0.179 5.179 7 C -0.036 4.036 8 N -0.159 5.159 9 N -0.136 5.136 10 C -0.050 4.050 11 C -0.072 4.072 12 C -0.006 4.006 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.162 5.162 22 C -0.063 4.063 23 C -0.046 4.046 24 C -0.093 4.093 25 H 0.137 0.863 26 C 0.330 3.670 27 O -0.394 6.394 28 O -0.325 6.325 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.110 0.890 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.763 20.647 10.287 23.555 hybrid contribution 0.609 -0.490 -0.496 0.926 sum 5.372 20.157 9.791 23.044 Atomic orbital electron populations 1.22279 0.94271 1.02472 1.03795 1.21059 0.97140 0.99261 0.92056 0.89820 1.21654 1.01840 0.93527 0.97625 1.22330 0.99226 0.94734 0.90997 1.58454 1.59142 0.96144 1.04130 1.22046 0.89436 0.88549 1.03542 1.74493 1.17216 1.02102 1.22056 1.74041 1.16476 1.04903 1.18179 1.25650 0.90002 0.90715 0.98590 1.20467 1.00276 0.84153 1.02306 1.19064 0.97541 0.96610 0.87367 1.21101 1.35808 0.99664 0.99783 0.92303 1.25010 0.94994 0.97785 0.96436 1.69959 1.39037 1.37223 1.06902 0.86609 0.79016 0.84568 0.77538 1.20060 1.21281 1.20187 1.46143 1.17255 1.06394 1.46361 1.22026 0.80471 1.04686 0.99127 1.21902 0.99775 0.91098 0.91853 1.21138 1.03160 0.95305 0.89732 0.86313 1.23287 0.77345 0.81705 0.84664 1.90655 1.34660 1.27144 1.86978 1.84566 1.70932 1.60073 1.16917 0.92518 0.89877 0.92341 0.90487 0.89954 0.90092 0.92567 0.91077 0.89187 0.95642 0.96807 0.92781 0.90417 0.88597 0.89296 0.91622 0.89006 0.73064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 8.26 37.16 0.31 -1.32 16 2 C -0.08 -0.62 2.42 -90.50 -0.22 -0.84 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.11 -0.83 5.60 -26.66 -0.15 -0.98 16 5 C 0.05 0.58 5.15 -3.84 -0.02 0.56 16 6 N -0.45 -5.50 4.64 -174.55 -0.81 -6.31 16 7 C 0.32 5.19 6.71 -318.87 -2.14 3.05 16 8 N -0.31 -6.11 11.70 30.32 0.35 -5.76 16 9 N -0.30 -6.35 12.18 32.99 0.40 -5.95 16 10 C 0.22 4.25 7.32 -154.02 -1.13 3.12 16 11 C -0.03 -0.64 5.47 -27.88 -0.15 -0.79 16 12 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 13 C -0.53 -14.13 9.11 -34.44 -0.31 -14.45 16 14 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 17 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 N -0.47 -7.64 3.21 -121.46 -0.39 -8.03 16 22 C 0.08 0.96 10.88 59.85 0.65 1.61 16 23 C 0.08 0.90 4.06 -3.83 -0.02 0.88 16 24 C -0.07 -0.63 2.58 -91.69 -0.24 -0.86 16 25 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 26 C 0.49 4.41 7.33 36.01 0.26 4.68 16 27 O -0.51 -5.66 14.29 -18.75 -0.27 -5.93 16 28 O -0.51 -3.73 13.34 -39.24 -0.52 -4.26 16 29 H 0.06 0.60 4.92 -51.93 -0.26 0.35 16 30 H 0.08 0.90 5.35 -51.93 -0.28 0.62 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.06 0.68 6.51 -51.93 -0.34 0.35 16 36 H 0.07 1.25 7.98 -51.93 -0.41 0.84 16 37 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16 43 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 44 H 0.07 0.82 6.42 -51.93 -0.33 0.49 16 45 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 46 H 0.41 1.27 9.10 45.56 0.41 1.69 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -34.23 370.78 -9.55 -43.78 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.23 Total: -0.47 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -3.39 Total: -3.12 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.29 Total: -51.51 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.79 Total: -10.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.23 -9.55 -43.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589362361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.066 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds