Wall clock time and date at job start Tue Mar 31 2020 14:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.51637 * 2 1 4 4 C 1.53118 * 109.52008 * 120.12619 * 2 1 3 5 5 C 1.53044 * 109.27363 * 177.56389 * 4 2 1 6 6 N 1.46848 * 109.51867 * 300.81733 * 5 4 2 7 7 C 1.38583 * 110.99804 * 185.84054 * 6 5 4 8 8 N 1.31217 * 126.47469 * 236.22264 * 7 6 5 9 9 N 1.28526 * 109.85875 * 180.25965 * 8 7 6 10 10 C 1.30290 * 110.05818 * 359.74001 * 9 8 7 11 11 C 1.50704 * 126.35382 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.46829 * 269.96085 * 11 10 9 13 13 C 1.50701 * 109.46834 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00220 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99841 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00356 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00022 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47232 * 59.99864 * 17 15 13 19 19 H 1.48504 * 109.47401 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47066 * 300.00006 * 17 15 13 21 21 N 1.36451 * 126.47281 * 56.04619 * 7 6 5 22 22 C 1.46506 * 127.13701 * 0.02562 * 21 7 6 23 23 C 1.46850 * 111.19988 * 61.74835 * 6 5 4 24 24 C 1.53038 * 109.52109 * 298.25362 * 23 6 5 25 25 H 1.08999 * 109.50356 * 299.24362 * 24 23 6 26 26 C 1.50696 * 109.50324 * 179.11666 * 24 23 6 27 27 O 1.20818 * 120.00081 * 240.19469 * 26 24 23 28 28 O 1.34232 * 119.99885 * 60.20086 * 26 24 23 29 29 H 1.09001 * 109.47011 * 299.86921 * 1 2 3 30 30 H 1.08996 * 109.47461 * 59.87476 * 1 2 3 31 31 H 1.09002 * 109.46960 * 179.87348 * 1 2 3 32 32 H 1.08996 * 109.50621 * 57.62267 * 4 2 1 33 33 H 1.08999 * 109.53860 * 297.51532 * 4 2 1 34 34 H 1.08999 * 109.46170 * 180.80883 * 5 4 2 35 35 H 1.08997 * 109.45500 * 60.82847 * 5 4 2 36 36 H 1.09003 * 109.46594 * 29.95685 * 11 10 9 37 37 H 1.08998 * 109.47278 * 149.95640 * 11 10 9 38 38 H 1.09003 * 109.47205 * 299.99225 * 12 11 10 39 39 H 1.08998 * 109.47554 * 59.99723 * 12 11 10 40 40 H 0.96992 * 120.00183 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47060 * 269.70887 * 22 21 7 42 42 H 1.09004 * 109.47073 * 29.70376 * 22 21 7 43 43 H 1.09000 * 109.47212 * 149.70458 * 22 21 7 44 44 H 1.09000 * 109.46480 * 58.26833 * 23 6 5 45 45 H 1.09001 * 109.46390 * 178.23851 * 23 6 5 46 46 H 0.96703 * 116.99892 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7243 1.2482 5 6 3.5709 -0.7744 1.2121 6 7 4.0102 -1.4788 0.0008 7 6 5.3846 -1.6569 0.0009 8 7 6.2225 -1.2612 -0.9281 9 7 7.4208 -1.5971 -0.6071 10 6 7.4193 -2.2169 0.5389 11 6 8.6236 -2.7682 1.2579 12 6 8.8607 -4.2150 0.8203 13 6 10.0653 -4.7661 1.5388 14 1 10.6077 -4.1463 2.2373 15 6 10.4749 -6.0616 1.3043 16 7 9.8140 -6.8165 0.4541 17 14 11.9676 -6.7450 2.1955 18 1 11.7314 -6.7030 3.6610 19 1 12.1979 -8.1492 1.7706 20 1 13.1607 -5.9257 1.8628 21 7 6.1225 -2.2740 0.9687 22 6 5.6272 -2.8782 2.2081 23 6 3.5709 -0.7757 -1.2112 24 6 2.0417 -0.7257 -1.2474 25 1 1.6447 -1.7406 -1.2664 26 6 1.5916 0.0148 -2.4804 27 8 0.9295 1.0197 -2.3735 28 8 1.9262 -0.4423 -3.6973 29 1 -0.3633 0.5118 0.8912 30 1 -0.3634 0.5157 -0.8888 31 1 -0.3633 -1.0277 -0.0023 32 1 1.6447 -1.7393 1.2684 33 1 1.7162 -0.1884 2.1398 34 1 3.9379 -1.3021 2.0924 35 1 3.9673 0.2410 1.2057 36 1 9.4992 -2.1666 1.0140 37 1 8.4500 -2.7377 2.3336 38 1 7.9850 -4.8165 1.0643 39 1 9.0342 -4.2454 -0.2553 40 1 10.1020 -7.7280 0.2894 41 1 5.6254 -2.1306 3.0013 42 1 4.6128 -3.2459 2.0530 43 1 6.2749 -3.7077 2.4920 44 1 3.9674 0.2395 -1.2061 45 1 3.9378 -1.3044 -2.0910 46 1 1.6148 0.0667 -4.4583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589362362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:08 Heat of formation + Delta-G solvation = -18.028514 kcal Electronic energy + Delta-G solvation = -27711.288323 eV Core-core repulsion = 23829.997617 eV Total energy + Delta-G solvation = -3881.290707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.68056 -41.05125 -39.05745 -36.58255 -35.10739 -34.90794 -33.71257 -31.83036 -31.66600 -29.43340 -27.85571 -27.15164 -25.35135 -24.97899 -23.09294 -22.34560 -21.76670 -20.81729 -20.11057 -19.84649 -18.36039 -17.64241 -16.65283 -16.48836 -16.14976 -15.99177 -15.78799 -15.03674 -14.83582 -14.60839 -14.50488 -14.21548 -13.64348 -13.50770 -13.26742 -13.06303 -13.01390 -12.67719 -12.39336 -12.32606 -12.26285 -11.92574 -11.71724 -11.35760 -11.23430 -11.18065 -11.12070 -10.98636 -10.88385 -10.74650 -10.48041 -10.38311 -10.07090 -9.90825 -9.75578 -9.43325 -9.24709 -8.41970 -7.97108 -6.06230 -4.10826 1.81167 2.08085 2.39848 2.73894 3.23122 3.29884 3.35239 3.37129 3.61675 4.09527 4.26858 4.37218 4.40069 4.52818 4.76611 4.84669 4.96211 5.00320 5.04105 5.08333 5.12682 5.15295 5.20518 5.29530 5.35032 5.37542 5.48736 5.51450 5.57433 5.60001 5.68601 5.72229 5.92130 5.94657 6.14327 6.25943 6.30503 6.43554 6.56583 6.65235 6.88060 7.35612 7.54083 7.58024 7.68073 7.90969 8.28149 8.95224 9.17278 9.53858 11.04758 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025822 B = 0.002518 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.078233 B =11115.525402 C =11560.296379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.079 4.079 3 H 0.081 0.919 4 C -0.109 4.109 5 C 0.044 3.956 6 N -0.444 5.444 7 C 0.334 3.666 8 N -0.322 5.322 9 N -0.294 5.294 10 C 0.214 3.786 11 C -0.031 4.031 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.275 1.275 21 N -0.482 5.482 22 C 0.074 3.926 23 C 0.084 3.916 24 C -0.076 4.076 25 H 0.121 0.879 26 C 0.490 3.510 27 O -0.510 6.510 28 O -0.510 6.510 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.014 0.986 39 H 0.026 0.974 40 H 0.263 0.737 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.106 0.894 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.607 12.591 1.680 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.098 4.098 3 H 0.099 0.901 4 C -0.147 4.147 5 C -0.083 4.083 6 N -0.168 5.168 7 C -0.023 4.023 8 N -0.167 5.167 9 N -0.132 5.132 10 C -0.053 4.053 11 C -0.071 4.071 12 C -0.006 4.006 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 N -0.177 5.177 22 C -0.069 4.069 23 C -0.043 4.043 24 C -0.095 4.095 25 H 0.139 0.861 26 C 0.332 3.668 27 O -0.398 6.398 28 O -0.322 6.322 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.124 0.876 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -20.388 12.637 0.704 23.997 hybrid contribution 0.325 -0.200 1.102 1.166 sum -20.063 12.437 1.806 23.674 Atomic orbital electron populations 1.22004 0.93923 1.02024 1.03398 1.21119 0.96914 0.99602 0.92138 0.90108 1.21682 0.93257 1.02041 0.97673 1.22472 0.96721 0.97485 0.91663 1.58500 1.04387 1.49281 1.04606 1.22301 0.89823 1.00260 0.89888 1.74504 0.96063 1.22577 1.23530 1.73994 1.12664 1.15703 1.10821 1.25582 0.85460 1.00106 0.94193 1.20444 0.89185 1.00378 0.97053 1.19069 0.96937 0.86860 0.97764 1.21100 1.12434 0.97692 1.25178 0.92348 1.25013 0.96957 0.97064 0.95195 1.69960 1.39971 1.08511 1.34579 0.86618 0.83202 0.78030 0.79913 1.20218 1.21276 1.20076 1.46041 1.07554 1.45219 1.18879 1.22130 1.01993 0.99545 0.83273 1.21861 0.91422 0.98681 0.92348 1.21191 0.97050 1.01555 0.89749 0.86087 1.23210 0.76148 0.82734 0.84735 1.90679 1.36820 1.25122 1.87201 1.84585 1.73220 1.57533 1.16816 0.92289 0.90639 0.92751 0.90170 0.89925 0.89562 0.93262 0.89269 0.91224 0.96747 0.95589 0.92775 0.90736 0.89202 0.87993 0.92405 0.87580 0.73010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.91 37.16 0.33 -0.79 16 2 C -0.08 -0.61 1.92 -90.49 -0.17 -0.79 16 3 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 4 C -0.11 -0.73 5.38 -26.65 -0.14 -0.88 16 5 C 0.04 0.40 5.28 -3.83 -0.02 0.38 16 6 N -0.44 -5.42 4.70 -174.54 -0.82 -6.24 16 7 C 0.33 5.45 7.21 -318.87 -2.30 3.15 16 8 N -0.32 -6.33 11.25 30.31 0.34 -5.99 16 9 N -0.29 -6.34 12.18 32.99 0.40 -5.94 16 10 C 0.21 4.20 7.32 -154.02 -1.13 3.07 16 11 C -0.03 -0.61 5.36 -27.88 -0.15 -0.76 16 12 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16 13 C -0.53 -14.21 9.11 -34.44 -0.31 -14.53 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 17 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 N -0.48 -7.82 3.21 -121.45 -0.39 -8.21 16 22 C 0.07 0.85 9.16 59.85 0.55 1.40 16 23 C 0.08 0.96 4.09 -3.83 -0.02 0.94 16 24 C -0.08 -0.67 2.30 -91.69 -0.21 -0.88 16 25 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 26 C 0.49 4.59 7.34 36.00 0.26 4.85 16 27 O -0.51 -5.77 14.59 -18.74 -0.27 -6.04 16 28 O -0.51 -4.04 13.35 -39.26 -0.52 -4.56 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.67 5.75 -51.93 -0.30 0.37 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.72 5.23 -51.93 -0.27 0.45 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 41 H 0.07 0.66 7.76 -51.93 -0.40 0.26 16 42 H 0.09 0.88 7.64 -51.93 -0.40 0.48 16 43 H 0.10 1.28 7.88 -51.93 -0.41 0.87 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.11 1.38 7.92 -51.93 -0.41 0.97 16 46 H 0.41 1.49 9.10 45.56 0.41 1.91 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -34.97 371.95 -9.86 -44.84 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.37 Total: -1.24 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -3.55 Total: -2.60 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.27 Total: -51.99 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.80 Total: -10.61 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.97 -9.86 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589362362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.809 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds