Wall clock time and date at job start Tue Mar 31 2020 14:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.51637 * 2 1 4 4 C 1.53118 * 109.52008 * 120.12619 * 2 1 3 5 5 C 1.53044 * 109.27363 * 177.56389 * 4 2 1 6 6 N 1.46848 * 109.51867 * 300.81733 * 5 4 2 7 7 C 1.38583 * 110.99804 * 185.84054 * 6 5 4 8 8 N 1.31217 * 126.47469 * 236.22264 * 7 6 5 9 9 N 1.28526 * 109.85875 * 180.25965 * 8 7 6 10 10 C 1.30290 * 110.05818 * 359.74001 * 9 8 7 11 11 C 1.50704 * 126.35382 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.46829 * 269.96085 * 11 10 9 13 13 C 1.50701 * 109.46834 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00220 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99841 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00356 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00022 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47232 * 59.99864 * 17 15 13 19 19 H 1.48504 * 109.47401 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47066 * 300.00006 * 17 15 13 21 21 N 1.36451 * 126.47281 * 56.04619 * 7 6 5 22 22 C 1.46506 * 127.13701 * 0.02562 * 21 7 6 23 23 C 1.46850 * 111.19988 * 61.74835 * 6 5 4 24 24 C 1.53038 * 109.52109 * 298.25362 * 23 6 5 25 25 H 1.08999 * 109.50356 * 299.24362 * 24 23 6 26 26 C 1.50696 * 109.50324 * 179.11666 * 24 23 6 27 27 O 1.20818 * 120.00081 * 240.19469 * 26 24 23 28 28 O 1.34232 * 119.99885 * 60.20086 * 26 24 23 29 29 H 1.09001 * 109.47011 * 299.86921 * 1 2 3 30 30 H 1.08996 * 109.47461 * 59.87476 * 1 2 3 31 31 H 1.09002 * 109.46960 * 179.87348 * 1 2 3 32 32 H 1.08996 * 109.50621 * 57.62267 * 4 2 1 33 33 H 1.08999 * 109.53860 * 297.51532 * 4 2 1 34 34 H 1.08999 * 109.46170 * 180.80883 * 5 4 2 35 35 H 1.08997 * 109.45500 * 60.82847 * 5 4 2 36 36 H 1.09003 * 109.46594 * 29.95685 * 11 10 9 37 37 H 1.08998 * 109.47278 * 149.95640 * 11 10 9 38 38 H 1.09003 * 109.47205 * 299.99225 * 12 11 10 39 39 H 1.08998 * 109.47554 * 59.99723 * 12 11 10 40 40 H 0.96992 * 120.00183 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47060 * 269.70887 * 22 21 7 42 42 H 1.09004 * 109.47073 * 29.70376 * 22 21 7 43 43 H 1.09000 * 109.47212 * 149.70458 * 22 21 7 44 44 H 1.09000 * 109.46480 * 58.26833 * 23 6 5 45 45 H 1.09001 * 109.46390 * 178.23851 * 23 6 5 46 46 H 0.96703 * 116.99892 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7243 1.2482 5 6 3.5709 -0.7744 1.2121 6 7 4.0102 -1.4788 0.0008 7 6 5.3846 -1.6569 0.0009 8 7 6.2225 -1.2612 -0.9281 9 7 7.4208 -1.5971 -0.6071 10 6 7.4193 -2.2169 0.5389 11 6 8.6236 -2.7682 1.2579 12 6 8.8607 -4.2150 0.8203 13 6 10.0653 -4.7661 1.5388 14 1 10.6077 -4.1463 2.2373 15 6 10.4749 -6.0616 1.3043 16 7 9.8140 -6.8165 0.4541 17 14 11.9676 -6.7450 2.1955 18 1 11.7314 -6.7030 3.6610 19 1 12.1979 -8.1492 1.7706 20 1 13.1607 -5.9257 1.8628 21 7 6.1225 -2.2740 0.9687 22 6 5.6272 -2.8782 2.2081 23 6 3.5709 -0.7757 -1.2112 24 6 2.0417 -0.7257 -1.2474 25 1 1.6447 -1.7406 -1.2664 26 6 1.5916 0.0148 -2.4804 27 8 0.9295 1.0197 -2.3735 28 8 1.9262 -0.4423 -3.6973 29 1 -0.3633 0.5118 0.8912 30 1 -0.3634 0.5157 -0.8888 31 1 -0.3633 -1.0277 -0.0023 32 1 1.6447 -1.7393 1.2684 33 1 1.7162 -0.1884 2.1398 34 1 3.9379 -1.3021 2.0924 35 1 3.9673 0.2410 1.2057 36 1 9.4992 -2.1666 1.0140 37 1 8.4500 -2.7377 2.3336 38 1 7.9850 -4.8165 1.0643 39 1 9.0342 -4.2454 -0.2553 40 1 10.1020 -7.7280 0.2894 41 1 5.6254 -2.1306 3.0013 42 1 4.6128 -3.2459 2.0530 43 1 6.2749 -3.7077 2.4920 44 1 3.9674 0.2395 -1.2061 45 1 3.9378 -1.3044 -2.0910 46 1 1.6148 0.0667 -4.4583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589362362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:07 Heat of formation + Delta-G solvation = -39.639857 kcal Electronic energy + Delta-G solvation = -27712.225461 eV Core-core repulsion = 23829.997617 eV Total energy + Delta-G solvation = -3882.227845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.03551 -41.81975 -39.90504 -37.32453 -36.40983 -36.09732 -35.29337 -33.49476 -32.55454 -30.65595 -29.09939 -28.15887 -27.07347 -25.92626 -23.90358 -23.73740 -22.96952 -21.93811 -21.43787 -20.72017 -19.11135 -18.69924 -18.44560 -17.55532 -17.40235 -16.94983 -16.85954 -16.48057 -15.90378 -15.72793 -15.36791 -15.02550 -14.96075 -14.81285 -14.36898 -14.29040 -14.11869 -13.87824 -13.49919 -13.32170 -13.05702 -12.92202 -12.82229 -12.67829 -12.60027 -12.47338 -12.43739 -12.05777 -11.95180 -11.90763 -11.75651 -11.60279 -11.41114 -11.28857 -11.20263 -11.10200 -10.75306 -10.54875 -9.30558 -8.18619 -6.31181 0.76761 0.99851 1.28714 1.44638 1.47858 1.55325 1.79566 2.04681 2.43403 2.58312 3.15596 3.37833 3.49254 3.51252 3.72042 3.76617 3.84796 3.98565 4.07875 4.22333 4.30826 4.31994 4.37769 4.42815 4.53584 4.57591 4.64857 4.67868 4.73746 4.75079 4.80163 4.87501 4.89528 5.04931 5.06634 5.14269 5.33282 5.37288 5.45781 5.49622 5.58087 5.62966 5.66049 5.80321 6.12537 6.18866 6.85056 6.95553 7.38985 7.74795 8.93226 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025822 B = 0.002518 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.078233 B =11115.525402 C =11560.296379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 H 0.069 0.931 4 C -0.099 4.099 5 C 0.040 3.960 6 N -0.438 5.438 7 C 0.351 3.649 8 N -0.362 5.362 9 N -0.333 5.333 10 C 0.198 3.802 11 C -0.013 4.013 12 C 0.043 3.957 13 C -0.540 4.540 14 H 0.073 0.927 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.288 1.288 20 H -0.269 1.269 21 N -0.478 5.478 22 C 0.064 3.936 23 C 0.089 3.911 24 C -0.069 4.069 25 H 0.134 0.866 26 C 0.493 3.507 27 O -0.531 6.531 28 O -0.514 6.514 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.099 0.901 38 H -0.004 1.004 39 H -0.020 1.020 40 H 0.263 0.737 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.084 0.916 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.874 12.800 4.281 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.096 4.096 3 H 0.087 0.913 4 C -0.136 4.136 5 C -0.086 4.086 6 N -0.162 5.162 7 C -0.007 4.007 8 N -0.206 5.206 9 N -0.171 5.171 10 C -0.072 4.072 11 C -0.053 4.053 12 C 0.005 3.995 13 C -0.577 4.577 14 H 0.091 0.909 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.184 1.184 19 H -0.214 1.214 20 H -0.193 1.193 21 N -0.173 5.173 22 C -0.077 4.077 23 C -0.039 4.039 24 C -0.088 4.088 25 H 0.152 0.848 26 C 0.335 3.665 27 O -0.421 6.421 28 O -0.328 6.328 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.014 0.986 39 H -0.001 1.001 40 H 0.072 0.928 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -21.678 12.864 3.318 25.425 hybrid contribution 0.598 -0.244 0.217 0.682 sum -21.080 12.620 3.535 24.822 Atomic orbital electron populations 1.21937 0.93097 1.02661 1.03092 1.21121 0.97468 0.98965 0.92002 0.91258 1.21690 0.90973 1.02956 0.97980 1.22689 0.98576 0.96957 0.90401 1.58704 1.01456 1.49809 1.06218 1.22719 0.91078 0.98227 0.88627 1.74396 0.96061 1.24732 1.25436 1.73874 1.14226 1.16950 1.12041 1.25319 0.86711 1.00943 0.94209 1.20132 0.89735 0.96779 0.98664 1.18833 0.95833 0.90058 0.94808 1.21576 1.12905 0.98078 1.25181 0.90858 1.25996 1.00183 0.97589 0.95957 1.70117 1.42042 1.08898 1.36438 0.85465 0.79120 0.76947 0.79296 1.18402 1.21411 1.19350 1.46188 1.06352 1.44781 1.19967 1.22519 1.02677 1.00211 0.82260 1.21770 0.93269 0.97475 0.91379 1.21193 0.94819 1.02488 0.90347 0.84826 1.23283 0.75649 0.82317 0.85219 1.90678 1.37874 1.25944 1.87559 1.84557 1.73049 1.57898 1.17249 0.91029 0.92528 0.91605 0.88996 0.87354 0.88032 0.93811 0.89483 0.88224 0.98568 1.00149 0.92812 0.87160 0.86947 0.89062 0.93537 0.89725 0.70971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.91 71.98 0.64 -1.15 16 2 C -0.08 -1.02 1.92 -10.71 -0.02 -1.04 16 3 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16 4 C -0.10 -0.97 5.38 30.65 0.16 -0.81 16 5 C 0.04 0.62 5.28 86.33 0.46 1.07 16 6 N -0.44 -10.12 4.70 -706.13 -3.32 -13.43 16 7 C 0.35 11.35 7.21 260.11 1.88 13.23 16 8 N -0.36 -14.65 11.25 -58.00 -0.65 -15.30 16 9 N -0.33 -14.90 12.18 -49.53 -0.60 -15.50 16 10 C 0.20 7.85 7.32 137.64 1.01 8.86 16 11 C -0.01 -0.54 5.36 29.85 0.16 -0.38 16 12 C 0.04 2.22 4.96 29.85 0.15 2.37 16 13 C -0.54 -29.26 9.11 25.60 0.23 -29.02 16 14 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.94 -56.49 13.29 21.45 0.28 -56.21 16 17 Si 0.97 42.83 29.54 68.60 2.03 44.86 16 18 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 N -0.48 -15.12 3.21 -538.16 -1.73 -16.84 16 22 C 0.06 1.33 9.16 127.77 1.17 2.50 16 23 C 0.09 1.99 4.09 86.33 0.35 2.35 16 24 C -0.07 -1.13 2.30 -11.49 -0.03 -1.15 16 25 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 26 C 0.49 8.94 7.34 71.23 0.52 9.46 16 27 O -0.53 -11.75 14.59 21.99 0.32 -11.43 16 28 O -0.51 -7.91 13.35 -51.44 -0.69 -8.60 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.92 5.75 -2.39 -0.01 0.91 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 1.29 5.23 -2.39 -0.01 1.28 16 35 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 37 H 0.10 3.35 7.93 -2.39 -0.02 3.33 16 38 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 40 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 41 H 0.11 1.52 7.76 -2.39 -0.02 1.50 16 42 H 0.11 1.81 7.64 -2.38 -0.02 1.80 16 43 H 0.09 2.14 7.88 -2.39 -0.02 2.13 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 2.27 7.92 -2.39 -0.02 2.25 16 46 H 0.43 2.88 9.10 -74.06 -0.67 2.21 16 Total: -1.00 -78.88 371.95 3.11 -75.76 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.32 Total: 9.91 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 7.15 Total: 6.79 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -6.02 Total: -117.29 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.37 Total: -20.03 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -78.88 3.11 -75.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589362362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.125 kcal (2) G-P(sol) polarization free energy of solvation -78.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds