Wall clock time and date at job start Tue Mar 31 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.57624 * 2 1 4 4 C 1.53123 * 109.52104 * 120.15444 * 2 1 3 5 5 C 1.53036 * 109.27382 * 62.25424 * 4 2 1 6 6 N 1.46845 * 109.52778 * 59.17714 * 5 4 2 7 7 C 1.38585 * 110.99797 * 174.15943 * 6 5 4 8 8 N 1.31216 * 126.46862 * 124.23811 * 7 6 5 9 9 N 1.28529 * 109.85761 * 179.97438 * 8 7 6 10 10 C 1.30298 * 110.05375 * 0.02562 * 9 8 7 11 11 C 1.50696 * 126.34505 * 180.02562 * 10 9 8 12 12 C 1.52990 * 109.47538 * 89.97126 * 11 10 9 13 13 C 1.50704 * 109.47554 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99505 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99947 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46856 * 90.00148 * 17 15 13 19 19 H 1.48494 * 109.47349 * 210.00383 * 17 15 13 20 20 H 1.48499 * 109.47161 * 330.00503 * 17 15 13 21 21 N 1.36453 * 126.47366 * 303.91732 * 7 6 5 22 22 C 1.46494 * 127.13500 * 0.04195 * 21 7 6 23 23 C 1.46842 * 111.19553 * 298.25487 * 6 5 4 24 24 C 1.53042 * 109.52218 * 61.74464 * 23 6 5 25 25 H 1.09003 * 109.50514 * 60.79804 * 24 23 6 26 26 C 1.50706 * 109.50315 * 180.87464 * 24 23 6 27 27 O 1.20825 * 119.99859 * 119.99385 * 26 24 23 28 28 O 1.34224 * 120.00295 * 300.00344 * 26 24 23 29 29 H 1.08997 * 109.47458 * 180.16164 * 1 2 3 30 30 H 1.09002 * 109.47339 * 300.16272 * 1 2 3 31 31 H 1.09005 * 109.46891 * 60.15990 * 1 2 3 32 32 H 1.08997 * 109.50615 * 302.30924 * 4 2 1 33 33 H 1.08998 * 109.53271 * 182.20674 * 4 2 1 34 34 H 1.09003 * 109.46635 * 299.15605 * 5 4 2 35 35 H 1.09000 * 109.45336 * 179.18949 * 5 4 2 36 36 H 1.09005 * 109.46940 * 209.97211 * 11 10 9 37 37 H 1.09003 * 109.47595 * 329.96738 * 11 10 9 38 38 H 1.08997 * 109.47382 * 299.99792 * 12 11 10 39 39 H 1.09003 * 109.47636 * 59.99640 * 12 11 10 40 40 H 0.97003 * 119.99384 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47034 * 89.99843 * 22 21 7 42 42 H 1.09001 * 109.46880 * 209.99632 * 22 21 7 43 43 H 1.08998 * 109.47775 * 329.99697 * 22 21 7 44 44 H 1.08995 * 109.46920 * 301.72273 * 23 6 5 45 45 H 1.08999 * 109.46000 * 181.75684 * 23 6 5 46 46 H 0.96700 * 117.00196 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7250 1.2479 5 6 1.5766 -2.1825 1.2117 6 7 2.0924 -2.8324 0.0001 7 6 1.7998 -4.1870 0.0002 8 7 1.1530 -4.8452 -0.9326 9 7 1.0613 -6.0855 -0.6080 10 6 1.6389 -6.2902 0.5419 11 6 1.7466 -7.6078 1.2652 12 6 3.0295 -8.3221 0.8356 13 6 3.1375 -9.6396 1.5594 14 1 2.3682 -9.9373 2.2565 15 6 4.2184 -10.4647 1.3316 16 7 5.1554 -10.1018 0.4831 17 14 4.3526 -12.0973 2.2294 18 1 3.6899 -13.1582 1.4290 19 1 5.7846 -12.4419 2.4188 20 1 3.6900 -11.9898 3.5540 21 7 2.1352 -5.0892 0.9674 22 6 2.8706 -4.8250 2.2065 23 6 1.5766 -2.1826 -1.2115 24 6 2.0417 -0.7250 -1.2477 25 1 3.1310 -0.6910 -1.2681 26 6 1.4943 -0.0527 -2.4804 27 8 0.7720 0.9100 -2.3731 28 8 1.8089 -0.5233 -3.6974 29 1 -0.3634 -1.0276 0.0029 30 1 -0.3634 0.5164 0.8885 31 1 -0.3633 0.5114 -0.8915 32 1 1.6457 -0.2386 2.1394 33 1 3.1309 -0.6910 1.2682 34 1 0.4871 -2.2161 1.2060 35 1 1.9514 -2.7051 2.0917 36 1 1.7719 -7.4310 2.3405 37 1 0.8852 -8.2289 1.0194 38 1 3.0042 -8.4990 -0.2397 39 1 3.8910 -7.7012 1.0815 40 1 5.9160 -10.6822 0.3232 41 1 2.1673 -4.5687 2.9988 42 1 3.4318 -5.7146 2.4926 43 1 3.5599 -3.9953 2.0502 44 1 0.4872 -2.2162 -1.2059 45 1 1.9513 -2.7054 -2.0915 46 1 1.4335 -0.0592 -4.4582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589362363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:10 Heat of formation + Delta-G solvation = -11.926164 kcal Electronic energy + Delta-G solvation = -27914.904582 eV Core-core repulsion = 24033.878493 eV Total energy + Delta-G solvation = -3881.026089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.68754 -41.15876 -39.18575 -36.57350 -35.02453 -34.86532 -33.65143 -31.82888 -31.62012 -29.04376 -27.85222 -27.24203 -25.35111 -24.93640 -24.20708 -22.25423 -21.73607 -20.86542 -19.93600 -18.98757 -18.37664 -17.55175 -16.66639 -16.52561 -16.18331 -15.97858 -15.88210 -15.49201 -14.94126 -14.53199 -14.41321 -14.19194 -13.74495 -13.53510 -13.26112 -13.09658 -12.92158 -12.68456 -12.34187 -12.27212 -12.13089 -11.93944 -11.61481 -11.37728 -11.28842 -11.19283 -11.10554 -10.99772 -10.88770 -10.69725 -10.41418 -10.32133 -10.03848 -9.90638 -9.74879 -9.39390 -9.23280 -8.42250 -7.95296 -6.06453 -4.10898 1.80411 2.08703 2.40681 2.73758 3.23437 3.29061 3.35669 3.37696 3.61659 4.10667 4.27955 4.39987 4.45169 4.55409 4.76680 4.83549 4.93082 4.96598 5.03629 5.09619 5.13514 5.14916 5.21208 5.29502 5.35776 5.43612 5.46891 5.52949 5.57679 5.67001 5.72605 5.75495 5.87184 6.00000 6.15634 6.30679 6.33884 6.43923 6.57543 6.65645 6.88591 7.36270 7.54278 7.58142 7.68093 7.90941 8.28111 8.95344 9.17776 9.53855 11.04551 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.002572 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.191992 B =10882.006098 C =11301.925728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.077 4.077 3 H 0.085 0.915 4 C -0.109 4.109 5 C 0.042 3.958 6 N -0.444 5.444 7 C 0.334 3.666 8 N -0.322 5.322 9 N -0.294 5.294 10 C 0.214 3.786 11 C -0.031 4.031 12 C 0.032 3.968 13 C -0.525 4.525 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.273 1.273 21 N -0.482 5.482 22 C 0.074 3.926 23 C 0.083 3.917 24 C -0.076 4.076 25 H 0.121 0.879 26 C 0.490 3.510 27 O -0.509 6.509 28 O -0.510 6.510 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.026 0.974 39 H 0.014 0.986 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.105 0.895 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 23.342 1.556 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.096 4.096 3 H 0.103 0.897 4 C -0.147 4.147 5 C -0.085 4.085 6 N -0.167 5.167 7 C -0.023 4.023 8 N -0.167 5.167 9 N -0.132 5.132 10 C -0.054 4.054 11 C -0.071 4.071 12 C -0.007 4.007 13 C -0.563 4.563 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.177 5.177 22 C -0.069 4.069 23 C -0.044 4.044 24 C -0.096 4.096 25 H 0.139 0.861 26 C 0.332 3.668 27 O -0.397 6.397 28 O -0.321 6.321 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.033 0.967 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.123 0.877 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -5.615 23.148 0.579 23.826 hybrid contribution 0.110 -0.369 1.110 1.175 sum -5.505 22.780 1.689 23.496 Atomic orbital electron populations 1.22269 0.94375 1.02135 1.03905 1.21064 0.97014 0.99425 0.92098 0.89670 1.21647 1.02095 0.93216 0.97728 1.22488 0.98895 0.95499 0.91570 1.58480 1.57245 0.96387 1.04610 1.22309 1.00410 0.89673 0.89864 1.74502 1.18562 1.00251 1.23376 1.73999 1.20692 1.07850 1.10632 1.25578 0.96720 0.88815 0.94283 1.20438 1.03718 0.85903 0.96992 1.19074 0.89320 0.94485 0.97791 1.21138 1.07004 1.03063 1.25116 0.92302 1.25015 0.95718 0.98294 0.95228 1.69977 1.10796 1.37431 1.34799 0.86558 0.77193 0.83972 0.80067 1.20516 1.21238 1.19823 1.46029 1.44701 1.07927 1.19021 1.22125 0.96626 1.04886 0.83288 1.21881 0.99232 0.91025 0.92294 1.21156 1.03410 0.95262 0.89768 0.86111 1.23223 0.77256 0.81625 0.84730 1.90648 1.34826 1.27208 1.87035 1.84583 1.70765 1.59963 1.16824 0.92888 0.92382 0.89719 0.89934 0.90247 0.92930 0.89703 0.91235 0.89274 0.95589 0.96747 0.92843 0.90767 0.87992 0.89206 0.92097 0.87714 0.73010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 8.26 37.16 0.31 -1.16 16 2 C -0.08 -0.59 2.42 -90.50 -0.22 -0.81 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -0.74 5.60 -26.65 -0.15 -0.88 16 5 C 0.04 0.39 5.03 -3.84 -0.02 0.37 16 6 N -0.44 -5.41 4.70 -174.55 -0.82 -6.24 16 7 C 0.33 5.45 7.21 -318.87 -2.30 3.15 16 8 N -0.32 -6.33 11.24 30.32 0.34 -5.99 16 9 N -0.29 -6.34 12.18 32.99 0.40 -5.94 16 10 C 0.21 4.19 7.32 -154.02 -1.13 3.06 16 11 C -0.03 -0.61 5.36 -27.89 -0.15 -0.76 16 12 C 0.03 0.79 4.95 -27.89 -0.14 0.65 16 13 C -0.52 -14.19 9.11 -34.44 -0.31 -14.51 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 17 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 N -0.48 -7.83 3.21 -121.46 -0.39 -8.21 16 22 C 0.07 0.86 9.16 59.84 0.55 1.41 16 23 C 0.08 0.94 3.85 -3.83 -0.01 0.93 16 24 C -0.08 -0.66 2.58 -91.69 -0.24 -0.90 16 25 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 26 C 0.49 4.53 7.33 36.01 0.26 4.80 16 27 O -0.51 -5.66 14.29 -18.75 -0.27 -5.93 16 28 O -0.51 -4.00 13.34 -39.24 -0.52 -4.53 16 29 H 0.05 0.50 4.92 -51.93 -0.26 0.25 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.86 5.34 -51.93 -0.28 0.59 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.52 6.51 -51.93 -0.34 0.19 16 35 H 0.08 0.72 5.23 -51.93 -0.27 0.44 16 36 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 37 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 42 H 0.10 1.29 7.91 -51.93 -0.41 0.88 16 43 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 44 H 0.06 0.74 6.51 -51.93 -0.34 0.40 16 45 H 0.10 1.37 7.91 -51.93 -0.41 0.96 16 46 H 0.41 1.47 9.10 45.56 0.41 1.88 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -34.93 364.73 -9.72 -44.65 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.02 Total: -0.62 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.65 Total: -3.09 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.27 Total: -51.98 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.79 Total: -10.45 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.93 -9.72 -44.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589362363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.724 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds