Wall clock time and date at job start Tue Mar 31 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.57624 * 2 1 4 4 C 1.53123 * 109.52104 * 120.15444 * 2 1 3 5 5 C 1.53036 * 109.27382 * 62.25424 * 4 2 1 6 6 N 1.46845 * 109.52778 * 59.17714 * 5 4 2 7 7 C 1.38585 * 110.99797 * 174.15943 * 6 5 4 8 8 N 1.31216 * 126.46862 * 124.23811 * 7 6 5 9 9 N 1.28529 * 109.85761 * 179.97438 * 8 7 6 10 10 C 1.30298 * 110.05375 * 0.02562 * 9 8 7 11 11 C 1.50696 * 126.34505 * 180.02562 * 10 9 8 12 12 C 1.52990 * 109.47538 * 89.97126 * 11 10 9 13 13 C 1.50704 * 109.47554 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99505 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99947 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46856 * 90.00148 * 17 15 13 19 19 H 1.48494 * 109.47349 * 210.00383 * 17 15 13 20 20 H 1.48499 * 109.47161 * 330.00503 * 17 15 13 21 21 N 1.36453 * 126.47366 * 303.91732 * 7 6 5 22 22 C 1.46494 * 127.13500 * 0.04195 * 21 7 6 23 23 C 1.46842 * 111.19553 * 298.25487 * 6 5 4 24 24 C 1.53042 * 109.52218 * 61.74464 * 23 6 5 25 25 H 1.09003 * 109.50514 * 60.79804 * 24 23 6 26 26 C 1.50706 * 109.50315 * 180.87464 * 24 23 6 27 27 O 1.20825 * 119.99859 * 119.99385 * 26 24 23 28 28 O 1.34224 * 120.00295 * 300.00344 * 26 24 23 29 29 H 1.08997 * 109.47458 * 180.16164 * 1 2 3 30 30 H 1.09002 * 109.47339 * 300.16272 * 1 2 3 31 31 H 1.09005 * 109.46891 * 60.15990 * 1 2 3 32 32 H 1.08997 * 109.50615 * 302.30924 * 4 2 1 33 33 H 1.08998 * 109.53271 * 182.20674 * 4 2 1 34 34 H 1.09003 * 109.46635 * 299.15605 * 5 4 2 35 35 H 1.09000 * 109.45336 * 179.18949 * 5 4 2 36 36 H 1.09005 * 109.46940 * 209.97211 * 11 10 9 37 37 H 1.09003 * 109.47595 * 329.96738 * 11 10 9 38 38 H 1.08997 * 109.47382 * 299.99792 * 12 11 10 39 39 H 1.09003 * 109.47636 * 59.99640 * 12 11 10 40 40 H 0.97003 * 119.99384 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47034 * 89.99843 * 22 21 7 42 42 H 1.09001 * 109.46880 * 209.99632 * 22 21 7 43 43 H 1.08998 * 109.47775 * 329.99697 * 22 21 7 44 44 H 1.08995 * 109.46920 * 301.72273 * 23 6 5 45 45 H 1.08999 * 109.46000 * 181.75684 * 23 6 5 46 46 H 0.96700 * 117.00196 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7250 1.2479 5 6 1.5766 -2.1825 1.2117 6 7 2.0924 -2.8324 0.0001 7 6 1.7998 -4.1870 0.0002 8 7 1.1530 -4.8452 -0.9326 9 7 1.0613 -6.0855 -0.6080 10 6 1.6389 -6.2902 0.5419 11 6 1.7466 -7.6078 1.2652 12 6 3.0295 -8.3221 0.8356 13 6 3.1375 -9.6396 1.5594 14 1 2.3682 -9.9373 2.2565 15 6 4.2184 -10.4647 1.3316 16 7 5.1554 -10.1018 0.4831 17 14 4.3526 -12.0973 2.2294 18 1 3.6899 -13.1582 1.4290 19 1 5.7846 -12.4419 2.4188 20 1 3.6900 -11.9898 3.5540 21 7 2.1352 -5.0892 0.9674 22 6 2.8706 -4.8250 2.2065 23 6 1.5766 -2.1826 -1.2115 24 6 2.0417 -0.7250 -1.2477 25 1 3.1310 -0.6910 -1.2681 26 6 1.4943 -0.0527 -2.4804 27 8 0.7720 0.9100 -2.3731 28 8 1.8089 -0.5233 -3.6974 29 1 -0.3634 -1.0276 0.0029 30 1 -0.3634 0.5164 0.8885 31 1 -0.3633 0.5114 -0.8915 32 1 1.6457 -0.2386 2.1394 33 1 3.1309 -0.6910 1.2682 34 1 0.4871 -2.2161 1.2060 35 1 1.9514 -2.7051 2.0917 36 1 1.7719 -7.4310 2.3405 37 1 0.8852 -8.2289 1.0194 38 1 3.0042 -8.4990 -0.2397 39 1 3.8910 -7.7012 1.0815 40 1 5.9160 -10.6822 0.3232 41 1 2.1673 -4.5687 2.9988 42 1 3.4318 -5.7146 2.4926 43 1 3.5599 -3.9953 2.0502 44 1 0.4872 -2.2162 -1.2059 45 1 1.9513 -2.7054 -2.0915 46 1 1.4335 -0.0592 -4.4582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589362363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:10 Heat of formation + Delta-G solvation = -33.740610 kcal Electronic energy + Delta-G solvation = -27915.850527 eV Core-core repulsion = 24033.878493 eV Total energy + Delta-G solvation = -3881.972034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.03732 -41.92520 -40.01120 -37.30694 -36.40927 -36.05823 -35.20602 -33.43927 -32.55809 -30.38121 -28.98445 -28.21542 -27.10443 -25.85401 -25.05340 -23.73129 -22.87188 -22.01300 -21.41597 -19.72232 -19.10972 -18.64969 -18.41896 -17.49676 -17.37792 -17.10135 -16.79338 -16.48790 -16.38752 -15.86037 -15.22962 -15.09872 -14.89411 -14.82916 -14.39872 -14.35753 -14.13471 -13.84981 -13.53984 -13.28409 -13.04967 -12.87250 -12.83675 -12.65666 -12.60585 -12.45301 -12.34753 -12.12187 -11.99589 -11.92302 -11.73222 -11.59474 -11.36344 -11.26487 -11.14514 -11.06587 -10.67380 -10.56017 -9.27475 -8.18940 -6.31349 0.77307 1.00553 1.29538 1.44488 1.46158 1.56621 1.79869 2.06124 2.43151 2.58678 3.15446 3.38648 3.49540 3.54910 3.75317 3.80354 3.86060 4.00080 4.07824 4.19553 4.29627 4.31698 4.34730 4.42794 4.49954 4.56204 4.66344 4.67986 4.70205 4.74038 4.81494 4.89245 4.92809 5.03452 5.09431 5.16512 5.23791 5.36215 5.45859 5.50023 5.58874 5.63579 5.70461 5.80264 6.13087 6.18916 6.85036 6.96851 7.38835 7.75266 8.93094 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.002572 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.191992 B =10882.006098 C =11301.925728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 H 0.098 0.902 4 C -0.099 4.099 5 C 0.038 3.962 6 N -0.437 5.437 7 C 0.351 3.649 8 N -0.362 5.362 9 N -0.332 5.332 10 C 0.197 3.803 11 C -0.013 4.013 12 C 0.043 3.957 13 C -0.538 4.538 14 H 0.073 0.927 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.255 1.255 21 N -0.478 5.478 22 C 0.065 3.935 23 C 0.087 3.913 24 C -0.071 4.071 25 H 0.136 0.864 26 C 0.492 3.508 27 O -0.528 6.528 28 O -0.514 6.514 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.087 0.913 38 H -0.020 1.020 39 H -0.004 1.004 40 H 0.263 0.737 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.282 24.734 4.142 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.093 4.093 3 H 0.116 0.884 4 C -0.137 4.137 5 C -0.088 4.088 6 N -0.161 5.161 7 C -0.006 4.006 8 N -0.207 5.207 9 N -0.171 5.171 10 C -0.073 4.073 11 C -0.053 4.053 12 C 0.004 3.996 13 C -0.576 4.576 14 H 0.091 0.909 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.179 1.179 21 N -0.173 5.173 22 C -0.076 4.076 23 C -0.040 4.040 24 C -0.090 4.090 25 H 0.153 0.847 26 C 0.335 3.665 27 O -0.418 6.418 28 O -0.328 6.328 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.105 0.895 38 H -0.002 1.002 39 H 0.014 0.986 40 H 0.072 0.928 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.131 0.869 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -5.397 24.566 3.177 25.352 hybrid contribution 0.051 -0.681 0.229 0.720 sum -5.346 23.885 3.406 24.712 Atomic orbital electron populations 1.22210 0.95221 1.01155 1.03732 1.21101 0.96220 1.00097 0.91892 0.88364 1.21670 1.02947 0.90999 0.98073 1.22709 0.98679 0.97115 0.90289 1.58690 1.56806 0.94361 1.06223 1.22734 0.98111 0.91185 0.88585 1.74396 1.21030 0.99940 1.25288 1.73878 1.22122 1.09228 1.11848 1.25316 0.97887 0.89755 0.94295 1.20125 1.00692 0.85883 0.98600 1.18837 0.91348 0.94558 0.94819 1.21605 1.07191 1.03712 1.25113 0.90862 1.25997 0.95358 1.02382 0.96014 1.70129 1.11611 1.39109 1.36637 0.85408 0.77235 0.78808 0.79358 1.20296 1.21055 1.17895 1.46177 1.44318 1.06689 1.20118 1.22508 0.97563 1.05279 0.82283 1.21784 0.98458 0.92498 0.91254 1.21173 1.04236 0.93192 0.90388 0.84654 1.23293 0.76759 0.81253 0.85192 1.90649 1.35624 1.28171 1.87378 1.84555 1.70752 1.60216 1.17284 0.94218 0.90943 0.91488 0.87374 0.88903 0.93564 0.88263 0.88261 0.89484 1.00150 0.98563 0.92825 0.87223 0.89076 0.86948 0.93266 0.89979 0.70985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 8.26 71.98 0.59 -2.01 16 2 C -0.07 -0.95 2.42 -10.71 -0.03 -0.98 16 3 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.10 -0.96 5.60 30.65 0.17 -0.78 16 5 C 0.04 0.59 5.03 86.33 0.43 1.03 16 6 N -0.44 -10.08 4.70 -706.16 -3.32 -13.40 16 7 C 0.35 11.38 7.21 260.11 1.88 13.26 16 8 N -0.36 -14.69 11.24 -58.00 -0.65 -15.34 16 9 N -0.33 -14.92 12.18 -49.54 -0.60 -15.52 16 10 C 0.20 7.84 7.32 137.64 1.01 8.85 16 11 C -0.01 -0.54 5.36 29.84 0.16 -0.38 16 12 C 0.04 2.21 4.95 29.85 0.15 2.36 16 13 C -0.54 -29.21 9.11 25.60 0.23 -28.98 16 14 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 15 C 0.00 0.02 5.46 84.65 0.46 0.49 16 16 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 17 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 N -0.48 -15.18 3.21 -538.20 -1.73 -16.90 16 22 C 0.06 1.35 9.16 127.77 1.17 2.52 16 23 C 0.09 1.97 3.85 86.33 0.33 2.30 16 24 C -0.07 -1.12 2.58 -11.49 -0.03 -1.15 16 25 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 26 C 0.49 8.72 7.33 71.24 0.52 9.25 16 27 O -0.53 -11.34 14.29 21.97 0.31 -11.03 16 28 O -0.51 -7.82 13.34 -51.35 -0.69 -8.50 16 29 H 0.04 0.72 4.92 -2.39 -0.01 0.71 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.32 5.34 -2.38 -0.01 1.31 16 32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.82 6.51 -2.39 -0.02 0.81 16 35 H 0.10 1.29 5.23 -2.39 -0.01 1.27 16 36 H 0.10 3.35 7.95 -2.38 -0.02 3.33 16 37 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 38 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 39 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.11 1.53 7.75 -2.39 -0.02 1.52 16 42 H 0.09 2.16 7.91 -2.39 -0.02 2.14 16 43 H 0.11 1.83 7.66 -2.39 -0.02 1.81 16 44 H 0.05 1.22 6.51 -2.39 -0.02 1.21 16 45 H 0.08 2.22 7.91 -2.39 -0.02 2.20 16 46 H 0.43 2.80 9.10 -74.06 -0.67 2.13 16 Total: -1.00 -78.88 364.73 3.03 -75.85 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.34 Total: 10.37 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 7.06 Total: 5.77 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -6.01 Total: -117.37 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.37 Total: -19.53 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -78.88 3.03 -75.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589362363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.109 kcal (2) G-P(sol) polarization free energy of solvation -78.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds