Wall clock time and date at job start Tue Mar 31 2020 14:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.62444 * 2 1 4 4 C 1.53241 * 109.63016 * 239.61634 * 2 1 3 5 5 N 1.46900 * 109.34038 * 186.26465 * 4 2 1 6 6 C 1.46896 * 111.00087 * 187.25510 * 5 4 2 7 7 C 1.50693 * 109.47224 * 169.99901 * 6 5 4 8 8 C 1.35351 * 126.37983 * 94.97423 * 7 6 5 9 9 C 1.41543 * 105.50473 * 180.02562 * 8 7 6 10 10 C 1.47585 * 126.52804 * 180.02562 * 9 8 7 11 11 O 1.21497 * 119.99660 * 359.97251 * 10 9 8 12 12 O 1.34722 * 120.00188 * 179.97438 * 10 9 8 13 13 N 1.31860 * 106.95276 * 359.97438 * 9 8 7 14 14 N 1.28471 * 110.06255 * 0.02562 * 13 9 8 15 15 C 1.46491 * 124.88241 * 179.97438 * 14 13 9 16 16 C 1.46897 * 111.26770 * 63.10084 * 5 4 2 17 17 C 1.53239 * 109.34320 * 296.89677 * 16 5 4 18 18 H 1.08994 * 109.62780 * 173.53713 * 17 16 5 19 19 C 1.53002 * 109.78919 * 294.02448 * 17 16 5 20 20 N 1.47078 * 108.52096 * 53.83042 * 17 16 5 21 21 C 1.36941 * 120.88162 * 128.79269 * 20 17 16 22 22 H 1.08005 * 119.99732 * 206.54544 * 21 20 17 23 23 C 1.38805 * 119.99834 * 26.54321 * 21 20 17 24 24 N 1.31619 * 120.00281 * 17.65704 * 23 21 20 25 25 Si 1.86803 * 119.99812 * 197.65798 * 23 21 20 26 26 H 1.48497 * 109.47133 * 94.11517 * 25 23 21 27 27 H 1.48499 * 109.47024 * 214.11201 * 25 23 21 28 28 H 1.48497 * 109.47089 * 334.11458 * 25 23 21 29 29 H 1.09000 * 109.46988 * 180.38484 * 1 2 3 30 30 H 1.08997 * 109.47421 * 300.38551 * 1 2 3 31 31 H 1.09000 * 109.46989 * 60.38579 * 1 2 3 32 32 H 1.09000 * 109.49251 * 66.30626 * 4 2 1 33 33 H 1.08996 * 109.51168 * 306.23845 * 4 2 1 34 34 H 1.09007 * 109.46967 * 49.99720 * 6 5 4 35 35 H 1.09007 * 109.47044 * 290.00038 * 6 5 4 36 36 H 1.07997 * 127.24753 * 359.97438 * 8 7 6 37 37 H 0.96705 * 116.99695 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47781 * 90.02052 * 15 14 13 39 39 H 1.08999 * 109.47067 * 210.02253 * 15 14 13 40 40 H 1.08999 * 109.46881 * 330.02026 * 15 14 13 41 41 H 1.09002 * 109.49016 * 56.86157 * 16 5 4 42 42 H 1.09004 * 109.49169 * 176.93703 * 16 5 4 43 43 H 1.08995 * 109.46854 * 179.12417 * 19 17 16 44 44 H 1.08996 * 109.46836 * 299.12562 * 19 17 16 45 45 H 1.08998 * 109.46591 * 59.12820 * 19 17 16 46 46 H 0.97006 * 120.00073 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7300 -1.2451 5 7 3.5060 -0.8582 -1.1646 6 6 4.0568 -1.3975 -2.4150 7 6 5.5595 -1.2863 -2.3911 8 6 6.4299 -2.2505 -2.0108 9 6 7.7163 -1.6789 -2.1594 10 6 9.0071 -2.3340 -1.8718 11 8 9.0301 -3.4781 -1.4635 12 8 10.1600 -1.6633 -2.0619 13 7 7.5419 -0.4502 -2.6049 14 7 6.2885 -0.2059 -2.7451 15 6 5.7301 1.0623 -3.2203 16 6 3.9062 -1.6804 -0.0150 17 6 3.4677 -0.9893 1.2805 18 1 3.6588 -1.6465 2.1288 19 6 4.2427 0.3179 1.4582 20 7 2.0279 -0.7021 1.1926 21 6 1.1736 -1.0789 2.1943 22 1 0.1329 -1.2663 1.9745 23 6 1.6452 -1.2199 3.4922 24 7 2.7912 -0.6733 3.8391 25 14 0.6533 -2.1854 4.7465 26 1 1.1299 -3.5914 4.7783 27 1 0.8242 -1.5744 6.0892 28 1 -0.7827 -2.1580 4.3693 29 1 -0.3633 -1.0277 0.0069 30 1 -0.3634 0.5198 0.8865 31 1 -0.3633 0.5078 -0.8934 32 1 1.7781 -0.1618 -2.1362 33 1 1.5951 -1.7215 -1.2978 34 1 3.6639 -0.8311 -3.2593 35 1 3.7716 -2.4448 -2.5158 36 1 6.1929 -3.2460 -1.6656 37 1 10.9802 -2.1339 -1.8593 38 1 5.6323 1.0324 -4.3055 39 1 4.7492 1.2183 -2.7713 40 1 6.3933 1.8798 -2.9377 41 1 3.4306 -2.6587 -0.0844 42 1 4.9895 -1.8014 -0.0140 43 1 3.9158 0.8126 2.3728 44 1 5.3091 0.1021 1.5231 45 1 4.0551 0.9702 0.6054 46 1 3.1205 -0.7715 4.7462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589399046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:16 Heat of formation + Delta-G solvation = 29.086133 kcal Electronic energy + Delta-G solvation = -28691.070417 eV Core-core repulsion = 24811.822754 eV Total energy + Delta-G solvation = -3879.247662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.77111 -39.87311 -38.58534 -36.11446 -35.13851 -33.55459 -32.66584 -31.76804 -30.68666 -27.94930 -27.83976 -26.35510 -26.02055 -24.11903 -23.91872 -22.17224 -21.14190 -20.88672 -19.94585 -18.58584 -17.80446 -16.97745 -16.63284 -16.20952 -16.16677 -15.49448 -15.25044 -14.64130 -14.54319 -14.29072 -13.93400 -13.75158 -13.43375 -13.26435 -13.02118 -12.87292 -12.62457 -12.57960 -11.96234 -11.85234 -11.62269 -11.56671 -11.26729 -11.01415 -10.92772 -10.89526 -10.86187 -10.64421 -10.51986 -10.47247 -10.02751 -9.93150 -9.48293 -9.32810 -9.15921 -8.97886 -8.46655 -7.92057 -6.63975 -5.75419 -3.16657 1.31110 1.99378 2.33855 3.04409 3.16832 3.38402 3.45891 3.46944 4.28037 4.37424 4.50332 4.60242 4.97030 5.04383 5.07172 5.26997 5.32615 5.39332 5.44108 5.52639 5.60010 5.72554 5.80000 5.90635 6.03916 6.07819 6.21086 6.26796 6.31383 6.32482 6.35027 6.39374 6.60956 6.68079 6.82324 6.92323 6.99667 7.09322 7.21206 7.41882 7.46010 7.70876 7.73039 7.82629 7.95787 7.99240 8.46427 9.24972 9.87510 10.44869 11.31957 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.003803 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.443180 B = 7360.292302 C = 8437.424746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.173 3.827 3 H 0.032 0.968 4 C 0.049 3.951 5 N -0.527 5.527 6 C 0.116 3.884 7 C 0.040 3.960 8 C -0.169 4.169 9 C -0.015 4.015 10 C 0.577 3.423 11 O -0.509 6.509 12 O -0.504 6.504 13 N -0.236 5.236 14 N -0.261 5.261 15 C 0.084 3.916 16 C 0.039 3.961 17 C 0.200 3.800 18 H 0.094 0.906 19 C -0.132 4.132 20 N -0.585 5.585 21 C -0.251 4.251 22 H 0.071 0.929 23 C 0.003 3.997 24 N -0.897 5.897 25 Si 0.897 3.103 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.280 1.280 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.162 0.838 37 H 0.412 0.588 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.027 0.973 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.018 0.982 45 H 0.030 0.970 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 1.569 -15.781 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.066 3.934 3 H 0.049 0.951 4 C -0.080 4.080 5 N -0.252 5.252 6 C -0.013 4.013 7 C -0.085 4.085 8 C -0.198 4.198 9 C -0.171 4.171 10 C 0.419 3.581 11 O -0.395 6.395 12 O -0.314 6.314 13 N -0.074 5.074 14 N -0.050 5.050 15 C -0.056 4.056 16 C -0.090 4.090 17 C 0.093 3.907 18 H 0.112 0.888 19 C -0.191 4.191 20 N -0.308 5.308 21 C -0.380 4.380 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.541 5.541 25 Si 0.728 3.272 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.206 1.206 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.180 0.820 37 H 0.270 0.730 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.037 0.963 45 H 0.049 0.951 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.525 2.992 -15.865 17.414 hybrid contribution -0.541 -2.252 0.997 2.521 sum 5.984 0.741 -14.868 16.045 Atomic orbital electron populations 1.21798 0.96016 1.01376 1.00371 1.20427 0.92225 0.94156 0.86612 0.95052 1.22711 0.86127 0.99501 0.99690 1.61998 1.11128 1.50810 1.01261 1.20583 0.86067 0.99896 0.94783 1.21275 0.95638 0.87451 1.04098 1.21453 0.89411 1.01550 1.07338 1.20467 0.91953 0.92812 1.11846 1.19277 0.82718 0.82864 0.73213 1.90920 1.87605 1.18057 1.42942 1.84651 1.16806 1.49034 1.80928 1.73646 0.99730 1.16824 1.17184 1.45357 1.02664 1.12379 1.44630 1.22257 1.01200 0.81562 1.00563 1.22943 0.99318 0.94392 0.92365 1.20368 0.82756 0.95194 0.92385 0.88811 1.21923 0.96521 0.99372 1.01264 1.44292 1.03447 1.65053 1.17975 1.19194 0.93006 1.39293 0.86523 0.91154 1.24984 0.97674 1.00145 0.96714 1.70017 1.21422 1.44666 1.18044 0.86354 0.79645 0.80074 0.81150 1.21664 1.21917 1.20587 0.92904 0.91817 0.94255 0.92123 0.95025 0.89969 0.92363 0.82013 0.72957 0.89899 0.87415 0.88508 0.95512 0.91679 0.90821 0.96326 0.95132 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.94 37.16 0.30 -2.10 16 2 C 0.17 3.33 3.25 -67.49 -0.22 3.11 16 3 H 0.03 0.65 7.63 -51.93 -0.40 0.25 16 4 C 0.05 0.78 4.91 -3.70 -0.02 0.76 16 5 N -0.53 -8.28 4.12 -235.76 -0.97 -9.26 16 6 C 0.12 1.44 4.85 -4.98 -0.02 1.42 16 7 C 0.04 0.53 5.66 -82.21 -0.46 0.07 16 8 C -0.17 -2.47 9.52 -39.35 -0.37 -2.85 16 9 C -0.01 -0.22 7.17 -82.78 -0.59 -0.81 16 10 C 0.58 8.25 8.34 34.54 0.29 8.54 16 11 O -0.51 -8.28 17.71 -19.26 -0.34 -8.62 16 12 O -0.50 -5.60 13.44 -40.55 -0.54 -6.14 16 13 N -0.24 -3.47 11.99 33.41 0.40 -3.06 16 14 N -0.26 -3.36 3.70 -63.86 -0.24 -3.60 16 15 C 0.08 0.73 10.97 59.84 0.66 1.39 16 16 C 0.04 0.73 4.85 -3.70 -0.02 0.71 16 17 C 0.20 4.55 2.34 -67.49 -0.16 4.39 16 18 H 0.09 2.48 6.14 -51.93 -0.32 2.16 16 19 C -0.13 -2.97 8.97 37.16 0.33 -2.64 16 20 N -0.58 -13.65 2.73 -157.01 -0.43 -14.08 16 21 C -0.25 -6.47 8.73 -15.06 -0.13 -6.60 16 22 H 0.07 1.78 6.18 -52.48 -0.32 1.46 16 23 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 24 N -0.90 -24.93 9.80 55.49 0.54 -24.39 16 25 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.05 0.94 7.55 -51.93 -0.39 0.55 16 30 H 0.06 1.22 7.58 -51.93 -0.39 0.82 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.79 7.99 -51.93 -0.41 0.37 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 35 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 36 H 0.16 2.26 8.06 -52.49 -0.42 1.83 16 37 H 0.41 2.34 9.11 45.56 0.42 2.76 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.93 7.66 -51.93 -0.40 0.53 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.22 6.16 -51.93 -0.32 0.90 16 43 H 0.07 1.89 6.87 -51.93 -0.36 1.53 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.03 0.65 7.10 -51.93 -0.37 0.28 16 46 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -32.07 367.86 -7.77 -39.83 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.19 Total: 2.12 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.51 Total: 5.39 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.69 Total: -54.39 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.89 Total: -14.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.07 -7.77 -39.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589399046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.921 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds